Project measure / variable:   CSNA03   antici_incorrect_cc_acq_JAX

ID, description, units MPD:110515   antici_incorrect_cc_acq_JAX   mean number of anticipatory nose pokes made in incorrect flanking hole without prior successful nose poke in central hole (reversal learning assay), CC   [n]  acquisition  
Data set, strains CSNA03   CC w/par   51 strains     sex: both     age:
Procedure operant conditioning chamber
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  STRAIN COMPARISON PLOT
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CSNA03 - mean number of anticipatory nose pokes made in incorrect flanking hole without prior successful nose poke in central hole (reversal learning assay), CC acquisition



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested50 strains48 strains
Mean of the strain means0.49926   n 0.79462   n
Median of the strain means0.39916   n 0.45441   n
SD of the strain means± 0.40686 ± 2.2272
Coefficient of variation (CV)0.8149 2.8028
Min–max range of strain means0.025   –   1.8384   n 0.05278   –   15.669   n
Mean sample size per strain3.0   mice 2.8   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 38.7735 38.7735 0.6749 0.4125
strain 30 713.1979 23.7733 0.4138 0.9972
sex:strain 30 838.8181 27.9606 0.4867 0.989
Residuals 172 9881.3325 57.4496


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page:
Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 0.35303 0.35655   3 0.20586 1.01 0.14286, 0.76471 -0.36
129S1/SvImJ m 0.66309 0.48934   2   0.34602 0.738 0.31707, 1.0091 -0.06
A/J f 1.3457 0.71148   6 0.29046 0.5287 0.15, 2.2133 2.08
A/J m 1.0536 0.51383   5 0.22979 0.4877 0.46154, 1.795 0.12
C57BL/6J f 0.43861 0.3241   14 0.08662 0.7389 0.05, 0.93056 -0.15
C57BL/6J m 0.14975 0.07677   10 0.02428 0.5127 0.03448, 0.27711 -0.29
CAST/EiJ f 0.40796 0.3267   10 0.10331 0.8008 0.12088, 0.99213 -0.22
CAST/EiJ m 0.49649 0.32969   7 0.12461 0.664 0.08163, 0.9816 -0.13
CC001/UncJ f 0.30644 0.18818   3 0.10865 0.6141 0.15942, 0.51852 -0.47
CC001/UncJ m 0.45728 0.02797   2   0.01978 0.0612 0.4375, 0.47706 -0.15
CC002/UncJ f 0.15129 0.07793   3 0.04499 0.5151 0.1, 0.24096 -0.86
CC002/UncJ m 0.25662 0.14329   4 0.07165 0.5584 0.05, 0.35714 -0.24
CC003/UncJ f 0.33072 0.25558   2   0.18072 0.7728 0.15, 0.51145 -0.41
CC003/UncJ m 0.29348 0.20998   3 0.12123 0.7155 0.15625, 0.53521 -0.23
CC004/TauUncJ f 0.59091 0.0   1   0.0 0.0 0.59091, 0.59091 0.23
CC004/TauUncJ m 0.54657 0.41941   2   0.29657 0.7674 0.25, 0.84314 -0.11
CC005/TauUncJ f 0.54407 0.35114   3 0.20273 0.6454 0.17391, 0.87245 0.11
CC005/TauUncJ m 0.17692 0.03263   2   0.02307 0.1844 0.15385, 0.2 -0.28
CC006/TauUncJ f 0.36089 0.00913582   2   0.00646 0.0253 0.35443, 0.36735 -0.34
CC006/TauUncJ m 0.64655 0.0   1   0.0 0.0 0.64655, 0.64655 -0.07
CC007/UncJ f 0.3 0.0   1   0.0 0.0 0.3, 0.3 -0.49
CC008/GeniUncJ f 0.14894 0.0   1   0.0 0.0 0.14894, 0.14894 -0.86
