Project measure / variable:   Auwerx1   chol_tot_CD

ID, description, units MPD:111370   chol_tot_CD   blood total cholesterol amount   [mmol/L]  CD  
high-fat diet study
Data set, strains Auwerx1   BXD w/par   54 strains     sex: m     age: 29wks
Procedure lipid profile
Ontology mappings

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  STRAIN COMPARISON PLOT
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Auwerx1 - blood total cholesterol amount CD

BXD60BXD100BXD75BXD65bBXD65aBXD44BXD45BXD65BXD16BXD61BXD95BXD66BXD68BXD62BXD48aBXD71BXD70BXD90DBA/2JBXD87BXD27BXD101BXD55BXD77C57BL/6JBXD84BXD99BXD69BXD50BXD48BXD85BXD73aBXD81BXD32BXD83BXD73bBXD12BXD51BXD98BXD79BXD64BXD1BXD49BXD56BXD34BXD73BXD53BXD67BXD40BXD6BXD89BXD63BXD39BXD43 mmol/L 1.52.02.53.03.54.04.55.05.56.06.5femalemale


  MEASURE SUMMARY
Measure Summary Male
Number of strains tested54 strains
Mean of the strain means3.404   mmol/L
Median of the strain means3.27   mmol/L
SD of the strain means± 0.61673
Coefficient of variation (CV)0.1812
Min–max range of strain means2.5   –   5.15   mmol/L
Mean sample size per strain4.2   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 53 83.7394 1.58 7.4206 < 0.0001
Residuals 174 37.0481 0.2129


