Project measure / variable:   CSNA03   reward_time_cc_rev_JAX

ID, description, units MPD:110508   reward_time_cc_rev_JAX   latency to retrieve reward per total correct responses (reversal learning assay), CC   [centiseconds/n]  reversal  
Data set, strains CSNA03   CC w/par   52 strains     sex: both     age:
Procedure operant conditioning chamber
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  STRAIN COMPARISON PLOT
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CSNA03 - latency to retrieve reward per total correct responses (reversal learning assay), CC reversal



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested51 strains49 strains
Mean of the strain means208.6   centiseconds/n 219.6   centiseconds/n
Median of the strain means210.0   centiseconds/n 215.1   centiseconds/n
SD of the strain means± 61.68 ± 75.52
Coefficient of variation (CV)0.2957 0.3439
Min–max range of strain means95.22   –   397.6   centiseconds/n 120.8   –   602.5   centiseconds/n
Mean sample size per strain3.0   mice 3.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 3114.2475 3114.2475 1.0379 0.3096
strain 34 534165.0721 15710.7374 5.2359 < 0.0001
sex:strain 34 142119.458 4179.9841 1.3931 0.086
Residuals 192 576108.0552 3000.5628


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page:
Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 144.8 28.215   3 16.29 0.1949 113.7, 168.8 -1.03
129S1/SvImJ m 165.7 51.69   4 25.846 0.312 128.8, 242.2 -0.71
A/J f 252.9 24.859   6 10.149 0.0983 223.2, 279.4 0.72
A/J m 230.7 42.68   5 19.087 0.185 171.5, 275.6 0.15
C57BL/6J f 252.0 45.023   14 12.033 0.1787 164.7, 316.6 0.7
C57BL/6J m 258.5 47.543   11 14.335 0.1839 174.7, 342.9 0.51
CAST/EiJ f 232.1 46.756   10 14.785 0.2014 147.2, 317.2 0.38
CAST/EiJ m 320.9 55.09   8 19.476 0.1717 247.5, 396.1 1.34
CC001/UncJ f 240.5 72.76   3 42.007 0.3025 160.4, 302.5 0.52
CC001/UncJ m 153.3 54.24   2   38.35 0.3537 115.0, 191.7 -0.88
CC002/UncJ f 197.2 69.96   4 34.981 0.3547 143.4, 293.2 -0.18
CC002/UncJ m 176.7 75.71   4 37.856 0.4284 124.9, 287.6 -0.57
CC003/UncJ f 197.5 23.193   2   16.4 0.1174 181.1, 213.9 -0.18
CC003/UncJ m 210.6 55.34   3 31.948 0.2627 172.5, 274.1 -0.12
CC004/TauUncJ f 177.4 0.0   1   0.0 0.0 177.4, 177.4 -0.51
CC004/TauUncJ m 140.3 42.78   2   30.25 0.3048 110.1, 170.6 -1.05
CC005/TauUncJ f 213.8 15.213   3 8.7831 0.0712 196.9, 226.4 0.08
CC005/TauUncJ m 175.8 74.88   2   52.95 0.4261 122.8, 228.7 -0.58
CC006/TauUncJ f 125.9 7.9196   2   5.6 0.0629 120.3, 131.5 -1.34
CC006/TauUncJ m 140.2 11.667   2   8.25 0.0832 132.0, 148.5 -1.05
CC007/UncJ f 141.7 0.0   1   0.0 0.0 141.7, 141.7 -1.08
CC008/GeniUncJ f 184.6 0.0   1   0.0 0.0 184.6, 184.6 -0.39
CC008/GeniUncJ m 310.6 0.0   1   0.0 0.0 310.6, 310.6 1.2
CC009/UncJ f 136.4 19.94   2   14.1 0.1462 122.3, 150.5 -1.17
CC009/UncJ m 120.8 53.95   2   38.145 0.4467 82.61, 158.9 -1.31
CC011/UncJ f 219.3 51.94   3 29.987 0.2368 169.2, 272.9 0.17
CC011/UncJ m 234.7 80.8   3 46.649 0.3442 146.3, 304.7 0.2
