Project measure / variable:   Auwerx1   iron_HFD

ID, description, units MPD:111361   iron_HFD   blood iron amount   [µmol/L]  HFD  
high-fat diet study
Data set, strains Auwerx1   BXD w/par   52 strains     sex: m     age: 29wks
Procedure metabolic panel
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  STRAIN COMPARISON PLOT
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Auwerx1 - blood iron amount HFD



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested52 strains
Mean of the strain means26.75   µmol/L
Median of the strain means25.265   µmol/L
SD of the strain means± 8.1929
Coefficient of variation (CV)0.3063
Min–max range of strain means9.05   –   60.5   µmol/L
Mean sample size per strain4.1   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 51 13475.2167 264.2199 12.425 < 0.0001
Residuals 162 3444.9722 21.2653


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
BXD1 m 25.525 4.9406   4 2.4703 0.1936 19.0, 29.6 -0.15
BXD100 m 24.22 2.4468   5 1.0943 0.101 22.3, 28.5 -0.31
BXD101 m 21.4 4.4144   4 2.2072 0.2063 15.5, 26.2 -0.65
BXD16 m 19.68 2.3102   5 1.0332 0.1174 16.8, 22.7 -0.86
BXD27 m 23.85 4.0967   4 2.0484 0.1718 18.4, 27.8 -0.35
BXD32 m 22.0 4.3267   3 2.498 0.1967 18.4, 26.8 -0.58
BXD34 m 13.1 1.7464   5 0.78102 0.1333 11.0, 15.4 -1.67
BXD39 m 38.875 5.3068   4 2.6534 0.1365 35.3, 46.7 1.48
BXD40 m 22.75 3.3402   4 1.6701 0.1468 19.5, 27.1 -0.49
BXD43 m 20.367 1.7559   3 1.0138 0.0862 18.7, 22.2 -0.78
BXD44 m 21.62 1.4132   5 0.63198 0.0654 19.3, 23.1 -0.63
BXD45 m 25.5 1.8493   4 0.92466 0.0725 22.8, 27.0 -0.15
BXD48 m 25.28 3.7158   5 1.6617 0.147 22.4, 31.0 -0.18
BXD48a m 24.5 4.5177   3 2.6083 0.1844 19.6, 28.5 -0.27
BXD49 m 26.65 12.816   4 6.4081 0.4809 14.3, 38.4 -0.01
BXD50 m 15.9 2.0174   5 0.90222 0.1269 13.6, 19.0 -1.32
BXD51 m 25.25 3.304   4 1.652 0.1309 22.0, 29.0 -0.18
BXD53 m 21.867 1.6773   3 0.96839 0.0767 20.8, 23.8 -0.6
BXD55 m 28.5 4.1513   4 2.0757 0.1457 22.7, 31.6 0.21
BXD56 m 22.9 2.687   2   1.9 0.1173 21.0, 24.8 -0.47
BXD6 m 24.98 2.1394   5 0.95677 0.0856 22.1, 27.6 -0.22
BXD60 m 33.475 3.565   4 1.7825 0.1065 28.9, 37.5 0.82
BXD61 m 34.68 3.9009   5 1.7445 0.1125 30.7, 40.8 0.97
BXD62 m 16.775 4.3293   4 2.1646 0.2581 10.7, 20.9 -1.22
BXD63 m 30.8 5.5154   2   3.9 0.1791 26.9, 34.7 0.49
BXD64 m 32.075 3.6773   4 1.8386 0.1146 27.7, 36.7 0.65
BXD65 m 33.725 5.0441   4 2.522 0.1496 29.3, 39.7 0.85
BXD65a m 9.05 5.5194   4 2.7597 0.6099 4.6, 16.2 -2.16
BXD66 m 29.2 5.3097   4 2.6549 0.1818 22.7, 35.7 0.3
BXD67 m 24.78 2.3478   5 1.05 0.0947 21.7, 27.4 -0.24
BXD68 m 21.7 4.3947   4 2.1973 0.2025 15.8, 26.4 -0.62
BXD69 m 27.4 7.1764   5 3.2094 0.2619 21.1, 39.5 0.08
BXD70 m 31.733 2.444   3 1.4111 0.077 29.6, 34.4 0.61
BXD71 m 23.1 5.8026   3 3.3501 0.2512 16.5, 27.4 -0.45
BXD73 m 22.25 4.859   4 2.4295 0.2184 15.7, 26.9 -0.55
BXD73a m 24.5 4.5026   4 2.2513 0.1838 21.1, 31.0 -0.27
BXD73b m 29.64 4.603   5 2.0585 0.1553 24.6, 36.8 0.35
BXD75 m 38.22 4.0308   5 1.8026 0.1055 34.2, 43.8 1.4
BXD77 m 28.34 2.3416   5 1.0472 0.0826 24.7, 30.6 0.19
BXD79 m 15.28 6.1055   5 2.7305 0.3996 8.6, 24.9 -1.4
BXD81 m 60.5 1.51   3 0.87178 0.025 59.1, 62.1 4.12
BXD83 m 27.133 1.1015   3 0.63596 0.0406 26.4, 28.4 0.05
BXD84 m 35.0 3.005   3 1.7349 0.0859 32.7, 38.4 1.01
BXD85 m 27.625 4.7794   4 2.3897 0.173 22.4, 32.3 0.11
BXD87 m 35.42 7.0319   5 3.1447 0.1985 29.3, 46.8 1.06
BXD89 m 33.225 2.3114   4 1.1557 0.0696 30.8, 35.3 0.79
BXD90 m 25.625 3.1181   4 1.559 0.1217 22.3, 29.8 -0.14
BXD95 m 21.95 2.3274   4 1.1637 0.106 19.5, 25.1 -0.59
BXD98 m 21.86 1.1992   5 0.53628 0.0549 19.8, 22.9 -0.6
BXD99 m 35.02 8.55   5 3.8237 0.2441 28.2, 47.8 1.01
C57BL/6J m 22.94 3.396   5 1.5187 0.148 20.1, 28.3 -0.46
DBA/2J m 43.24 8.8263   5 3.9472 0.2041 32.6, 55.1 2.01


