Project measure / variable:   Auwerx1   alk_phosph_CD

ID, description, units MPD:111342   alk_phosph_CD   blood alkaline phosphatase amount   [U/L]  CD  
high-fat diet study
Data set, strains Auwerx1   BXD w/par   54 strains     sex: m     age: 29wks
Procedure metabolic panel
Ontology mappings

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  STRAIN COMPARISON PLOT
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Auwerx1 - blood alkaline phosphatase amount CD



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested54 strains
Mean of the strain means93.42   U/L
Median of the strain means87.6   U/L
SD of the strain means± 30.302
Coefficient of variation (CV)0.3244
Min–max range of strain means48.0   –   198.5   U/L
Mean sample size per strain4.2   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 53 195884.105 3695.9265 31.0997 < 0.0001
Residuals 174 20678.3643 118.8412


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
BXD1 m 127.6 15.323   5 6.8527 0.1201 111.0, 151.0 1.13
BXD100 m 94.33 25.716   3 14.847 0.2726 65.0, 113.0 0.03
BXD101 m 77.25 3.6856   4 1.8428 0.0477 73.0, 82.0 -0.53
BXD12 m 105.8 9.0111   5 4.0299 0.0852 99.0, 121.0 0.41
BXD16 m 183.5 16.052   4 8.026 0.0875 161.0, 199.0 2.97
BXD27 m 81.6 7.3348   5 3.2802 0.0899 72.0, 91.0 -0.39
BXD32 m 84.0 8.2765   5 3.7014 0.0985 73.0, 92.0 -0.31
BXD34 m 76.0 6.1644   4 3.0822 0.0811 72.0, 85.0 -0.57
BXD39 m 86.0 9.8489   5 4.4045 0.1145 77.0, 102.0 -0.24
BXD40 m 150.3 9.2916   3 5.3645 0.0618 140.0, 158.0 1.88
BXD43 m 88.0 7.0   3 4.0415 0.0795 80.0, 93.0 -0.18
BXD44 m 76.43 15.967   7 6.035 0.2089 61.0, 108.0 -0.56
BXD45 m 106.6 12.779   5 5.7149 0.1199 97.0, 129.0 0.44
BXD48 m 94.2 4.4385   5 1.9849 0.0471 89.0, 99.0 0.03
BXD48a m 77.8 4.3818   5 1.9596 0.0563 74.0, 83.0 -0.52
BXD49 m 82.0 8.2865   4 4.1433 0.1011 73.0, 90.0 -0.38
BXD50 m 73.0 1.4142   4 0.70711 0.0194 71.0, 74.0 -0.67
BXD51 m 110.0 7.2111   3 4.1633 0.0656 102.0, 116.0 0.55
BXD53 m 68.75 7.0887   4 3.5444 0.1031 60.0, 75.0 -0.81
BXD55 m 77.6 10.04   5 4.49 0.1294 69.0, 90.0 -0.52
BXD56 m 67.67 4.0415   3 2.3333 0.0597 64.0, 72.0 -0.85
BXD6 m 48.0 4.0825   4 2.0412 0.0851 45.0, 54.0 -1.5
BXD60 m 91.0 19.305   4 9.6523 0.2121 68.0, 115.0 -0.08
BXD61 m 104.7 11.504   3 6.6416 0.1099 93.0, 116.0 0.37
BXD62 m 52.75 8.7702   4 4.3851 0.1663 40.0, 59.0 -1.34
BXD63 m 73.33 6.3509   3 3.6667 0.0866 66.0, 77.0 -0.66
BXD64 m 109.8 10.046   4 5.0229 0.0915 101.0, 124.0 0.54
BXD65 m 93.5 10.599   4 5.2994 0.1134 85.0, 109.0 0.0
BXD65a m 102.4 11.349   5 5.0754 0.1108 89.0, 114.0 0.3
BXD65b m 95.25 6.2383   4 3.1192 0.0655 87.0, 101.0 0.06
BXD66 m 78.6 6.0663   5 2.7129 0.0772 72.0, 86.0 -0.49
BXD67 m 48.5 8.3467   4 4.1733 0.1721 38.0, 58.0 -1.48
BXD68 m 70.67 11.846   3 6.8394 0.1676 57.0, 78.0 -0.75
BXD69 m 141.6 5.1769   5 2.3152 0.0366 136.0, 148.0 1.59
BXD70 m 94.75 12.066   4 6.0329 0.1273 81.0, 108.0 0.04
BXD71 m 117.2 8.0571   4 4.0285 0.0687 106.0, 124.0 0.78
BXD73 m 57.25 5.5603   4 2.7801 0.0971 52.0, 63.0 -1.19
BXD73a m 74.2 13.161   5 5.8856 0.1774 60.0, 94.0 -0.63
BXD73b m 64.0 3.6742   5 1.6432 0.0574 58.0, 67.0 -0.97
BXD75 m 78.0 12.207   5 5.4589 0.1565 65.0, 97.0 -0.51
BXD77 m 87.2 13.646   5 6.1025 0.1565 75.0, 103.0 -0.21
BXD79 m 109.8 4.6043   5 2.0591 0.0419 104.0, 114.0 0.54
BXD81 m 198.5 26.287   4 13.143 0.1324 169.0, 224.0 3.47
BXD83 m 126.7 19.348   3 11.17 0.1527 115.0, 149.0 1.1
BXD84 m 62.67 1.1547   3 0.66667 0.0184 62.0, 64.0 -1.01
BXD85 m 129.2 12.578   5 5.6249 0.0974 109.0, 143.0 1.18
BXD87 m 78.6 18.105   5 8.0969 0.2303 58.0, 96.0 -0.49
BXD89 m 100.2 9.215   4 4.6075 0.0919 89.0, 111.0 0.22
BXD90 m 137.2 4.717   4 2.3585 0.0344 133.0, 144.0 1.44
BXD95 m 111.8 6.5   4 3.25 0.0582 103.0, 118.0 0.61
BXD98 m 70.33 7.5719   3 4.3716 0.1077 65.0, 79.0 -0.76
BXD99 m 95.4 7.8294   5 3.5014 0.0821 86.0, 107.0 0.07
C57BL/6J m 57.5 12.288   4 6.1441 0.2137 40.0, 67.0 -1.19
DBA/2J m 95.5 5.4467   4 2.7234 0.057 88.0, 100.0 0.07


