Project measure / variable:   CSNA03   trial_init_latency_do_acq_JAX

ID, description, units MPD:110533   trial_init_latency_do_acq_JAX   mean latency across trials between illumination of central hole and initiation of trial (reversal learning assay), DO   [centiseconds/n]  acquisition  
Data set, strains CSNA03   DO population w/par   9 strains     sex: both     age:
Procedure operant conditioning chamber
Ontology mappings

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Plot Options Bins number: (min: 10, max: 40)


Distribution of Individual Animals with Boxplots.





  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested9 strains9 strains
Mean of the strain means517.0   centiseconds/n 370.5   centiseconds/n
Median of the strain means368.8   centiseconds/n 352.0   centiseconds/n
SD of the strain means± 455.2 ± 194.6
Coefficient of variation (CV)0.8805 0.5251
Min–max range of strain means189.2   –   1651.0   centiseconds/n 71.74   –   759.8   centiseconds/n
Mean sample size per strain31.9   mice 23.2   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 0.2365 0.2365 0.0 0.9987
strain 8 5136545.5796 642068.1975 7.1522 < 0.0001
sex:strain 8 2708418.1737 338552.2717 3.7712 0.0003
Residuals 478 42911325.6265 89772.6478


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page:
Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 1651.0 544.9   3 314.6 0.33 1276.0, 2276.0 2.49
129S1/SvImJ m 548.9 362.2   4 181.1 0.6599 224.7, 1019.0 0.92
A/J f 711.1 321.6   6 131.3 0.4523 140.0, 1067.0 0.43
A/J m 759.8 273.8   5 122.4 0.3603 596.1, 1240.0 2.0
C57BL/6J f 373.3 163.0   14 43.554 0.4365 95.32, 734.7 -0.32
C57BL/6J m 215.0 115.6   11 34.848 0.5375 31.4, 421.9 -0.8
CAST/EiJ f 189.2 78.86   10 24.939 0.4169 66.19, 356.0 -0.72
CAST/EiJ m 330.7 286.2   8 101.2 0.8653 74.05, 786.8 -0.2
J:DO f 338.9 327.4   226 21.781 0.9662 19.909, 2578.0 -0.39
J:DO m 352.0 280.7   154 22.617 0.7973 38.739, 1463.0 -0.1
NOD/ShiLtJ f 254.5 255.9   8 90.47 1.0056 53.92, 655.4 -0.58
NOD/ShiLtJ m 307.1 269.2   11 81.16 0.8765 58.95, 992.9 -0.33
NZO/HlLtJ f 537.3 621.1   3 358.6 1.1558 128.3, 1252.0 0.04
NZO/HlLtJ m 71.74 0.14142   2   0.1 0.002 71.64, 71.84 -1.54
PWK/PhJ f 229.0 137.4   9 45.811 0.6002 96.05, 462.5 -0.63
PWK/PhJ m 374.7 185.6   8 65.61 0.4952 82.43, 703.5 0.02
WSB/EiJ f 368.8 427.4   8 151.1 1.1591 50.56, 1264.0 -0.33
WSB/EiJ m 374.6 198.5   6 81.02 0.5298 144.8, 705.0 0.02


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 1651.0 172.986172621 1990.9073240359 1311.0926759641
129S1/SvImJ m 548.85 149.8104199932 843.2183775474 254.4816224525
A/J f 711.1 122.3196957118 951.4507738008 470.7492261992
A/J m 759.82 133.9945131371 1023.111081049 496.528918951
C57BL/6J f 373.33 80.0770377976 530.6765163262 215.9834836738
C57BL/6J m 215.0472727273 90.3390823278 392.5580833583 37.5364620962
CAST/EiJ f 189.159 94.748428881 375.3339088357 2.9840911643
CAST/EiJ m 330.73625 105.9319638696 538.8861259307 122.5863740693
J:DO f 338.8921150442 19.9304818082 378.0543014521 299.7299286364
J:DO m 352.0363246753 24.1441353362 399.4780843775 304.5945649732
NOD/ShiLtJ f 254.47 105.9319638696 462.6198759307 46.3201240693
NOD/ShiLtJ m 307.1036363636 90.3390823278 484.6144469947 129.5928257326
NZO/HlLtJ f 537.3333333334 172.986172621 877.2406573692 197.4260092975
NZO/HlLtJ m 71.74 211.8639277392 488.0397518614 -344.5597518614
PWK/PhJ f 228.9655555556 99.8736133288 425.2111405872 32.7199705239
PWK/PhJ m 374.72875 105.9319638696 582.8786259307 166.5788740693
WSB/EiJ f 368.77375 105.9319638696 576.9236259307 160.6238740693
WSB/EiJ m 374.6 122.3196957118 614.9507738008 134.2492261993


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 1099.925 114.419598252 1324.7525620521 875.0974379479
A/J both 735.46 90.714714228 913.7089045033 557.2110954967
C57BL/6J both 294.1886363636 60.3603383404 412.793035619 175.5842371083
CAST/EiJ both 259.947625 71.0613216608 399.5788066268 120.3164433732
J:DO both 345.4642198598 15.6537805037 376.2229479214 314.7054917981
NOD/ShiLtJ both 280.7868181818 69.6109380146 417.5680840234 144.0055523403
NZO/HlLtJ both 304.5366666667 136.7575772994 573.2570009983 35.8163323351
PWK/PhJ both 301.8471527778 72.7947793606 444.8844735147 158.8098320409
WSB/EiJ both 371.686875 80.9068738246 530.6639687247 212.7097812753




GWAS analysis not available: Strain panel must be either Inbred, HMDP, BXD, BXH, CXB, or AXB/BXA