Project measure / variable:   Auwerx1   liver_wt_HFD

ID, description, units MPD:111407   liver_wt_HFD   liver weight   [g]  HFD  
high-fat diet study
Data set, strains Auwerx1   BXD w/par   56 strains     sex: m     age: 29wks
Procedure organ weights
Ontology mappings

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  STRAIN COMPARISON PLOT
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Auwerx1 - liver weight HFD



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested56 strains
Mean of the strain means2.1227   g
Median of the strain means1.9651   g
SD of the strain means± 0.77868
Coefficient of variation (CV)0.3668
Min–max range of strain means0.99655   –   4.654   g
Mean sample size per strain4.3   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 55 134.0638 2.4375 13.288 < 0.0001
Residuals 183 33.5692 0.1834


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
BXD1 m 1.0281 0.12089   5 0.05407 0.1176 0.8197, 1.121 -1.41
BXD100 m 3.1044 0.7616   5 0.3406 0.2453 2.4001, 4.2398 1.26
BXD101 m 2.6345 0.35378   4 0.17689 0.1343 2.3357, 3.098 0.66
BXD11 m 1.9619 0.39012   4 0.19506 0.1989 1.5671, 2.4113 -0.21
BXD12 m 1.0213 0.20142   5 0.09008 0.1972 0.7006, 1.1584 -1.41
BXD16 m 2.5182 0.48927   5 0.21881 0.1943 1.92, 3.06 0.51
BXD2 m 1.9392 0.44164   5 0.19751 0.2277 1.2505, 2.4208 -0.24
BXD27 m 1.5615 0.24738   4 0.12369 0.1584 1.296, 1.81 -0.72
BXD32 m 1.6903 0.5386   3 0.31096 0.3186 1.301, 2.305 -0.56
BXD34 m 1.2837 0.09315   5 0.04166 0.0726 1.1604, 1.4206 -1.08
BXD39 m 3.2844 0.22063   5 0.09867 0.0672 3.046, 3.613 1.49
BXD40 m 0.99655 0.1045   4 0.05225 0.1049 0.8778, 1.1326 -1.45
BXD43 m 1.3274 0.16808   3 0.09704 0.1266 1.2215, 1.5212 -1.02
BXD44 m 2.3695 0.48728   7 0.18418 0.2056 1.4002, 2.8483 0.32
BXD45 m 1.7492 0.20686   4 0.10343 0.1183 1.4625, 1.9566 -0.48
BXD48 m 1.9683 0.67153   5 0.30032 0.3412 1.0855, 2.8889 -0.2
BXD48a m 3.3153 0.67359   2   0.4763 0.2032 2.839, 3.7916 1.53
BXD49 m 2.9249 1.1622   4 0.5811 0.3973 1.889, 4.5907 1.03
BXD50 m 1.2352 0.0848   5 0.03792 0.0687 1.1728, 1.372 -1.14
BXD51 m 2.5455 1.175   3 0.67841 0.4616 1.7018, 3.8876 0.54
BXD53 m 2.7193 0.3719   5 0.16632 0.1368 2.4315, 3.342 0.77
BXD55 m 2.0198 0.249   4 0.1245 0.1233 1.7828, 2.338 -0.13
BXD56 m 1.5393 0.01485   2   0.0105 0.0096 1.5288, 1.5498 -0.75
BXD6 m 1.4758 0.26848   5 0.12007 0.1819 1.107, 1.827 -0.83
BXD60 m 4.654 0.40653   3 0.23471 0.0874 4.236, 5.048 3.25
BXD61 m 3.2446 0.33482   5 0.14974 0.1032 2.8918, 3.71 1.44
BXD62 m 1.5604 0.53155   4 0.26577 0.3406 1.1127, 2.3162 -0.72
BXD63 m 1.3567 0.06527   2   0.04615 0.0481 1.3105, 1.4028 -0.98
BXD64 m 2.0511 0.3465   4 0.17325 0.1689 1.5357, 2.2659 -0.09
BXD65 m 3.7833 0.35006   4 0.17503 0.0925 3.368, 4.2204 2.13
BXD65a m 2.8169 0.57285   4 0.28642 0.2034 2.0677, 3.3867 0.89
BXD66 m 1.6227 0.14454   5 0.06464 0.0891 1.4745, 1.8482 -0.64
BXD67 m 2.8596 0.33381   5 0.14928 0.1167 2.486, 3.248 0.95
BXD68 m 1.3515 0.14318   3 0.08266 0.1059 1.2137, 1.4995 -0.99
BXD69 m 1.685 0.30129   5 0.13474 0.1788 1.4422, 2.1072 -0.56
BXD70 m 2.455 0.69034   3 0.39857 0.2812 1.669, 2.963 0.43
BXD71 m 2.3015 0.6622   3 0.38232 0.2877 1.5579, 2.8276 0.23
BXD73 m 1.2411 0.20394   4 0.10197 0.1643 1.0455, 1.508 -1.13
BXD73a m 1.7155 0.3296   5 0.1474 0.1921 1.3084, 2.2143 -0.52
BXD73b m 1.6919 0.22082   5 0.09875 0.1305 1.4453, 1.9336 -0.55
BXD75 m 2.6266 0.34846   5 0.15584 0.1327 2.0822, 2.9185 0.65
BXD77 m 2.3866 0.40222   5 0.17988 0.1685 2.085, 3.07 0.34
BXD79 m 1.9887 0.25709   5 0.11497 0.1293 1.5935, 2.2226 -0.17
BXD8 m 1.3288 0.17829   5 0.07973 0.1342 1.0645, 1.51 -1.02
BXD81 m 2.0543 0.14581   3 0.08418 0.071 1.9076, 2.1992 -0.09
BXD83 m 1.7348 0.26938   4 0.13469 0.1553 1.3601, 1.9527 -0.5
BXD84 m 2.693 0.45309   3 0.26159 0.1682 2.291, 3.184 0.73
BXD85 m 3.0543 0.31265   4 0.15633 0.1024 2.762, 3.3456 1.2
BXD87 m 1.4977 0.16018   5 0.07163 0.1069 1.38, 1.7763 -0.8
BXD89 m 1.8566 0.29251   4 0.14625 0.1575 1.5692, 2.2599 -0.34
BXD90 m 1.2887 0.15754   4 0.07877 0.1222 1.0642, 1.4031 -1.07
BXD95 m 1.7528 0.34991   5 0.15648 0.1996 1.2879, 2.0908 -0.48
BXD98 m 3.6481 0.51217   5 0.22905 0.1404 2.7498, 4.0347 1.96
BXD99 m 2.1378 0.72372   5 0.32366 0.3385 1.5097, 3.3518 0.02
C57BL/6J m 2.2712 0.73405   5 0.32828 0.3232 1.4679, 3.4347 0.19
DBA/2J m 1.9468 0.17523   5 0.07836 0.09 1.7378, 2.1542 -0.23


