Project measure / variable:   Auwerx1   rantes_HFD

ID, description, units MPD:111391   rantes_HFD   blood regulated on activation, normal T cell expressed and secreted (RANTES) protein amount   [pg/mL]  HFD  
high-fat diet study
Data set, strains Auwerx1   BXD w/par   33 strains     sex: m     age: 29wks
Procedure cell signaling molecule detection
Ontology mappings

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  STRAIN COMPARISON PLOT
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Auwerx1 - blood regulated on activation, normal T cell expressed and secreted (RANTES) protein amount HFD



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested33 strains
Mean of the strain means11.828   pg/mL
Median of the strain means10.008   pg/mL
SD of the strain means± 6.8431
Coefficient of variation (CV)0.5786
Min–max range of strain means1.04   –   30.192   pg/mL
Mean sample size per strain3.9   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 32 6089.2176 190.2881 1.5794 0.0467
Residuals 95 11445.4071 120.478


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
BXD100 m 6.89 2.2928   4 1.1464 0.3328 5.04, 9.76 -0.72
BXD43 m 8.6133 3.3182   3 1.9157 0.3852 5.92, 12.32 -0.47
BXD44 m 22.3 11.116   2   7.86 0.4985 14.44, 30.16 1.53
BXD45 m 7.06 2.1896   4 1.0948 0.3101 4.92, 9.36 -0.7
BXD48 m 10.008 1.5309   5 0.68462 0.153 7.72, 11.96 -0.27
BXD48a m 5.98 5.3457   2   3.78 0.8939 2.2, 9.76 -0.85
BXD51 m 8.48 2.1231   4 1.0616 0.2504 5.8, 10.84 -0.49
BXD55 m 9.65 3.962   4 1.981 0.4106 6.68, 15.24 -0.32
BXD56 m 22.12 2.1496   2   1.52 0.0972 20.6, 23.64 1.5
BXD61 m 25.568 17.281   5 7.7284 0.6759 7.72, 51.44 2.01
BXD62 m 11.79 1.3594   4 0.67968 0.1153 10.52, 13.56 -0.01
BXD64 m 11.81 5.552   4 2.776 0.4701 5.64, 17.56 0.0
BXD65 m 5.55 3.3203   4 1.6602 0.5983 1.44, 9.48 -0.92
BXD66 m 3.14 4.4174   4 2.2087 1.4068 0.8, 9.76 -1.27
BXD68 m 13.77 3.6107   4 1.8054 0.2622 8.48, 16.4 0.28
BXD69 m 8.728 2.7053   5 1.2099 0.31 6.68, 13.2 -0.45
BXD70 m 5.52 1.8543   3 1.0706 0.3359 4.04, 7.6 -0.92
BXD71 m 1.04 0.41569   3 0.24 0.3997 0.8, 1.52 -1.58
BXD73 m 16.6 6.2649   4 3.1325 0.3774 8.76, 22.12 0.7
BXD73a m 26.32 5.9425   5 2.6575 0.2258 19.2, 34.76 2.12
BXD73b m 19.224 4.0566   5 1.8141 0.211 15.68, 24.16 1.08
BXD75 m 30.192 46.112   5 20.622 1.5273 7.6, 112.6 2.68
BXD81 m 7.3333 2.0821   3 1.2021 0.2839 5.2, 9.36 -0.66
BXD83 m 10.293 2.5153   3 1.4522 0.2444 7.4, 11.96 -0.22
BXD84 m 7.1867 1.2108   3 0.69908 0.1685 6.08, 8.48 -0.68
BXD85 m 10.4 10.216   3 5.8983 0.9823 1.28, 21.44 -0.21
BXD87 m 9.92 1.8602   4 0.93009 0.1875 8.0, 12.4 -0.28
BXD89 m 12.98 1.8944   4 0.94721 0.1459 10.28, 14.64 0.17
BXD90 m 10.33 6.2603   4 3.1301 0.606 2.48, 17.56 -0.22
BXD98 m 12.688 6.3428   5 2.8366 0.4999 3.72, 21.16 0.13
BXD99 m 8.168 3.578   5 1.6001 0.438 2.32, 11.16 -0.53
C57BL/6J m 9.312 7.835   5 3.5039 0.8414 0.8, 16.4 -0.37
DBA/2J m 11.35 3.9703   4 1.9852 0.3498 8.88, 17.28 -0.07


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
BXD100 m 6.89 5.4881228568 17.7853014088 -4.0053014088
BXD43 m 8.6133333333 6.3371384174 21.1941437359 -3.9674770692
BXD44 m 22.3 7.761377776 37.7082830185 6.8917169815
BXD45 m 7.06 5.4881228568 17.9553014088 -3.8353014088
BXD48 m 10.008 4.9087263107 19.7530538342 0.2629461658
BXD48a m 5.98 7.761377776 21.3882830185 -9.4282830185
BXD51 m 8.48 5.4881228568 19.3753014088 -2.4153014088
BXD55 m 9.65 5.4881228568 20.5453014088 -1.2453014088
BXD56 m 22.12 7.761377776 37.5282830185 6.7117169815
BXD61 m 25.568 4.9087263107 35.3130538342 15.8229461658
BXD62 m 11.79 5.4881228568 22.6853014088 0.8946985912
BXD64 m 11.81 5.4881228568 22.7053014088 0.9146985912
BXD65 m 5.55 5.4881228568 16.4453014088 -5.3453014088
BXD66 m 3.14 5.4881228568 14.0353014088 -7.7553014088
BXD68 m 13.77 5.4881228568 24.6653014088 2.8746985912
BXD69 m 8.728 4.9087263107 18.4730538342 -1.0170538342
BXD70 m 5.52 6.3371384174 18.1008104026 -7.0608104026
BXD71 m 1.04 6.3371384174 13.6208104026 -11.5408104026
BXD73 m 16.6 5.4881228568 27.4953014088 5.7046985912
BXD73a m 26.32 4.9087263107 36.0650538342 16.5749461658
BXD73b m 19.224 4.9087263107 28.9690538342 9.4789461658
BXD75 m 30.192 4.9087263107 39.9370538342 20.4469461658
BXD81 m 7.3333333333 6.3371384174 19.9141437359 -5.2474770692
BXD83 m 10.2933333333 6.3371384174 22.8741437359 -2.2874770692
BXD84 m 7.1866666667 6.3371384174 19.7674770692 -5.3941437359
BXD85 m 10.4 6.3371384174 22.9808104026 -2.1808104026
BXD87 m 9.92 5.4881228568 20.8153014088 -0.9753014088
BXD89 m 12.98 5.4881228568 23.8753014088 2.0846985912
BXD90 m 10.33 5.4881228568 21.2253014088 -0.5653014088
BXD98 m 12.688 4.9087263107 22.4330538342 2.9429461658
BXD99 m 8.168 4.9087263107 17.9130538342 -1.5770538342
C57BL/6J m 9.312 4.9087263107 19.0570538342 -0.4330538342
DBA/2J m 11.35 5.4881228568 22.2453014088 0.4546985912




  GWAS USING LINEAR MIXED MODELS