CC012/GeniUncJ f 397.6 98.23   3 56.71 0.2471 301.7, 498.0 3.06
CC012/GeniUncJ m 602.5 0.0   1   0.0 0.0 602.5, 602.5 5.07
CC013/GeniUncJ f 185.1 12.799   2   9.05 0.0691 176.1, 194.2 -0.38
CC013/GeniUncJ m 158.6 35.497   2   25.1 0.2238 133.5, 183.7 -0.81
CC015/UncJ f 236.1 0.0   1   0.0 0.0 236.1, 236.1 0.45
CC015/UncJ m 313.7 0.0   1   0.0 0.0 313.7, 313.7 1.25
CC016/GeniUncJ f 270.2 53.32   3 30.784 0.1974 210.1, 311.9 1.0
CC016/GeniUncJ m 260.2 28.99   4 14.495 0.1114 234.5, 296.7 0.54
CC017/UncJ f 105.8 3.9598   2   2.8 0.0374 103.0, 108.6 -1.67
CC017/UncJ m 130.7 44.695   3 25.805 0.3419 90.62, 178.9 -1.18
CC018/UncJ f 181.8 26.66   3 15.392 0.1466 154.2, 207.4 -0.43
CC018/UncJ m 215.1 61.45   2   43.45 0.2857 171.6, 258.5 -0.06
CC019/TauUncJ f 219.8 70.61   4 35.305 0.3213 116.0, 271.8 0.18
CC019/TauUncJ m 231.6 79.8   4 39.899 0.3445 128.4, 302.9 0.16
CC023/GeniUncJ f 267.9 58.76   2   41.55 0.2194 226.3, 309.4 0.96
CC023/GeniUncJ m 210.2 0.0   1   0.0 0.0 210.2, 210.2 -0.12
CC025/GeniUncJ f 271.5 111.5   3 64.35 0.4105 151.5, 371.8 1.02
CC025/GeniUncJ m 210.3 56.77   3 32.774 0.2699 144.8, 244.3 -0.12
CC026/GeniUncJ f 235.2 0.0   1   0.0 0.0 235.2, 235.2 0.43
CC026/GeniUncJ m 225.1 68.24   2   48.25 0.3032 176.8, 273.3 0.07
CC027/GeniUncJ f 191.8 15.061   2   10.65 0.0785 181.1, 202.4 -0.27
CC027/GeniUncJ m 232.6 59.35   4 29.675 0.2551 178.3, 317.1 0.17
CC028/GeniUncJ f 268.0 44.052   3 25.433 0.1644 234.6, 317.9 0.96
CC028/GeniUncJ m 232.4 49.04   3 28.313 0.211 178.6, 274.6 0.17
CC029/UncJ f 192.1 0.0   1   0.0 0.0 192.1, 192.1 -0.27
CC029/UncJ m 157.2 0.0   1   0.0 0.0 157.2, 157.2 -0.83
CC030/GeniUncJ f 212.3 44.123   2   31.2 0.2078 181.1, 243.5 0.06
CC030/GeniUncJ m 215.2 55.15   2   39.0 0.2563 176.2, 254.2 -0.06
CC032/GeniUncJ f 221.8 140.0   2   99.0 0.6312 122.8, 320.8 0.21
CC033/GeniUncJ f 195.8 108.8   2   76.95 0.5559 118.8, 272.7 -0.21
CC033/GeniUncJ m 153.2 10.112   2   7.15 0.066 146.1, 160.4 -0.88
CC035/UncJ m 200.4 0.0   1   0.0 0.0 200.4, 200.4 -0.25
CC036/UncJ f 185.7 45.702   3 26.386 0.2461 144.4, 234.8 -0.37
CC036/UncJ m 211.3 25.914   3 14.961 0.1226 184.4, 236.1 -0.11
CC037/TauUncJ f 230.9 2.8991   2   2.05 0.0126 228.9, 233.0 0.36
CC037/TauUncJ m 205.9 39.695   3 22.918 0.1928 164.1, 243.1 -0.18
CC040/TauUncJ f 104.6 7.1002   3 4.0993 0.0679 97.5, 111.7 -1.69
CC040/TauUncJ m 254.2 128.5   3 74.22 0.5056 132.7, 388.8 0.46
CC041/TauUncJ f 386.7 93.99   3 54.26 0.243 290.5, 478.3 2.89
CC041/TauUncJ m 233.2 20.86   2   14.75 0.0895 218.4, 247.9 0.18
CC043/GeniUncJ f 178.4 90.09   2   63.7 0.505 114.7, 242.1 -0.49
CC043/GeniUncJ m 228.3 24.254   2   17.15 0.1062 211.2, 245.5 0.11
CC044/UncJ f 95.22 0.0   1   0.0 0.0 95.22, 95.22 -1.84
CC051/TauUncJ f 320.2 0.0   1   0.0 0.0 320.2, 320.2 1.81
CC051/TauUncJ m 252.8 0.0   1   0.0 0.0 252.8, 252.8 0.44
CC057/UncJ f 230.6 39.598   2   28.0 0.1717 202.6, 258.6 0.36
CC057/UncJ m 248.8 125.4   2   88.7 0.5042 160.1, 337.5 0.39