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
BXD1 m 1.02814 0.191540064 1.4060508285 0.6502291715
BXD100 m 3.10442 0.191540064 3.4823308285 2.7265091715
BXD101 m 2.63445 0.2141483017 3.056967151 2.211932849
BXD11 m 1.96185 0.2141483017 2.384367151 1.539332849
BXD12 m 1.02132 0.191540064 1.3992308285 0.6434091715
BXD16 m 2.5182 0.191540064 2.8961108285 2.1402891715
BXD2 m 1.93922 0.191540064 2.3171308285 1.5613091715
BXD27 m 1.5615 0.2141483017 1.984017151 1.138982849
BXD32 m 1.6903333333 0.2472771593 2.178214115 1.2024525517
BXD34 m 1.2837 0.191540064 1.6616108285 0.9057891715
BXD39 m 3.2844 0.191540064 3.6623108285 2.9064891715
BXD40 m 0.99655 0.2141483017 1.419067151 0.574032849
BXD43 m 1.3274 0.2472771593 1.8152807817 0.8395192183
BXD44 m 2.3695142857 0.1618809 2.6889072303 2.0501213411
BXD45 m 1.749225 0.2141483017 2.171742151 1.326707849
BXD48 m 1.96834 0.191540064 2.3462508285 1.5904291715
BXD48a m 3.3153 0.3028514327 3.9128294852 2.7177705148
BXD49 m 2.9249 0.2141483017 3.347417151 2.502382849
BXD50 m 1.23516 0.191540064 1.6130708285 0.8572491715
BXD51 m 2.5455 0.2472771593 3.0333807817 2.0576192183
BXD53 m 2.7193 0.191540064 3.0972108285 2.3413891715
BXD55 m 2.01975 0.2141483017 2.442267151 1.597232849
BXD56 m 1.5393 0.3028514327 2.1368294852 0.9417705148
BXD6 m 1.47584 0.191540064 1.8537508285 1.0979291715
BXD60 m 4.654 0.2472771593 5.1418807817 4.1661192183
BXD61 m 3.2446 0.191540064 3.6225108285 2.8666891715
BXD62 m 1.5604 0.2141483017 1.982917151 1.137882849
BXD63 m 1.35665 0.3028514327 1.9541794852 0.7591205148
BXD64 m 2.05105 0.2141483017 2.473567151 1.628532849
BXD65 m 3.78335 0.2141483017 4.205867151 3.360832849
BXD65a m 2.816925 0.2141483017 3.239442151 2.394407849
BXD66 m 1.62266 0.191540064 2.0005708285 1.2447491715
BXD67 m 2.8596 0.191540064 3.2375108285 2.4816891715
BXD68 m 1.3514666667 0.2472771593 1.8393474483 0.863585885
BXD69 m 1.685 0.191540064 2.0629108285 1.3070891715
BXD70 m 2.455 0.2472771593 2.9428807817 1.9671192183
BXD71 m 2.3015 0.2472771593 2.7893807817 1.8136192183
BXD73 m 1.241075 0.2141483017 1.663592151 0.818557849
BXD73a m 1.71552 0.191540064 2.0934308285 1.3376091715
BXD73b m 1.69194 0.191540064 2.0698508285 1.3140291715
BXD75 m 2.6266 0.191540064 3.0045108285 2.2486891715
BXD77 m 2.38656 0.191540064 2.7644708285 2.0086491715
BXD79 m 1.98866 0.191540064 2.3665708285 1.6107491715
BXD8 m 1.3288 0.191540064 1.7067108285 0.9508891715
BXD81 m 2.0543333333 0.2472771593 2.542214115 1.5664525517
BXD83 m 1.734775 0.2141483017 2.157292151 1.312257849
BXD84 m 2.6930333333 0.2472771593 3.180914115 2.2051525517
BXD85 m 3.054275 0.2141483017 3.476792151 2.631757849
BXD87 m 1.49772 0.191540064 1.8756308285 1.1198091715
BXD89 m 1.8566 0.2141483017 2.279117151 1.434082849
BXD90 m 1.28875 0.2141483017 1.711267151 0.866232849
BXD95 m 1.75278 0.191540064 2.1306908285 1.3748691715
BXD98 m 3.6481 0.191540064 4.0260108285 3.2701891715
BXD99 m 2.13784 0.191540064 2.5157508285 1.7599291715
C57BL/6J m 2.27116 0.191540064 2.6490708285 1.8932491715
DBA/2J m 1.94682 0.191540064 2.3247308285 1.5689091715




  GWAS USING LINEAR MIXED MODELS