Project measure / variable:   Auwerx1   chol_tot_HFD

ID, description, units MPD:111371   chol_tot_HFD   blood total cholesterol amount   [mmol/L]  HFD  
high-fat diet study
Data set, strains Auwerx1   BXD w/par   52 strains     sex: m     age: 29wks
Procedure lipid profile
Ontology mappings

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  STRAIN COMPARISON PLOT
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Auwerx1 - blood total cholesterol amount HFD



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested52 strains
Mean of the strain means4.8146   mmol/L
Median of the strain means4.545   mmol/L
SD of the strain means± 1.0667
Coefficient of variation (CV)0.2215
Min–max range of strain means3.125   –   8.0   mmol/L
Mean sample size per strain4.2   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 51 236.996 4.647 7.892 < 0.0001
Residuals 168 98.9215 0.5888


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page:
Strain Sex Mean SD N mice SEM CV Min, Max Z score
BXD1 m 3.2 0.27386   5 0.12247 0.0856 2.9, 3.6 -1.51
BXD100 m 6.52 0.91214   5 0.40792 0.1399 5.1, 7.6 1.6
BXD101 m 5.025 0.51881   4 0.25941 0.1032 4.4, 5.5 0.2
BXD16 m 4.94 0.93434   5 0.41785 0.1891 3.6, 5.9 0.12
BXD27 m 4.525 1.0626   4 0.53131 0.2348 3.8, 6.1 -0.27
BXD32 m 3.8333 0.15275   3 0.08819 0.0398 3.7, 4.0 -0.92
BXD34 m 4.24 0.18166   5 0.08124 0.0428 4.0, 4.5 -0.54
BXD39 m 5.74 0.54129   5 0.24207 0.0943 5.3, 6.6 0.87
BXD40 m 3.125 0.46458   4 0.23229 0.1487 2.7, 3.7 -1.58
BXD43 m 3.7 0.34641   3 0.2 0.0936 3.3, 3.9 -1.04
BXD44 m 3.9 1.9222   5 0.85965 0.4929 2.3, 6.1 -0.86
BXD45 m 5.1 0.3266   4 0.1633 0.064 4.7, 5.5 0.27
BXD48 m 4.72 0.25884   5 0.11576 0.0548 4.4, 5.1 -0.09
BXD48a m 6.0667 0.76376   3 0.44096 0.1259 5.4, 6.9 1.17
BXD49 m 4.375 1.3525   4 0.67623 0.3091 3.2, 6.1 -0.41
BXD50 m 4.46 0.77974   5 0.34871 0.1748 3.8, 5.8 -0.33
BXD51 m 5.175 0.75   4 0.375 0.1449 4.3, 5.8 0.34
BXD53 m 5.36 1.0213   5 0.45673 0.1905 3.7, 6.5 0.51
BXD55 m 5.3 0.29439   4 0.1472 0.0555 5.0, 5.6 0.46
BXD56 m 3.85 0.77782   2   0.55 0.202 3.3, 4.4 -0.9
BXD6 m 3.66 0.4827   5 0.21587 0.1319 2.9, 4.1 -1.08
BXD60 m 8.0 0.40825   4 0.20412 0.051 7.6, 8.4 2.99
BXD61 m 3.58 2.008   5 0.898 0.5609 1.8, 6.6 -1.16
BXD62 m 6.125 0.39476   4 0.19738 0.0645 5.8, 6.6 1.23
BXD63 m 3.35 0.35355   2   0.25 0.1055 3.1, 3.6 -1.37
BXD64 m 4.7 0.56569   4 0.28284 0.1204 3.9, 5.1 -0.11
BXD65 m 7.1 0.6377   4 0.31885 0.0898 6.2, 7.7 2.14
BXD65a m 6.025 1.3793   4 0.68966 0.2289 4.0, 6.9 1.13
BXD66 m 4.3 0.40825   4 0.20412 0.0949 4.0, 4.9 -0.48
BXD67 m 4.46 0.81425   5 0.36414 0.1826 3.5, 5.5 -0.33
BXD68 m 4.55 0.49329   4 0.24664 0.1084 4.0, 5.1 -0.25
BXD69 m 3.98 0.46043   5 0.20591 0.1157 3.4, 4.4 -0.78
BXD70 m 5.5 0.2   3 0.11547 0.0364 5.3, 5.7 0.64
BXD71 m 3.4667 0.94516   3 0.54569 0.2726 2.4, 4.2 -1.26
BXD73 m 3.575 0.85   4 0.425 0.2378 2.7, 4.4 -1.16
BXD73a m 4.54 0.26077   5 0.11662 0.0574 4.3, 4.9 -0.26
BXD73b m 4.3 0.32404   5 0.14491 0.0754 3.9, 4.8 -0.48
BXD75 m 6.06 0.68411   5 0.30594 0.1129 5.4, 7.2 1.17
BXD77 m 5.3 0.43012   5 0.19235 0.0812 4.9, 5.9 0.46
BXD79 m 4.16 0.55946   5 0.2502 0.1345 3.4, 4.9 -0.61
BXD81 m 5.2 0.2   3 0.11547 0.0385 5.0, 5.4 0.36
BXD83 m 4.3 0.72572   4 0.36286 0.1688 3.4, 5.1 -0.48
BXD84 m 6.3 0.6   3 0.34641 0.0952 5.7, 6.9 1.39
BXD85 m 4.3 0.4761   4 0.23805 0.1107 3.8, 4.8 -0.48
BXD87 m 5.54 0.23022   5 0.10296 0.0416 5.3, 5.9 0.68
BXD89 m 3.45 0.36968   4 0.18484 0.1072 3.1, 3.9 -1.28
BXD90 m 4.2 0.8756   4 0.4378 0.2085 3.6, 5.5 -0.58
BXD95 m 5.225 1.1117   4 0.55584 0.2128 3.7, 6.3 0.38
BXD98 m 6.8 0.64807   5 0.28983 0.0953 5.8, 7.3 1.86
BXD99 m 5.12 0.45497   5 0.20347 0.0889 4.8, 5.9 0.29
C57BL/6J m 5.6 0.56125   5 0.251 0.1002 5.0, 6.4 0.74
DBA/2J m 4.44 0.58566   5 0.26192 0.1319 3.7, 5.3 -0.35