CC008/GeniUncJ m 0.11111 0.0   1   0.0 0.0 0.11111, 0.11111 -0.31
CC009/UncJ f 0.5122 0.0   1   0.0 0.0 0.5122, 0.5122 0.03
CC009/UncJ m 0.05278 0.00393151   2   0.00278 0.0745 0.05, 0.05556 -0.33
CC011/UncJ f 1.7118 1.1906   3 0.68741 0.6956 0.98182, 3.0857 2.98
CC011/UncJ m 0.59091 0.48212   2   0.34091 0.8159 0.25, 0.93182 -0.09
CC012/GeniUncJ f 0.53545 0.56825   3 0.32808 1.0613 0.16, 1.1892 0.09
CC012/GeniUncJ m 0.50526 0.0   1   0.0 0.0 0.50526, 0.50526 -0.13
CC013/GeniUncJ f 1.7138 1.3673   2   0.96685 0.7978 0.74699, 2.6807 2.99
CC013/GeniUncJ m 2.5385 2.0669   2   1.4615 0.8143 1.0769, 4.0 0.78
CC015/UncJ f 0.52809 0.0   1   0.0 0.0 0.52809, 0.52809 0.07
CC015/UncJ m 0.25275 0.0   1   0.0 0.0 0.25275, 0.25275 -0.24
CC016/GeniUncJ f 0.27672 0.13343   3 0.07703 0.4822 0.14, 0.40659 -0.55
CC016/GeniUncJ m 0.45154 0.50299   4 0.25149 1.1139 0.1, 1.1981 -0.15
CC017/UncJ f 0.11848 0.04458   2   0.03152 0.3762 0.08696, 0.15 -0.94
CC017/UncJ m 0.24903 0.27932   3 0.16127 1.1216 0.04762, 0.5679 -0.24
CC018/UncJ f 0.46848 0.19885   2   0.14061 0.4245 0.32787, 0.60909 -0.08
CC018/UncJ m 0.13269 0.11694   2   0.08269 0.8813 0.05, 0.21538 -0.3
CC019/TauUncJ f 0.30612 0.1452   4 0.0726 0.4743 0.15, 0.43651 -0.47
CC019/TauUncJ m 0.32928 0.19793   4 0.09896 0.6011 0.125, 0.59211 -0.21
CC023/GeniUncJ f 0.24563 0.06453   2   0.04563 0.2627 0.2, 0.29126 -0.62
CC023/GeniUncJ m 0.49112 0.0   1   0.0 0.0 0.49112, 0.49112 -0.14
CC025/GeniUncJ f 0.86478 0.36468   3 0.21055 0.4217 0.48438, 1.2114 0.9
CC025/GeniUncJ m 0.36297 0.15523   3 0.08962 0.4277 0.26154, 0.54167 -0.19
CC026/GeniUncJ f 0.125 0.0   1   0.0 0.0 0.125, 0.125 -0.92
CC026/GeniUncJ m 0.63043 0.0   1   0.0 0.0 0.63043, 0.63043 -0.07
CC027/GeniUncJ f 0.18351 0.00238295   2   0.001685 0.013 0.18182, 0.18519 -0.78
CC027/GeniUncJ m 0.59625 0.46084   4 0.23042 0.7729 0.20312, 1.187 -0.09
CC028/GeniUncJ f 0.67571 0.31001   3 0.17899 0.4588 0.33007, 0.9292 0.43
CC028/GeniUncJ m 0.52932 0.43763   3 0.25267 0.8268 0.16216, 1.0136 -0.12
CC029/UncJ f 0.20238 0.0   1   0.0 0.0 0.20238, 0.20238 -0.73
CC029/UncJ m 0.5 0.0   1   0.0 0.0 0.5, 0.5 -0.13
CC030/GeniUncJ f 0.29014 0.04721   2   0.03339 0.1627 0.25676, 0.32353 -0.51
CC030/GeniUncJ m 0.14238 0.04822   2   0.03409 0.3387 0.10828, 0.17647 -0.29
CC032/GeniUncJ f 0.31262 0.3007   2   0.21263 0.9618 0.1, 0.52525 -0.46
CC033/GeniUncJ f 0.35481 0.19772   2   0.13981 0.5573 0.215, 0.49462 -0.36
CC033/GeniUncJ m 0.57415 0.45842   2   0.32416 0.7984 0.25, 0.89831 -0.1
CC035/UncJ m 0.23118 0.0   1   0.0 0.0 0.23118, 0.23118 -0.25
CC036/UncJ f 0.58038 0.17954   3 0.10365 0.3093 0.37349, 0.69524 0.2
CC036/UncJ m 0.89027 0.69366   3 0.40048 0.7792 0.46032, 1.6905 0.04
CC037/TauUncJ f 0.43927 0.1045   2   0.07389 0.2379 0.36538, 0.51316 -0.15
CC037/TauUncJ m 0.13163 0.12115   3 0.06994 0.9203 0.05, 0.27083 -0.3