CC059/TauUncJ f 265.9 113.3   4 56.63 0.426 164.5, 374.1 0.93
CC059/TauUncJ m 268.7 35.78   5 16.001 0.1331 222.5, 314.2 0.65
CC060/UncJ f 225.0 0.0   1   0.0 0.0 225.0, 225.0 0.27
CC060/UncJ m 149.3 0.0   1   0.0 0.0 149.3, 149.3 -0.93
CC061/GeniUncJ f 187.9 27.062   3 15.624 0.144 156.7, 204.4 -0.34
CC061/GeniUncJ m 225.1 71.98   2   50.9 0.3198 174.2, 276.0 0.07
CC074/UncJ f 146.3 0.0   1   0.0 0.0 146.3, 146.3 -1.01
CC074/UncJ m 148.4 0.0   1   0.0 0.0 148.4, 148.4 -0.94
CC075/UncJ f 186.7 41.295   2   29.2 0.2212 157.5, 215.9 -0.35
CC075/UncJ m 247.8 0.0   1   0.0 0.0 247.8, 247.8 0.37
CC078/TauUncJ f 181.4 24.603   3 14.205 0.1357 165.4, 209.7 -0.44
CC078/TauUncJ m 265.3 37.931   3 21.899 0.143 224.1, 298.8 0.6
CC079/TauUncJ f 210.0 0.0   1   0.0 0.0 210.0, 210.0 0.02
CC079/TauUncJ m 189.3 7.566   2   5.35 0.04 184.0, 194.7 -0.4
CC080/TauUncJ f 140.9 28.143   2   19.9 0.1997 121.0, 160.8 -1.1
CC080/TauUncJ m 171.5 0.0   1   0.0 0.0 171.5, 171.5 -0.64
CC084/TauJ f 259.4 52.18   2   36.9 0.2012 222.5, 296.3 0.82
CC084/TauJ m 300.9 67.67   2   47.85 0.2249 253.1, 348.8 1.08
NOD/ShiLtJ f 140.8 49.11   8 17.363 0.3487 78.72, 248.9 -1.1
NOD/ShiLtJ m 161.1 27.301   11 8.2316 0.1695 116.9, 197.8 -0.77
NZO/HlLtJ f 137.0 17.722   3 10.232 0.1294 125.4, 157.4 -1.16
NZO/HlLtJ m 134.9 11.243   2   7.95 0.0834 126.9, 142.8 -1.12
PWK/PhJ f 242.4 51.19   9 17.064 0.2112 179.0, 324.3 0.55
PWK/PhJ m 266.7 67.04   8 23.703 0.2513 204.0, 365.8 0.62
WSB/EiJ f 212.7 38.652   8 13.666 0.1817 174.6, 287.8 0.07
WSB/EiJ m 210.4 77.44   6 31.614 0.368 99.33, 310.1 -0.12


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 144.7666666667 31.625742612 207.1451704298 82.3881629036
129S1/SvImJ m 165.7 27.3886965155 219.7213689089 111.6786310911
A/J f 252.8833333333 22.362777061 296.9915963445 208.7750703222
A/J m 230.68 24.4971948895 278.9981812472 182.3618187528
C57BL/6J f 252.0071428571 14.6398740902 280.8827791459 223.1315065683
C57BL/6J m 258.5181818182 16.5160054252 291.0942929695 225.9420706669
CAST/EiJ f 232.13 17.3221326264 266.2961136145 197.9638863855
CAST/EiJ m 320.8625 19.366733034 359.0613762845 282.6636237155
CC001/UncJ f 240.5 31.625742612 302.8785037631 178.1214962369
CC001/UncJ m 153.35 38.733466068 229.7477525689 76.9522474311
CC002/UncJ f 197.225 27.3886965155 251.2463689089 143.2036310911
CC002/UncJ m 176.725 27.3886965155 230.7463689089 122.7036310911
CC003/UncJ f 197.5 38.733466068 273.8977525689 121.1022474311
CC003/UncJ m 210.6333333333 31.625742612 273.0118370964 148.2548295702
CC005/TauUncJ f 213.8 31.625742612 276.1785037631 151.4214962369
CC005/TauUncJ m 175.75 38.733466068 252.1477525689 99.3522474311
CC006/TauUncJ f 125.9 38.733466068 202.2977525689 49.5022474311
CC006/TauUncJ m 140.25 38.733466068 216.6477525689 63.8522474311
CC009/UncJ f 136.4 38.733466068 212.7977525689 60.0022474311
CC009/UncJ m 120.755 38.733466068 197.1527525689 44.3572474311
CC011/UncJ f 219.3 31.625742612 281.6785037631 156.9214962369
