Project measure / variable:   Auwerx1   rbc_HFD

ID, description, units MPD:111397   rbc_HFD   red blood cell count (RBC; per volume x 106)   [n/µL]  HFD  
high-fat diet study
Data set, strains Auwerx1   BXD w/par   27 strains     sex: m     age: 29wks
Procedure complete blood count
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  STRAIN COMPARISON PLOT
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Auwerx1 - red blood cell count (RBC; per volume x 106) HFD



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested27 strains
Mean of the strain means10.19   n/µL
Median of the strain means10.215   n/µL
SD of the strain means± 0.84656
Coefficient of variation (CV)0.0831
Min–max range of strain means8.4467   –   12.35   n/µL
Mean sample size per strain3.8   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 26 64.0848 2.4648 5.2478 < 0.0001
Residuals 76 35.6962 0.4697


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
BXD100 m 9.55 0.05657   2   0.04 0.0059 9.51, 9.59 -0.76
BXD101 m 10.105 0.47788   4 0.23894 0.0473 9.56, 10.66 -0.1
BXD39 m 9.32 0.52972   5 0.2369 0.0568 8.56, 10.02 -1.03
BXD43 m 9.76 0.52574   3 0.30353 0.0539 9.38, 10.36 -0.51
BXD48 m 10.444 0.69201   5 0.30948 0.0663 9.74, 11.5 0.3
BXD49 m 9.615 0.92842   4 0.46421 0.0966 8.4, 10.38 -0.68
BXD50 m 11.012 0.52623   5 0.23534 0.0478 10.24, 11.5 0.97
BXD63 m 9.3 0.70711   2   0.5 0.076 8.8, 9.8 -1.05
BXD64 m 10.233 0.53379   3 0.30818 0.0522 9.74, 10.8 0.05
BXD65 m 10.21 0.35346   4 0.17673 0.0346 9.84, 10.56 0.02
BXD65a m 10.215 1.5999   4 0.79993 0.1566 8.14, 11.94 0.03
BXD66 m 11.46 0.34857   5 0.15588 0.0304 11.05, 11.97 1.5
BXD68 m 11.035 0.0755   4 0.03775 0.0068 10.98, 11.14 1.0
BXD69 m 10.322 0.34258   4 0.17129 0.0332 9.96, 10.76 0.16
BXD71 m 10.64 0.51069   3 0.29484 0.048 10.08, 11.08 0.53
BXD73a m 10.265 0.16263   2   0.115 0.0158 10.15, 10.38 0.09
BXD73b m 10.344 0.25274   5 0.11303 0.0244 10.06, 10.64 0.18
BXD79 m 10.172 1.0289   5 0.46016 0.1012 9.08, 11.72 -0.02
BXD81 m 12.35 0.09899   2   0.07 0.008 12.28, 12.42 2.55
BXD85 m 9.61 0.07071   2   0.05 0.0074 9.56, 9.66 -0.69
BXD89 m 8.4467 1.1524   3 0.66537 0.1364 7.12, 9.2 -2.06
BXD90 m 9.62 0.36166   3 0.20881 0.0376 9.28, 10.0 -0.67
BXD95 m 11.104 0.63441   5 0.28372 0.0571 10.02, 11.68 1.08
BXD98 m 10.716 0.35788   5 0.16005 0.0334 10.44, 11.32 0.62
BXD99 m 11.112 0.90339   5 0.40401 0.0813 10.1, 12.12 1.09
C57BL/6J m 8.9125 0.37053   4 0.18526 0.0416 8.6, 9.4 -1.51
DBA/2J m 9.256 0.99691   5 0.44583 0.1077 8.03, 10.44 -1.1


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
BXD100 m 9.55 0.484606279 10.5151770523 8.5848229477
BXD101 m 10.105 0.3426683861 10.7874832387 9.4225167613
BXD39 m 9.32 0.306491922 9.9304315661 8.7095684339
BXD43 m 9.76 0.3956793699 10.5480637632 8.9719362368
BXD48 m 10.444 0.306491922 11.0544315661 9.8335684339
BXD49 m 9.615 0.3426683861 10.2974832387 8.9325167613
BXD50 m 11.012 0.306491922 11.6224315661 10.4015684339
BXD63 m 9.3 0.484606279 10.2651770523 8.3348229477
BXD64 m 10.2333333333 0.3956793699 11.0213970965 9.4452695702
BXD65 m 10.21 0.3426683861 10.8924832387 9.5275167613
BXD65a m 10.215 0.3426683861 10.8974832387 9.5325167613
BXD66 m 11.46 0.306491922 12.0704315661 10.8495684339
BXD68 m 11.035 0.3426683861 11.7174832387 10.3525167613
BXD69 m 10.3225 0.3426683861 11.0049832387 9.6400167613
BXD71 m 10.64 0.3956793699 11.4280637632 9.8519362368
BXD73a m 10.265 0.484606279 11.2301770523 9.2998229477
BXD73b m 10.344 0.306491922 10.9544315661 9.7335684339
BXD79 m 10.172 0.306491922 10.7824315661 9.5615684339
BXD81 m 12.35 0.484606279 13.3151770523 11.3848229477
BXD85 m 9.61 0.484606279 10.5751770523 8.6448229477
BXD89 m 8.4466666667 0.3956793699 9.2347304298 7.6586029035
BXD90 m 9.62 0.3956793699 10.4080637632 8.8319362368
BXD95 m 11.104 0.306491922 11.7144315661 10.4935684339
BXD98 m 10.716 0.306491922 11.3264315661 10.1055684339
BXD99 m 11.112 0.306491922 11.7224315661 10.5015684339
C57BL/6J m 8.9125 0.3426683861 9.5949832387 8.2300167613
DBA/2J m 9.256 0.306491922 9.8664315661 8.6455684339




  GWAS USING LINEAR MIXED MODELS