CC040/TauUncJ f 0.1501 0.02749   3 0.01587 0.1831 0.13333, 0.18182 -0.86
CC040/TauUncJ m 0.31531 0.26914   2   0.19031 0.8536 0.125, 0.50562 -0.22
CC041/TauUncJ f 0.46222 0.33898   3 0.19571 0.7334 0.1, 0.77181 -0.09
CC041/TauUncJ m 0.62477 0.48389   2   0.34217 0.7745 0.28261, 0.96694 -0.08
CC043/GeniUncJ f 0.31854 0.07054   2   0.04988 0.2215 0.26866, 0.36842 -0.44
CC043/GeniUncJ m 0.52792 0.0   1   0.0 0.0 0.52792, 0.52792 -0.12
CC051/TauUncJ f 0.4 0.0   1   0.0 0.0 0.4, 0.4 -0.24
CC051/TauUncJ m 1.2128 0.0   1   0.0 0.0 1.2128, 1.2128 0.19
CC057/UncJ f 0.51429 0.0   1   0.0 0.0 0.51429, 0.51429 0.04
CC057/UncJ m 0.44673 0.05622   2   0.03976 0.1259 0.40698, 0.48649 -0.16
CC059/TauUncJ f 1.8384 1.1254   4 0.56268 0.6121 0.63291, 3.0645 3.29
CC059/TauUncJ m 0.83771 0.35626   5 0.15933 0.4253 0.5035, 1.3279 0.02
CC060/UncJ f 0.025 0.0   1   0.0 0.0 0.025, 0.025 -1.17
CC060/UncJ m 0.32558 0.0   1   0.0 0.0 0.32558, 0.32558 -0.21
CC061/GeniUncJ f 1.2362 1.0294   3 0.59435 0.8328 0.36585, 2.3725 1.81
CC061/GeniUncJ m 0.61996 0.05601   2   0.03961 0.0903 0.58036, 0.65957 -0.08
CC074/UncJ f 0.44681 0.0   1   0.0 0.0 0.44681, 0.44681 -0.13
CC074/UncJ m 0.5102 0.0   1   0.0 0.0 0.5102, 0.5102 -0.13
CC075/UncJ f 0.12682 0.05636   2   0.03986 0.4445 0.08696, 0.16667 -0.92
CC075/UncJ m 0.08 0.0   1   0.0 0.0 0.08, 0.08 -0.32
CC078/TauUncJ f 0.2407 0.23026   3 0.13294 0.9566 0.09524, 0.50617 -0.64
CC078/TauUncJ m 0.22146 0.15003   3 0.08662 0.6775 0.05, 0.32867 -0.26
CC079/TauUncJ f 0.27778 0.0   1   0.0 0.0 0.27778, 0.27778 -0.54
CC079/TauUncJ m 0.21669 0.01679   2   0.01187 0.0775 0.20482, 0.22857 -0.26
CC080/TauUncJ f 0.39832 0.26678   2   0.18864 0.6698 0.20968, 0.58696 -0.25
CC084/TauJ f 0.4809 0.32653   2   0.23089 0.679 0.25, 0.71179 -0.05
CC084/TauJ m 0.18182 0.12857   2   0.09091 0.7071 0.09091, 0.27273 -0.28
NOD/ShiLtJ f 0.82857 0.99338   7 0.37546 1.1989 0.04651, 2.9 0.81
NOD/ShiLtJ m 0.43815 0.37372   10 0.11818 0.8529 0.05, 1.1216 -0.16
NZO/HlLtJ f 0.50051 0.62053   3 0.35826 1.2398 0.05, 1.2083 0.0
NZO/HlLtJ m 0.41057 0.03424   2   0.02421 0.0834 0.38636, 0.43478 -0.17
PWK/PhJ f 0.3707 0.42188   8 0.14916 1.1381 0.03571, 1.3366 -0.32
PWK/PhJ m 15.669 40.495   7 15.306 2.5844 0.11765, 107.5 6.68
WSB/EiJ f 0.62342 0.65528   8 0.23168 1.0511 0.07576, 2.1438 0.31
WSB/EiJ m 0.46934 0.63367   6 0.2587 1.3501 0.05, 1.7313 -0.15


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 0.35303 4.376056349 8.9907183182 -8.2846583182
129S1/SvImJ m 0.663085 5.3595525703 11.2420494684 -9.9158794684
A/J f 1.3457166667 3.0943391192 7.4534846503 -4.7620513169
A/J m 1.05361 3.3896786723 7.7443346012 -5.6371146012
C57BL/6J f 0.4386092857 2.0257204628 4.437082016 -3.5598634446
C57BL/6J m 0.149746 2.3968647752 4.8808027366 -4.5813107366
CAST/EiJ f 0.407963 2.3968647752 5.1390197366 -4.3230937366
CAST/EiJ m 0.4964928571 2.8648013521 6.1511872211 -5.1582015068