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
BXD1 m 127.6 4.8752676656 137.2222740581 117.9777259419
BXD100 m 94.3333333333 6.2939434924 106.7556357266 81.9110309401
BXD101 m 77.25 5.4507149544 88.008029446 66.491970554
BXD12 m 105.8 4.8752676656 115.4222740581 96.1777259419
BXD16 m 183.5 5.4507149544 194.258029446 172.741970554
BXD27 m 81.6 4.8752676656 91.2222740581 71.9777259419
BXD32 m 84.0 4.8752676656 93.6222740581 74.3777259419
BXD34 m 76.0 5.4507149544 86.758029446 65.241970554
BXD39 m 86.0 4.8752676656 95.6222740581 76.3777259419
BXD40 m 150.3333333333 6.2939434924 162.7556357266 137.9110309401
BXD43 m 88.0 6.2939434924 100.4223023932 75.5776976068
BXD44 m 76.4285714286 4.1203532105 84.5608772889 68.2962655682
BXD45 m 106.6 4.8752676656 116.2222740581 96.9777259419
BXD48 m 94.2 4.8752676656 103.8222740581 84.5777259419
BXD48a m 77.8 4.8752676656 87.4222740581 68.1777259419
BXD49 m 82.0 5.4507149544 92.758029446 71.241970554
BXD50 m 73.0 5.4507149544 83.758029446 62.241970554
BXD51 m 110.0 6.2939434924 122.4223023932 97.5776976068
BXD53 m 68.75 5.4507149544 79.508029446 57.991970554
BXD55 m 77.6 4.8752676656 87.2222740581 67.9777259419
BXD56 m 67.6666666667 6.2939434924 80.0889690599 55.2443642734
BXD6 m 48.0 5.4507149544 58.758029446 37.241970554
BXD60 m 91.0 5.4507149544 101.758029446 80.241970554
BXD61 m 104.6666666667 6.2939434924 117.0889690599 92.2443642734
BXD62 m 52.75 5.4507149544 63.508029446 41.991970554
BXD63 m 73.3333333333 6.2939434924 85.7556357266 60.9110309401
BXD64 m 109.75 5.4507149544 120.508029446 98.991970554
BXD65 m 93.5 5.4507149544 104.258029446 82.741970554
BXD65a m 102.4 4.8752676656 112.0222740581 92.7777259419
BXD65b m 95.25 5.4507149544 106.008029446 84.491970554
BXD66 m 78.6 4.8752676656 88.2222740581 68.9777259419
BXD67 m 48.5 5.4507149544 59.258029446 37.741970554
BXD68 m 70.6666666667 6.2939434924 83.0889690599 58.2443642734
BXD69 m 141.6 4.8752676656 151.2222740581 131.9777259419
BXD70 m 94.75 5.4507149544 105.508029446 83.991970554
BXD71 m 117.25 5.4507149544 128.008029446 106.491970554
BXD73 m 57.25 5.4507149544 68.008029446 46.491970554
BXD73a m 74.2 4.8752676656 83.8222740581 64.5777259419
BXD73b m 64.0 4.8752676656 73.6222740581 54.3777259419
BXD75 m 78.0 4.8752676656 87.6222740581 68.3777259419
BXD77 m 87.2 4.8752676656 96.8222740581 77.5777259419
BXD79 m 109.8 4.8752676656 119.4222740581 100.1777259419
BXD81 m 198.5 5.4507149544 209.258029446 187.741970554
BXD83 m 126.6666666667 6.2939434924 139.0889690599 114.2443642734
BXD84 m 62.6666666667 6.2939434924 75.0889690599 50.2443642734
BXD85 m 129.2 4.8752676656 138.8222740581 119.5777259419
BXD87 m 78.6 4.8752676656 88.2222740581 68.9777259419
BXD89 m 100.25 5.4507149544 111.008029446 89.491970554
BXD90 m 137.25 5.4507149544 148.008029446 126.491970554
BXD95 m 111.75 5.4507149544 122.508029446 100.991970554
BXD98 m 70.3333333333 6.2939434924 82.7556357266 57.9110309401
BXD99 m 95.4 4.8752676656 105.0222740581 85.7777259419
C57BL/6J m 57.5 5.4507149544 68.258029446 46.741970554
DBA/2J m 95.5 5.4507149544 106.258029446 84.741970554




  GWAS USING LINEAR MIXED MODELS