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
BXD1 m 25.525 2.3057135711 30.0781289867 20.9718710133
BXD100 m 24.22 2.0622929127 28.2924423698 20.1475576302
BXD101 m 21.4 2.3057135711 25.9531289867 16.8468710133
BXD16 m 19.68 2.0622929127 23.7524423698 15.6075576302
BXD27 m 23.85 2.3057135711 28.4031289867 19.2968710133
BXD32 m 22.0 2.6624087019 27.2575004922 16.7424995078
BXD34 m 13.1 2.0622929127 17.1724423698 9.0275576302
BXD39 m 38.875 2.3057135711 43.4281289867 34.3218710133
BXD40 m 22.75 2.3057135711 27.3031289867 18.1968710133
BXD43 m 20.3666666667 2.6624087019 25.6241671589 15.1091661744
BXD44 m 21.62 2.0622929127 25.6924423698 17.5475576302
BXD45 m 25.5 2.3057135711 30.0531289867 20.9468710133
BXD48 m 25.28 2.0622929127 29.3524423698 21.2075576302
BXD48a m 24.5 2.6624087019 29.7575004922 19.2424995078
BXD49 m 26.65 2.3057135711 31.2031289867 22.0968710133
BXD50 m 15.9 2.0622929127 19.9724423698 11.8275576302
BXD51 m 25.25 2.3057135711 29.8031289867 20.6968710133
BXD53 m 21.8666666667 2.6624087019 27.1241671589 16.6091661744
BXD55 m 28.5 2.3057135711 33.0531289867 23.9468710133
BXD56 m 22.9 3.2607714032 29.3390967642 16.4609032358
BXD6 m 24.98 2.0622929127 29.0524423698 20.9075576302
BXD60 m 33.475 2.3057135711 38.0281289867 28.9218710133
BXD61 m 34.68 2.0622929127 38.7524423698 30.6075576302
BXD62 m 16.775 2.3057135711 21.3281289867 12.2218710133
BXD63 m 30.8 3.2607714032 37.2390967642 24.3609032358
BXD64 m 32.075 2.3057135711 36.6281289867 27.5218710133
BXD65 m 33.725 2.3057135711 38.2781289867 29.1718710133
BXD65a m 9.05 2.3057135711 13.6031289867 4.4968710133
BXD66 m 29.2 2.3057135711 33.7531289867 24.6468710133
BXD67 m 24.78 2.0622929127 28.8524423698 20.7075576302
BXD68 m 21.7 2.3057135711 26.2531289867 17.1468710133
BXD69 m 27.4 2.0622929127 31.4724423698 23.3275576302
BXD70 m 31.7333333333 2.6624087019 36.9908338256 26.4758328411
BXD71 m 23.1 2.6624087019 28.3575004922 17.8424995078
BXD73 m 22.25 2.3057135711 26.8031289867 17.6968710133
BXD73a m 24.5 2.3057135711 29.0531289867 19.9468710133
BXD73b m 29.64 2.0622929127 33.7124423698 25.5675576302
BXD75 m 38.22 2.0622929127 42.2924423698 34.1475576302
BXD77 m 28.34 2.0622929127 32.4124423698 24.2675576302
BXD79 m 15.28 2.0622929127 19.3524423698 11.2075576302
BXD81 m 60.5 2.6624087019 65.7575004922 55.2424995078
BXD83 m 27.1333333333 2.6624087019 32.3908338256 21.8758328411
BXD84 m 35.0 2.6624087019 40.2575004922 29.7424995078
BXD85 m 27.625 2.3057135711 32.1781289867 23.0718710133
BXD87 m 35.42 2.0622929127 39.4924423698 31.3475576302
BXD89 m 33.225 2.3057135711 37.7781289867 28.6718710133
BXD90 m 25.625 2.3057135711 30.1781289867 21.0718710133
BXD95 m 21.95 2.3057135711 26.5031289867 17.3968710133
BXD98 m 21.86 2.0622929127 25.9324423698 17.7875576302
BXD99 m 35.02 2.0622929127 39.0924423698 30.9475576302
C57BL/6J m 22.94 2.0622929127 27.0124423698 18.8675576302
DBA/2J m 43.24 2.0622929127 47.3124423698 39.1675576302




  GWAS USING LINEAR MIXED MODELS