CC001/UncJ f 0.30644 4.376056349 8.9441283182 -8.3312483182
CC001/UncJ m 0.45728 5.3595525703 11.0362444684 -10.1216844684
CC002/UncJ f 0.1512866667 4.376056349 8.7889749849 -8.4864016516
CC002/UncJ m 0.2566225 3.7897759666 7.7370800136 -7.2238350136
CC003/UncJ f 0.330725 5.3595525703 10.9096894684 -10.2482394684
CC003/UncJ m 0.29348 4.376056349 8.9311683182 -8.3442083182
CC005/TauUncJ f 0.5440733333 4.376056349 9.1817616516 -8.0936149849
CC005/TauUncJ m 0.176925 5.3595525703 10.7558894684 -10.4020394684
CC011/UncJ f 1.7117733333 4.376056349 10.3494616516 -6.9259149849
CC011/UncJ m 0.59091 5.3595525703 11.1698744684 -9.9880544684
CC013/GeniUncJ f 1.713845 5.3595525703 12.2928094684 -8.8651194684
CC013/GeniUncJ m 2.53845 5.3595525703 13.1174144684 -8.0405144684
CC016/GeniUncJ f 0.2767233333 4.376056349 8.9144116516 -8.3609649849
CC016/GeniUncJ m 0.45154 3.7897759666 7.9319975136 -7.0289175136
CC017/UncJ f 0.11848 5.3595525703 10.6974444684 -10.4604844684
CC017/UncJ m 0.2490333333 4.376056349 8.8867216516 -8.3886549849
CC018/UncJ f 0.46848 5.3595525703 11.0474444684 -10.1104844684
CC018/UncJ m 0.13269 5.3595525703 10.7116544684 -10.4462744684
CC019/TauUncJ f 0.306115 3.7897759666 7.7865725136 -7.1743425136
CC019/TauUncJ m 0.3292775 3.7897759666 7.8097350136 -7.1511800136
CC025/GeniUncJ f 0.8647766667 4.376056349 9.5024649849 -7.7729116516
CC025/GeniUncJ m 0.3629733333 4.376056349 9.0006616516 -8.2747149849
CC027/GeniUncJ f 0.183505 5.3595525703 10.7624694684 -10.3954594684
CC027/GeniUncJ m 0.59625 3.7897759666 8.0767075136 -6.8842075136
CC028/GeniUncJ f 0.67571 4.376056349 9.3133983182 -7.9619783182
CC028/GeniUncJ m 0.5293233333 4.376056349 9.1670116516 -8.1083649849
CC030/GeniUncJ f 0.290145 5.3595525703 10.8691094684 -10.2888194684
CC030/GeniUncJ m 0.142375 5.3595525703 10.7213394684 -10.4365894684
CC033/GeniUncJ f 0.35481 5.3595525703 10.9337744684 -10.2241544684
CC033/GeniUncJ m 0.574155 5.3595525703 11.1531194684 -10.0048094684
CC036/UncJ f 0.58038 4.376056349 9.2180683182 -8.0573083182
CC036/UncJ m 0.8902733333 4.376056349 9.5279616516 -7.7474149849
CC037/TauUncJ f 0.43927 5.3595525703 11.0182344684 -10.1396944684
CC037/TauUncJ m 0.1316333333 4.376056349 8.7693216516 -8.5060549849
CC040/TauUncJ f 0.1500966667 4.376056349 8.7877849849 -8.4875916516
CC040/TauUncJ m 0.31531 5.3595525703 10.8942744684 -10.2636544684
CC041/TauUncJ f 0.46222 4.376056349 9.0999083182 -8.1754683182
CC041/TauUncJ m 0.624775 5.3595525703 11.2037394684 -9.9541894684
CC059/TauUncJ f 1.8384275 3.7897759666 9.3188850136 -5.6420300136
CC059/TauUncJ m 0.837708 3.3896786723 7.5284326012 -5.8530166012
CC061/GeniUncJ f 1.2361533333 4.376056349 9.8738416516 -7.4015349849
CC061/GeniUncJ m 0.619965 5.3595525703 11.1989294684 -9.9589994684
CC078/TauUncJ f 0.2407 4.376056349 8.8783883182 -8.3969883182
CC078/TauUncJ m 0.22146 4.376056349 8.8591483182 -8.4162283182