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page: 1 - 10 / 54 (54)
Strain
Sex
Mean
SD
N mice
SEM
CV
Min, Max
Z score
BXD1 m 2.92 0.39623   5 0.1772 0.1357 2.6, 3.6 -0.78
BXD100 m 4.6 0.6   3 0.34641 0.1304 4.0, 5.2 1.94
BXD101 m 3.475 0.15   4 0.075 0.0432 3.3, 3.6 0.12
BXD12 m 3.02 0.14832   5 0.06633 0.0491 2.8, 3.2 -0.62
BXD16 m 4.15 0.3873   4 0.19365 0.0933 3.6, 4.5 1.21
BXD27 m 3.48 0.31937   5 0.14283 0.0918 3.1, 3.9 0.12
BXD32 m 3.06 0.251   5 0.11225 0.082 2.7, 3.3 -0.56
BXD34 m 2.85 0.17321   4 0.0866 0.0608 2.7, 3.0 -0.9
BXD39 m 2.58 0.73959   5 0.33076 0.2867 1.6, 3.5 -1.34
BXD40 m 2.7333 0.05774   3 0.03333 0.0211 2.7, 2.8 -1.09
BXD43 m 2.5 0.2   3 0.11547 0.08 2.3, 2.7 -1.47
BXD44 m 4.3857 1.3545   7 0.51197 0.3089 2.9, 6.3 1.59
BXD45 m 4.26 0.20736   5 0.09274 0.0487 4.1, 4.6 1.39
BXD48 m 3.16 0.30496   5 0.13638 0.0965 2.8, 3.6 -0.4
BXD48a m 3.74 0.19494   5 0.08718 0.0521 3.6, 4.0 0.54
BXD49 m 2.875 0.4272   4 0.2136 0.1486 2.4, 3.4 -0.86
BXD50 m 3.225 0.22174   4 0.11087 0.0688 3.0, 3.5 -0.29
BXD51 m 3.0 0.34641   3 0.2 0.1155 2.8, 3.4 -0.66
BXD53 m 2.775 0.74106   4 0.37053 0.267 1.7, 3.4 -1.02
BXD55 m 3.46 0.23022   5 0.10296 0.0665 3.2, 3.8 0.09
BXD56 m 2.8667 0.37859   3 0.21858 0.1321 2.6, 3.3 -0.87
BXD6 m 2.725 0.34034   4 0.17017 0.1249 2.3, 3.0 -1.1
BXD60 m 5.15 0.78528   4 0.39264 0.1525 4.2, 6.1 2.83
BXD61 m 4.1333 0.11547   3 0.06667 0.0279 4.0, 4.2 1.18
BXD62 m 3.775 0.82614   4 0.41307 0.2188 3.2, 5.0 0.6
BXD63 m 2.6 0.1   3 0.05774 0.0385 2.5, 2.7 -1.3
BXD64 m 2.925 0.05   4 0.025 0.0171 2.9, 3.0 -0.78
BXD65 m 4.25 0.3873   4 0.19365 0.0911 3.9, 4.8 1.37
BXD65a m 4.44 0.41593   5 0.18601 0.0937 3.9, 5.0 1.68
BXD65b m 4.475 0.09574   4 0.04787 0.0214 4.4, 4.6 1.74
BXD66 m 3.84 0.20736   5 0.09274 0.054 3.6, 4.1 0.71
BXD67 m 2.75 0.35119   4 0.17559 0.1277 2.4, 3.1 -1.06
BXD68 m 3.8333 0.45092   3 0.26034 0.1176 3.4, 4.3 0.7
BXD69 m 3.24 0.19494   5 0.08718 0.0602 3.1, 3.5 -0.27
BXD70 m 3.55 0.3873   4 0.19365 0.1091 3.2, 4.1 0.24
BXD71 m 3.55 0.23805   4 0.11902 0.0671 3.2, 3.7 0.24
BXD73 m 2.825 0.4272   4 0.2136 0.1512 2.5, 3.4 -0.94
BXD73a m 3.1 0.7746   5 0.34641 0.2499 2.3, 4.1 -0.49
BXD73b m 3.02 0.31145   5 0.13928 0.1031 2.5, 3.3 -0.62
BXD75 m 4.5 0.29155   5 0.13038 0.0648 4.3, 5.0 1.78
BXD77 m 3.42 0.32711   5 0.14629 0.0956 3.1, 3.8 0.03
BXD79 m 2.96 0.13416   5 0.06 0.0453 2.8, 3.1 -0.72
BXD81 m 3.075 0.43493   4 0.21747 0.1414 2.5, 3.5 -0.53
BXD83 m 3.0333 0.25166   3 0.1453 0.083 2.8, 3.3 -0.6
BXD84 m 3.3667 0.41633   3 0.24037 0.1237 2.9, 3.7 -0.06
BXD85 m 3.12 0.31937   5 0.14283 0.1024 2.7, 3.5 -0.46
BXD87 m 3.52 0.19235   5 0.08602 0.0546 3.3, 3.8 0.19
BXD89 m 2.675 0.17078   4 0.08539 0.0638 2.5, 2.9 -1.18
BXD90 m 3.55 0.42032   4 0.21016 0.1184 3.1, 4.1 0.24
BXD95 m 4.075 0.61305   4 0.30653 0.1504 3.3, 4.8 1.09
BXD98 m 3.0 0.60828   3 0.35119 0.2028 2.3, 3.4 -0.66
BXD99 m 3.3 0.21213   5 0.09487 0.0643 3.0, 3.5 -0.17
C57BL/6J m 3.375 0.66018   4 0.33009 0.1956 2.5, 4.1 -0.05
DBA/2J m 3.55 0.34157   4 0.17078 0.0962 3.1, 3.9 0.24