CC011/UncJ m 234.7333333333 31.625742612 297.1118370964 172.3548295702
CC013/GeniUncJ f 185.15 38.733466068 261.5477525689 108.7522474311
CC013/GeniUncJ m 158.6 38.733466068 234.9977525689 82.2022474311
CC016/GeniUncJ f 270.1666666667 31.625742612 332.5451704298 207.7881629036
CC016/GeniUncJ m 260.225 27.3886965155 314.2463689089 206.2036310911
CC017/UncJ f 105.8 38.733466068 182.1977525689 29.4022474311
CC017/UncJ m 130.7066666667 31.625742612 193.0851704298 68.3281629036
CC018/UncJ f 181.8333333333 31.625742612 244.2118370964 119.4548295702
CC018/UncJ m 215.05 38.733466068 291.4477525689 138.6522474311
CC019/TauUncJ f 219.775 27.3886965155 273.7963689089 165.7536310911
CC019/TauUncJ m 231.625 27.3886965155 285.6463689089 177.6036310911
CC025/GeniUncJ f 271.5 31.625742612 333.8785037631 209.1214962369
CC025/GeniUncJ m 210.3333333333 31.625742612 272.7118370964 147.9548295702
CC027/GeniUncJ f 191.75 38.733466068 268.1477525689 115.3522474311
CC027/GeniUncJ m 232.625 27.3886965155 286.6463689089 178.6036310911
CC028/GeniUncJ f 267.9666666667 31.625742612 330.3451704298 205.5881629036
CC028/GeniUncJ m 232.4 31.625742612 294.7785037631 170.0214962369
CC030/GeniUncJ f 212.3 38.733466068 288.6977525689 135.9022474311
CC030/GeniUncJ m 215.2 38.733466068 291.5977525689 138.8022474311
CC033/GeniUncJ f 195.75 38.733466068 272.1477525689 119.3522474311
CC033/GeniUncJ m 153.25 38.733466068 229.6477525689 76.8522474311
CC036/UncJ f 185.7 31.625742612 248.0785037631 123.3214962369
CC036/UncJ m 211.3 31.625742612 273.6785037631 148.9214962369
CC037/TauUncJ f 230.95 38.733466068 307.3477525689 154.5522474311
CC037/TauUncJ m 205.8666666667 31.625742612 268.2451704298 143.4881629036
CC040/TauUncJ f 104.6333333333 31.625742612 167.0118370964 42.2548295702
CC040/TauUncJ m 254.2333333333 31.625742612 316.6118370964 191.8548295702
CC041/TauUncJ f 386.7333333333 31.625742612 449.1118370964 324.3548295702
CC041/TauUncJ m 233.15 38.733466068 309.5477525689 156.7522474311
CC043/GeniUncJ f 178.4 38.733466068 254.7977525689 102.0022474311
CC043/GeniUncJ m 228.35 38.733466068 304.7477525689 151.9522474311
CC057/UncJ f 230.6 38.733466068 306.9977525689 154.2022474311
CC057/UncJ m 248.8 38.733466068 325.1977525689 172.4022474311
CC059/TauUncJ f 265.875 27.3886965155 319.8963689089 211.8536310911
CC059/TauUncJ m 268.72 24.4971948895 317.0381812472 220.4018187528
CC061/GeniUncJ f 187.9333333333 31.625742612 250.3118370964 125.5548295702
CC061/GeniUncJ m 225.1 38.733466068 301.4977525689 148.7022474311
CC078/TauUncJ f 181.3666666667 31.625742612 243.7451704298 118.9881629036
CC078/TauUncJ m 265.2666666667 31.625742612 327.6451704298 202.8881629036
CC084/TauJ f 259.4 38.733466068 335.7977525689 183.0022474311
CC084/TauJ m 300.95 38.733466068 377.3477525689 224.5522474311
NOD/ShiLtJ f 140.84 19.366733034 179.0388762845 102.6411237155
NOD/ShiLtJ m 161.0909090909 16.5160054252 193.6670202422 128.5147979396
NZO/HlLtJ f 137.0 31.625742612 199.3785037631 74.6214962369
