Project measure / variable:   Auwerx1   mip1_beta_HFD

ID, description, units MPD:111389   mip1_beta_HFD   blood macrophage inflammatory protein 1 beta subunit (MIP1 beta) amount   [pg/mL]  HFD  
high-fat diet study
Data set, strains Auwerx1   BXD w/par   32 strains     sex: m     age: 29wks
Procedure cell signaling molecule detection
Ontology mappings

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  STRAIN COMPARISON PLOT
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Auwerx1 - blood macrophage inflammatory protein 1 beta subunit (MIP1 beta) amount HFD



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested32 strains
Mean of the strain means38.104   pg/mL
Median of the strain means35.005   pg/mL
SD of the strain means± 10.327
Coefficient of variation (CV)0.271
Min–max range of strain means27.597   –   75.47   pg/mL
Mean sample size per strain3.8   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 31 13508.9192 435.7716 1.7189 0.0252
Residuals 91 23070.702 253.5242


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
BXD100 m 30.8 0.0   4 0.0 0.0 30.8, 30.8 -0.71
BXD43 m 27.597 17.167   3 9.9115 0.6221 8.87, 42.59 -1.02
BXD44 m 30.8 0.0   2   0.0 0.0 30.8, 30.8 -0.71
BXD45 m 31.18 4.665   4 2.3325 0.1496 25.59, 37.0 -0.67
BXD48 m 30.8 4.768e-07   5 2.132e-07 0.0 30.8, 30.8 -0.71
BXD48a m 30.8 0.0   2   0.0 0.0 30.8, 30.8 -0.71
BXD51 m 33.182 4.4187   4 2.2094 0.1332 30.8, 39.8 -0.48
BXD55 m 35.998 6.1087   4 3.0543 0.1697 30.8, 42.59 -0.2
BXD56 m 36.7 8.3439   2   5.9 0.2274 30.8, 42.6 -0.14
BXD61 m 46.768 19.703   5 8.8116 0.4213 30.8, 72.8 0.84
BXD62 m 34.15 5.78   4 2.89 0.1693 30.8, 42.76 -0.38
BXD65 m 30.8 0.0   4 0.0 0.0 30.8, 30.8 -0.71
BXD66 m 30.8 0.0   4 0.0 0.0 30.8, 30.8 -0.71
BXD68 m 35.43 5.5371   4 2.7685 0.1563 30.8, 42.59 -0.26
BXD69 m 47.31 10.515   4 5.2576 0.2223 37.0, 61.54 0.89
BXD70 m 35.867 4.6058   3 2.6592 0.1284 30.8, 39.8 -0.22
BXD71 m 42.34 9.9939   3 5.77 0.236 30.8, 48.11 0.41
BXD73 m 40.285 9.6036   4 4.8018 0.2384 30.8, 53.54 0.21
BXD73a m 35.058 3.9236   5 1.7547 0.1119 30.8, 38.77 -0.29
BXD73b m 61.83 14.953   5 6.6872 0.2418 39.8, 77.04 2.3
BXD75 m 33.37 5.1609   5 2.308 0.1547 30.8, 42.59 -0.46
BXD81 m 44.15 11.876   3 6.8566 0.269 30.8, 53.54 0.59
BXD83 m 30.8 0.0   3 0.0 0.0 30.8, 30.8 -0.71
BXD84 m 51.15 22.017   3 12.711 0.4305 30.8, 74.52 1.26
BXD85 m 38.83 7.0651   3 4.079 0.182 31.33, 45.36 0.07
BXD87 m 30.8 0.0   4 0.0 0.0 30.8, 30.8 -0.71
BXD89 m 75.47 71.47   4 35.733 0.947 37.0, 182.5 3.62
BXD90 m 29.68 3.3899   4 1.695 0.1142 24.69, 32.26 -0.82
BXD98 m 51.58 17.719   5 7.9242 0.3436 31.32, 69.36 1.3
BXD99 m 34.952 6.4078   5 2.8656 0.1833 30.8, 45.36 -0.31
C57BL/6J m 35.596 7.5718   5 3.3862 0.2127 30.8, 48.12 -0.24
DBA/2J m 34.458 7.315   4 3.6575 0.2123 30.8, 45.43 -0.35


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
BXD100 m 30.8 7.9612216028 46.6139887131 14.9860112869
BXD43 m 27.5966666667 9.1928268709 45.8570879476 9.3362453857
BXD44 m 30.8 11.2588675638 53.1643573133 8.4356426867
BXD45 m 31.18 7.9612216028 46.9939887131 15.3660112869
BXD48 m 30.8 7.1207330751 44.9444615032 16.6555384968
BXD48a m 30.8 11.2588675638 53.1643573133 8.4356426867
BXD51 m 33.1825 7.9612216028 48.9964887131 17.3685112869
BXD55 m 35.9975 7.9612216028 51.8114887131 20.1835112869
BXD56 m 36.7 11.2588675638 59.0643573133 14.3356426867
BXD61 m 46.768 7.1207330751 60.9124615032 32.6235384968
BXD62 m 34.15 7.9612216028 49.9639887131 18.3360112869
BXD65 m 30.8 7.9612216028 46.6139887131 14.9860112869
BXD66 m 30.8 7.9612216028 46.6139887131 14.9860112869
BXD68 m 35.43 7.9612216028 51.2439887131 19.6160112869
BXD69 m 47.31 7.9612216028 63.1239887131 31.4960112869
BXD70 m 35.8666666667 9.1928268709 54.1270879476 17.6062453857
BXD71 m 42.34 9.1928268709 60.600421281 24.079578719
BXD73 m 40.285 7.9612216028 56.0989887131 24.4710112869
BXD73a m 35.058 7.1207330751 49.2024615032 20.9135384968
BXD73b m 61.828 7.1207330751 75.9724615032 47.6835384968
BXD75 m 33.37 7.1207330751 47.5144615032 19.2255384968
BXD81 m 44.15 9.1928268709 62.410421281 25.889578719
BXD83 m 30.8 9.1928268709 49.060421281 12.539578719
BXD84 m 51.1466666667 9.1928268709 69.4070879476 32.8862453857
BXD85 m 38.83 9.1928268709 57.090421281 20.569578719
BXD87 m 30.8 7.9612216028 46.6139887131 14.9860112869
BXD89 m 75.465 7.9612216028 91.2789887131 59.6510112869
BXD90 m 29.68 7.9612216028 45.4939887131 13.8660112869
BXD98 m 51.576 7.1207330751 65.7204615032 37.4315384968
BXD99 m 34.952 7.1207330751 49.0964615032 20.8075384968
C57BL/6J m 35.596 7.1207330751 49.7404615032 21.4515384968
DBA/2J m 34.4575 7.9612216028 50.2714887131 18.6435112869




  GWAS USING LINEAR MIXED MODELS