Project measure / variable:   CSNA03   period_in

ID, description, units MPD:112539   period_in   peak-to-peak interval, indicating amount of time it takes for one cycle of bioluminescence circadian rhythm, in fibroblast cultures, founders   [h]  
Data set, strains CSNA03   inbred w/CC8   8 strains     sex: both     age: 8-12wks
Procedure in vitro assay
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  STRAIN COMPARISON PLOT
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CSNA03 - peak-to-peak interval, indicating amount of time it takes for one cycle of bioluminescence circadian rhythm, in fibroblast cultures, founders

A/JPWK/PhJNOD/ShiLtJC57BL/6JNZO/HlLtJ129S1/SvImJWSB/EiJCAST/EiJ h 22.523.023.524.024.525.025.5femalemale


  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested8 strains8 strains
Mean of the strain means23.713   h 23.845   h
Median of the strain means23.803   h 23.765   h
SD of the strain means± 0.40585 ± 0.46886
Coefficient of variation (CV)0.0171 0.0197
Min–max range of strain means23.051   –   24.32   h 23.117   –   24.616   h
Mean sample size per strain9.4   mice 9.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 0.7081 0.7081 5.9089 0.0164
strain 7 22.7796 3.2542 27.1571 < 0.0001
sex:strain 7 2.8071 0.401 3.3465 0.0026
Residuals 131 15.6977 0.1198


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page: 1 - 10 / 16 (16)
Strain
Sex
Mean
SD
N mice
SEM
CV
Min, Max
Z score
129S1/SvImJ f 23.43 0.33438   10 0.10574 0.0143 22.682, 23.909 -0.7
129S1/SvImJ m 23.754 0.27001   9 0.09 0.0114 23.291, 24.084 -0.19
A/J f 24.32 0.52835   9 0.17612 0.0217 23.803, 25.627 1.5
A/J m 24.616 0.50671   9 0.1689 0.0206 24.042, 25.494 1.64
C57BL/6J f 24.07 0.26043   10 0.08236 0.0108 23.677, 24.478 0.88
C57BL/6J m 23.608 0.35552   10 0.11243 0.0151 22.942, 24.003 -0.51
CAST/EiJ f 23.051 0.3744   10 0.11839 0.0162 22.263, 23.546 -1.63
CAST/EiJ m 23.117 0.2725   10 0.08617 0.0118 22.722, 23.695 -1.55
NOD/ShiLtJ f 23.804 0.30918   9 0.10306 0.013 23.422, 24.393 0.22
NOD/ShiLtJ m 24.036 0.33884   9 0.11295 0.0141 23.636, 24.729 0.41
NZO/HlLtJ f 23.803 0.14394   8 0.05089 0.006 23.593, 24.096 0.22
NZO/HlLtJ m 23.776 0.30258   7 0.11436 0.0127 23.377, 24.297 -0.15
PWK/PhJ f 23.84 0.20191   10 0.06385 0.0085 23.628, 24.284 0.31
PWK/PhJ m 24.312 0.40052   10 0.12665 0.0165 23.82, 25.044 1.0
WSB/EiJ f 23.387 0.41155   9 0.13718 0.0176 22.647, 23.863 -0.8
WSB/EiJ m 23.544 0.29271   8 0.10349 0.0124 22.967, 23.962 -0.64


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 23.43 0.1094666764 23.6465511981 23.2134488019
129S1/SvImJ m 23.7537777778 0.1153880085 23.9820427831 23.5255127725
A/J f 24.3196666667 0.1153880085 24.547931672 24.0914016614
A/J m 24.6158888889 0.1153880085 24.8441538942 24.3876238836
C57BL/6J f 24.0704 0.1094666764 24.2869511981 23.8538488019
C57BL/6J m 23.6076 0.1094666764 23.8241511981 23.3910488019
CAST/EiJ f 23.0508 0.1094666764 23.2673511981 22.8342488019
CAST/EiJ m 23.1167 0.1094666764 23.3332511981 22.9001488019
NOD/ShiLtJ f 23.8035555556 0.1153880085 24.0318205609 23.5752905502
NOD/ShiLtJ m 24.0357777778 0.1153880085 24.2640427831 23.8075127725
NZO/HlLtJ f 23.802625 0.1223874649 24.0447365997 23.5605134003
NZO/HlLtJ m 23.7761428571 0.1308377034 24.0349710445 23.5173146698
PWK/PhJ f 23.8401 0.1094666764 24.0566511981 23.6235488019
PWK/PhJ m 24.3124 0.1094666764 24.5289511981 24.0958488019
WSB/EiJ f 23.387 0.1153880085 23.6152650053 23.1587349947
WSB/EiJ m 23.5445 0.1223874649 23.7866115997 23.3023884003


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 23.5918888889 0.0795256967 23.749209687 23.4345680908
A/J both 24.4677777778 0.0815916433 24.6291855109 24.3063700446
C57BL/6J both 23.839 0.0774046292 23.9921248206 23.6858751794
CAST/EiJ both 23.08375 0.0774046292 23.2368748206 22.9306251794
NOD/ShiLtJ both 23.9196666667 0.0815916433 24.0810743998 23.7582589335
NZO/HlLtJ both 23.7893839286 0.0895784519 23.9665914745 23.6121763827
PWK/PhJ both 24.07625 0.0774046292 24.2293748206 23.9231251794
WSB/EiJ both 23.46575 0.0841027408 23.6321252832 23.2993747168




  GWAS USING LINEAR MIXED MODELS

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