NZO/HlLtJ m 134.85 38.733466068 211.2477525689 58.4522474311
PWK/PhJ f 242.3666666667 18.2591310103 278.3809126059 206.3524207274
PWK/PhJ m 266.7375 19.366733034 304.9363762845 228.5386237155
WSB/EiJ f 212.6875 19.366733034 250.8863762845 174.4886237155
WSB/EiJ m 210.4383333333 22.362777061 254.5465963445 166.3300703222


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 155.2333333333 20.9184624948 196.4928353617 113.973831305
A/J both 241.7816666667 16.5846793407 274.4932300078 209.0701033255
C57BL/6J both 255.2626623377 11.0352203035 277.0284921451 233.4968325302
CAST/EiJ both 276.49625 12.9915994698 302.1208352109 250.8716647891
CC001/UncJ both 196.925 25.002344837 246.2395372312 147.6104627688
CC002/UncJ both 186.975 19.366733034 225.1738762845 148.7761237155
CC003/UncJ both 204.0666666667 25.002344837 253.3812038979 154.7521294355
CC005/TauUncJ both 194.775 25.002344837 244.0895372312 145.4604627688
CC006/TauUncJ both 133.075 27.3886965155 187.0963689089 79.0536310911
CC009/UncJ both 128.5775 27.3886965155 182.5988689089 74.5561310911
CC011/UncJ both 227.0166666667 22.362777061 271.1249296778 182.9084036555
CC013/GeniUncJ both 171.875 27.3886965155 225.8963689089 117.8536310911
CC016/GeniUncJ both 265.1958333333 20.9184624948 306.4553353617 223.936331305
CC017/UncJ both 118.2533333333 25.002344837 167.5678705645 68.9387961021
CC018/UncJ both 198.4416666667 25.002344837 247.7562038979 149.1271294355
CC019/TauUncJ both 225.7 19.366733034 263.8988762845 187.5011237155
CC025/GeniUncJ both 240.9166666667 22.362777061 285.0249296778 196.8084036555
CC027/GeniUncJ both 212.1875 23.719306959 258.9713778223 165.4036221777
CC028/GeniUncJ both 250.1833333333 22.362777061 294.2915963445 206.0750703222
CC030/GeniUncJ both 213.75 27.3886965155 267.7713689089 159.7286310911
CC033/GeniUncJ both 174.5 27.3886965155 228.5213689089 120.4786310911
CC036/UncJ both 198.5 22.362777061 242.6082630112 154.3917369888
CC037/TauUncJ both 218.4083333333 25.002344837 267.7228705645 169.0937961021
CC040/TauUncJ both 179.4333333333 22.362777061 223.5415963445 135.3250703222
CC041/TauUncJ both 309.9416666667 25.002344837 359.2562038979 260.6271294355
CC043/GeniUncJ both 203.375 27.3886965155 257.3963689089 149.3536310911
CC057/UncJ both 239.7 27.3886965155 293.7213689089 185.6786310911
CC059/TauUncJ both 267.2975 18.3728961671 303.5361359354 231.0588640646
CC061/GeniUncJ both 206.5166666667 25.002344837 255.8312038979 157.2021294355
CC078/TauUncJ both 223.3166666667 22.362777061 267.4249296778 179.2084036555
CC084/TauJ both 280.175 27.3886965155 334.1963689089 226.1536310911
NOD/ShiLtJ both 150.9654545455 12.7264368896 176.0670340134 125.8638750775
NZO/HlLtJ both 135.925 25.002344837 185.2395372312 86.6104627688
PWK/PhJ both 254.5520833333 13.3085143204 280.8017502835 228.3024163832
WSB/EiJ both 211.5629166667 14.791586682 240.7377903393 182.388042994




GWAS analysis not available: Strain panel must be either Inbred, HMDP, BXD, BXH, CXB, or AXB/BXA