Project measure / variable:   CSNA03   goodness_of_fit_in

ID, description, units MPD:112543   goodness_of_fit_in   percentage of observed rhythms that fit expected sine wave, indicating stability and robustness of circadian rhythm, in fibroblast cultures, founders   [%]  
Data set, strains CSNA03   inbred w/CC8   8 strains     sex: both     age: 8-12wks
Procedure in vitro assay
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  STRAIN COMPARISON PLOT
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CSNA03 - percentage of observed rhythms that fit expected sine wave, indicating stability and robustness of circadian rhythm, in fibroblast cultures, founders

CAST/EiJPWK/PhJNZO/HlLtJC57BL/6JA/JWSB/EiJ129S1/SvImJNOD/ShiLtJ % 65707580859095femalemale


  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested8 strains8 strains
Mean of the strain means83.27   % 82.62   %
Median of the strain means82.06   % 81.86   %
SD of the strain means± 5.8902 ± 5.4182
Coefficient of variation (CV)0.0707 0.0656
Min–max range of strain means75.44   –   93.5   % 75.79   –   93.09   %
Mean sample size per strain9.4   mice 9.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 14.3765 14.3765 0.3497 0.5553
strain 7 4006.4175 572.3454 13.9204 < 0.0001
sex:strain 7 300.5427 42.9347 1.0442 0.4036
Residuals 131 5386.1298 41.1155


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page: 1 - 10 / 16 (16)
Strain
Sex
Mean
SD
N mice
SEM
CV
Min, Max
Z score
129S1/SvImJ f 82.51 8.2546   10 2.6103 0.1 73.29, 91.96 -0.13
129S1/SvImJ m 77.4 8.7219   9 2.9073 0.1127 67.56, 90.79 -0.96
A/J f 81.6 3.9118   9 1.3039 0.0479 73.19, 87.17 -0.28
A/J m 80.76 2.5547   9 0.85156 0.0316 77.39, 85.1 -0.34
C57BL/6J f 81.08 9.3688   10 2.9627 0.1156 66.49, 91.91 -0.37
C57BL/6J m 81.86 7.6814   10 2.4291 0.0938 64.21, 92.55 -0.14
CAST/EiJ f 93.5 1.6915   10 0.53491 0.0181 90.47, 95.28 1.74
CAST/EiJ m 93.09 1.8919   10 0.59828 0.0203 89.29, 94.58 1.93
NOD/ShiLtJ f 75.44 6.8848   9 2.2949 0.0913 68.38, 86.62 -1.33
NOD/ShiLtJ m 75.79 6.7901   9 2.2634 0.0896 65.95, 85.99 -1.26
NZO/HlLtJ f 84.02 6.7595   8 2.3899 0.0805 73.3, 93.86 0.13
NZO/HlLtJ m 81.86 4.777   7 1.8055 0.0584 74.05, 89.8 -0.14
PWK/PhJ f 89.81 2.1808   10 0.68962 0.0243 86.83, 93.49 1.11
PWK/PhJ m 86.68 4.2131   10 1.3323 0.0486 77.13, 90.94 0.75
WSB/EiJ f 78.23 11.02   9 3.6734 0.1409 65.38, 92.02 -0.86
WSB/EiJ m 83.56 5.7541   8 2.0344 0.0689 73.11, 90.29 0.17


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 82.513 2.0276956011 86.5242655839 78.5017344161
129S1/SvImJ m 77.3955555556 2.1373788336 81.6238007372 73.1673103739
A/J f 81.5977777778 2.1373788336 85.8260229594 77.3695325961
A/J m 80.7588888889 2.1373788336 84.9871340705 76.5306437073
C57BL/6J f 81.078 2.0276956011 85.0892655839 77.0667344161
C57BL/6J m 81.861 2.0276956011 85.8722655839 77.8497344161
CAST/EiJ f 93.501 2.0276956011 97.5122655839 89.4897344161
CAST/EiJ m 93.09 2.0276956011 97.1012655839 89.0787344161
NOD/ShiLtJ f 75.4433333333 2.1373788336 79.671578515 71.2150881517
NOD/ShiLtJ m 75.79 2.1373788336 80.0182451816 71.5617548184
NZO/HlLtJ f 84.02 2.2670326008 88.5047312607 79.5352687393
NZO/HlLtJ m 81.8557142857 2.4235597934 86.6500936712 77.0613349002
PWK/PhJ f 89.813 2.0276956011 93.8242655839 85.8017344161
PWK/PhJ m 86.678 2.0276956011 90.6892655839 82.6667344161
WSB/EiJ f 78.2344444444 2.1373788336 82.4626896261 74.0061992628
WSB/EiJ m 83.565 2.2670326008 88.0497312607 79.0802687393


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 79.9542777778 1.4730867022 82.8683946637 77.0401608918
A/J both 81.1783333333 1.5113550672 84.1681541738 78.1885124929
C57BL/6J both 81.4695 1.4337973097 84.3058930955 78.6331069045
CAST/EiJ both 93.2955 1.4337973097 96.1318930955 90.4591069045
NOD/ShiLtJ both 75.6166666667 1.5113550672 78.6064875071 72.6268458262
NZO/HlLtJ both 82.9378571429 1.6592979604 86.2203443162 79.6553699695
PWK/PhJ both 88.2455 1.4337973097 91.0818930955 85.4091069045
WSB/EiJ both 80.8997222222 1.557869145 83.9815590039 77.8178854405




  GWAS USING LINEAR MIXED MODELS

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