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
BXD1 m 3.2 0.3431671466 3.8774754988 2.5225245012
BXD100 m 6.52 0.3431671466 7.1974754988 5.8425245012
BXD101 m 5.025 0.3836725337 5.7824406342 4.2675593658
BXD16 m 4.94 0.3431671466 5.6174754988 4.2625245012
BXD27 m 4.525 0.3836725337 5.2824406342 3.7675593658
BXD32 m 3.8333333333 0.4430268812 4.7079504415 2.9587162252
BXD34 m 4.24 0.3431671466 4.9174754988 3.5625245012
BXD39 m 5.74 0.3431671466 6.4174754988 5.0625245012
BXD40 m 3.125 0.3836725337 3.8824406342 2.3675593658
BXD43 m 3.7 0.4430268812 4.5746171081 2.8253828919
BXD44 m 3.9 0.3431671466 4.5774754988 3.2225245012
BXD45 m 5.1 0.3836725337 5.8574406342 4.3425593658
BXD48 m 4.72 0.3431671466 5.3974754988 4.0425245012
BXD48a m 6.0666666667 0.4430268812 6.9412837748 5.1920495585
BXD49 m 4.375 0.3836725337 5.1324406342 3.6175593658
BXD50 m 4.46 0.3431671466 5.1374754988 3.7825245012
BXD51 m 5.175 0.3836725337 5.9324406342 4.4175593658
BXD53 m 5.36 0.3431671466 6.0374754988 4.6825245012
BXD55 m 5.3 0.3836725337 6.0574406342 4.5425593658
BXD56 m 3.85 0.5425949006 4.9211828176 2.7788171824
BXD6 m 3.66 0.3431671466 4.3374754988 2.9825245012
BXD60 m 8.0 0.3836725337 8.7574406342 7.2425593658
BXD61 m 3.58 0.3431671466 4.2574754988 2.9025245012
BXD62 m 6.125 0.3836725337 6.8824406342 5.3675593658
BXD63 m 3.35 0.5425949006 4.4211828176 2.2788171824
BXD64 m 4.7 0.3836725337 5.4574406342 3.9425593658
BXD65 m 7.1 0.3836725337 7.8574406342 6.3425593658
BXD65a m 6.025 0.3836725337 6.7824406342 5.2675593658
BXD66 m 4.3 0.3836725337 5.0574406342 3.5425593658
BXD67 m 4.46 0.3431671466 5.1374754988 3.7825245012
BXD68 m 4.55 0.3836725337 5.3074406342 3.7925593658
BXD69 m 3.98 0.3431671466 4.6574754988 3.3025245012
BXD70 m 5.5 0.4430268812 6.3746171081 4.6253828919
BXD71 m 3.4666666667 0.4430268812 4.3412837748 2.5920495585
BXD73 m 3.575 0.3836725337 4.3324406342 2.8175593658
BXD73a m 4.54 0.3431671466 5.2174754988 3.8625245012
BXD73b m 4.3 0.3431671466 4.9774754988 3.6225245012
BXD75 m 6.06 0.3431671466 6.7374754988 5.3825245012
BXD77 m 5.3 0.3431671466 5.9774754988 4.6225245012
BXD79 m 4.16 0.3431671466 4.8374754988 3.4825245012
BXD81 m 5.2 0.4430268812 6.0746171081 4.3253828919
BXD83 m 4.3 0.3836725337 5.0574406342 3.5425593658
BXD84 m 6.3 0.4430268812 7.1746171081 5.4253828919
BXD85 m 4.3 0.3836725337 5.0574406342 3.5425593658
BXD87 m 5.54 0.3431671466 6.2174754988 4.8625245012
BXD89 m 3.45 0.3836725337 4.2074406342 2.6925593658
BXD90 m 4.2 0.3836725337 4.9574406342 3.4425593658
BXD95 m 5.225 0.3836725337 5.9824406342 4.4675593658
BXD98 m 6.8 0.3431671466 7.4774754988 6.1225245012
BXD99 m 5.12 0.3431671466 5.7974754988 4.4425245012
C57BL/6J m 5.6 0.3431671466 6.2774754988 4.9225245012
DBA/2J m 4.44 0.3431671466 5.1174754988 3.7625245012




  GWAS USING LINEAR MIXED MODELS