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
BXD1 m 2.92 0.2063588868 3.3272887683 2.5127112317
BXD100 m 4.6 0.2664081773 5.1258075389 4.0741924611
BXD101 m 3.475 0.2307162493 3.9303626862 3.0196373138
BXD12 m 3.02 0.2063588868 3.4272887683 2.6127112317
BXD16 m 4.15 0.2307162493 4.6053626862 3.6946373138
BXD27 m 3.48 0.2063588868 3.8872887683 3.0727112317
BXD32 m 3.06 0.2063588868 3.4672887683 2.6527112317
BXD34 m 2.85 0.2307162493 3.3053626862 2.3946373138
BXD39 m 2.58 0.2063588868 2.9872887683 2.1727112317
BXD40 m 2.7333333333 0.2664081773 3.2591408723 2.2075257944
BXD43 m 2.5 0.2664081773 3.0258075389 1.9741924611
BXD44 m 4.3857142857 0.1744050912 4.7299361212 4.0414924503
BXD45 m 4.26 0.2063588868 4.6672887683 3.8527112317
BXD48 m 3.16 0.2063588868 3.5672887683 2.7527112317
BXD48a m 3.74 0.2063588868 4.1472887683 3.3327112317
BXD49 m 2.875 0.2307162493 3.3303626862 2.4196373138
BXD50 m 3.225 0.2307162493 3.6803626862 2.7696373138
BXD51 m 3.0 0.2664081773 3.5258075389 2.4741924611
BXD53 m 2.775 0.2307162493 3.2303626862 2.3196373138
BXD55 m 3.46 0.2063588868 3.8672887683 3.0527112317
BXD56 m 2.8666666667 0.2664081773 3.3924742056 2.3408591277
BXD6 m 2.725 0.2307162493 3.1803626862 2.2696373138
BXD60 m 5.15 0.2307162493 5.6053626862 4.6946373138
BXD61 m 4.1333333333 0.2664081773 4.6591408723 3.6075257944
BXD62 m 3.775 0.2307162493 4.2303626862 3.3196373138
BXD63 m 2.6 0.2664081773 3.1258075389 2.0741924611
BXD64 m 2.925 0.2307162493 3.3803626862 2.4696373138
BXD65 m 4.25 0.2307162493 4.7053626862 3.7946373138
BXD65a m 4.44 0.2063588868 4.8472887683 4.0327112317
BXD65b m 4.475 0.2307162493 4.9303626862 4.0196373138
BXD66 m 3.84 0.2063588868 4.2472887683 3.4327112317
BXD67 m 2.75 0.2307162493 3.2053626862 2.2946373138
BXD68 m 3.8333333333 0.2664081773 4.3591408723 3.3075257944
BXD69 m 3.24 0.2063588868 3.6472887683 2.8327112317
BXD70 m 3.55 0.2307162493 4.0053626862 3.0946373138
BXD71 m 3.55 0.2307162493 4.0053626862 3.0946373138
BXD73 m 2.825 0.2307162493 3.2803626862 2.3696373138
BXD73a m 3.1 0.2063588868 3.5072887683 2.6927112317
BXD73b m 3.02 0.2063588868 3.4272887683 2.6127112317
BXD75 m 4.5 0.2063588868 4.9072887683 4.0927112317
BXD77 m 3.42 0.2063588868 3.8272887683 3.0127112317
BXD79 m 2.96 0.2063588868 3.3672887683 2.5527112317
BXD81 m 3.075 0.2307162493 3.5303626862 2.6196373138
BXD83 m 3.0333333333 0.2664081773 3.5591408723 2.5075257944
BXD84 m 3.3666666667 0.2664081773 3.8924742056 2.8408591277
BXD85 m 3.12 0.2063588868 3.5272887683 2.7127112317
BXD87 m 3.52 0.2063588868 3.9272887683 3.1127112317
BXD89 m 2.675 0.2307162493 3.1303626862 2.2196373138
BXD90 m 3.55 0.2307162493 4.0053626862 3.0946373138
BXD95 m 4.075 0.2307162493 4.5303626862 3.6196373138
BXD98 m 3.0 0.2664081773 3.5258075389 2.4741924611
BXD99 m 3.3 0.2063588868 3.7072887683 2.8927112317
C57BL/6J m 3.375 0.2307162493 3.8303626862 2.9196373138
DBA/2J m 3.55 0.2307162493 4.0053626862 3.0946373138




  GWAS USING LINEAR MIXED MODELS

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