CC084/TauJ f 0.480895 5.3595525703 11.0598594684 -10.0980694684
CC084/TauJ m 0.18182 5.3595525703 10.7607844684 -10.3971444684
NOD/ShiLtJ f 0.8285714286 2.8648013521 6.4832657925 -4.8261229354
NOD/ShiLtJ m 0.438147 2.3968647752 5.1692037366 -4.2929097366
NZO/HlLtJ f 0.5005133333 4.376056349 9.1382016516 -8.1371749849
NZO/HlLtJ m 0.41057 5.3595525703 10.9895344684 -10.1683944684
PWK/PhJ f 0.37069625 2.6797762852 5.6601784842 -4.9187859842
PWK/PhJ m 15.6687885714 2.8648013521 21.3234829354 10.0140942075
WSB/EiJ f 0.62342375 2.6797762852 5.9129059842 -4.6660584842
WSB/EiJ m 0.469345 3.0943391192 6.5771129836 -5.6384229836


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 0.5080575 3.459576308 7.3367497011 -6.3206347011
A/J both 1.1996633333 2.2948233094 5.7293053013 -3.3299786346
C57BL/6J both 0.2941776429 1.5691163233 3.3913813018 -2.8030260161
CAST/EiJ both 0.4522279286 1.8676219865 4.1386376384 -3.2341817813
CC001/UncJ both 0.38186 3.459576308 7.2105522011 -6.4468322011
CC002/UncJ both 0.2039545833 2.8944892056 5.9172483815 -5.5093392148
CC003/UncJ both 0.3121025 3.459576308 7.1407947011 -6.5165897011
CC005/TauUncJ both 0.3604991667 3.459576308 7.1891913677 -6.4681930344
CC011/UncJ both 1.1513416667 3.459576308 7.9800338677 -5.6773505344
CC013/GeniUncJ both 2.1261475 3.7897759666 9.6066050136 -5.3543100136
CC016/GeniUncJ both 0.3641316667 2.8944892056 6.0774254648 -5.3491621315
CC017/UncJ both 0.1837566667 3.459576308 7.0124488677 -6.6449355344
CC018/UncJ both 0.300585 3.7897759666 7.7810425136 -7.1798725136
CC019/TauUncJ both 0.31769625 2.6797762852 5.6071784842 -4.9717859842
CC025/GeniUncJ both 0.613875 3.0943391192 6.7216429836 -5.4938929836
CC027/GeniUncJ both 0.3898775 3.2820422617 6.8681437387 -6.0883887387
CC028/GeniUncJ both 0.6025166667 3.0943391192 6.7102846503 -5.5052513169
CC030/GeniUncJ both 0.21626 3.7897759666 7.6967175136 -7.2641975136
CC033/GeniUncJ both 0.4644825 3.7897759666 7.9449400136 -7.0159750136
CC036/UncJ both 0.7353266667 3.0943391192 6.8430946503 -5.3724413169
CC037/TauUncJ both 0.2854516667 3.459576308 7.1141438677 -6.5432405344
CC040/TauUncJ both 0.2327033333 3.459576308 7.0613955344 -6.5959888677
CC041/TauUncJ both 0.5434975 3.459576308 7.3721897011 -6.2851947011
CC059/TauUncJ both 1.33806775 2.5422590042 6.3561112009 -3.6799757009
CC061/GeniUncJ both 0.9280591667 3.459576308 7.7567513677 -5.9006330344
CC078/TauUncJ both 0.23108 3.0943391192 6.3388479836 -5.8766879836
CC084/TauJ both 0.3313575 3.7897759666 7.8118150136 -7.1491000136
NOD/ShiLtJ both 0.6333592143 1.8676219865 4.3197689241 -3.0530504955
NZO/HlLtJ both 0.4555416667 3.459576308 7.2842338677 -6.3731505344
PWK/PhJ both 8.0197424107 1.9613954041 11.8912469844 4.148237837
WSB/EiJ both 0.546384375 2.0467129454 4.5862931626 -3.4935244126




GWAS analysis not available: Strain panel must be either Inbred, HMDP, BXD, BXH, CXB, or AXB/BXA