Project measure / variable:   CSNA03   retrieval_cc_acq_JAX

ID, description, units MPD:110505   retrieval_cc_acq_JAX   retrieval (reversal learning assay), CC    acquisition   informational
Data set, strains CSNA03   CC w/par   52 strains     sex: both     age:
Procedure operant conditioning chamber
Ontology mappings

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  STRAIN COMPARISON PLOT
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CSNA03 - retrieval (reversal learning assay), CC acquisition



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested51 strains49 strains
Mean of the strain means9874.0   None 9619.0   None
Median of the strain means9301.0   None 8500.0   None
SD of the strain means± 5869.0 ± 4965.0
Coefficient of variation (CV)0.5944 0.5161
Min–max range of strain means1600.0   –   26434.0   None 2956.0   –   23865.0   None
Mean sample size per strain3.0   mice 3.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 133725116.4211 133725116.4211 2.276 0.133
strain 34 4859247979.0339 142919058.2069 2.4325 < 0.0001
sex:strain 34 910177564.369 26769928.3638 0.4556 0.996
Residuals 192 11280651566.9546 58753393.5779


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page:
Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 10336.0 11236.0   3 6487.0 1.0871 3653.0, 23308.0 0.08
129S1/SvImJ m 6267.0 5286.0   4 2643.0 0.8434 1714.0, 13871.0 -0.68
A/J f 17004.0 8332.0   6 3401.0 0.49 3058.0, 26880.0 1.22
A/J m 15664.0 5951.0   5 2661.0 0.3799 9044.0, 24990.0 1.22
C57BL/6J f 12198.0 4836.0   14 1292.0 0.3964 2392.0, 18571.0 0.4
C57BL/6J m 11710.0 8241.0   11 2485.0 0.7038 2432.0, 31870.0 0.42
CAST/EiJ f 13199.0 6132.0   10 1939.0 0.4645 3324.0, 23767.0 0.57
CAST/EiJ m 14150.0 8142.0   8 2879.0 0.5754 3665.0, 27541.0 0.91
CC001/UncJ f 9301.0 1759.0   3 1015.0 0.1891 7324.0, 10692.0 -0.1
CC001/UncJ m 7340.0 345.8   2   244.5 0.0471 7096.0, 7585.0 -0.46
CC002/UncJ f 5902.0 3312.0   4 1656.0 0.5611 2789.0, 9074.0 -0.68
CC002/UncJ m 5297.0 3182.0   4 1591.0 0.6007 1562.0, 9319.0 -0.87
CC003/UncJ f 7877.0 7821.0   2   5530.0 0.9928 2347.0, 13407.0 -0.34
CC003/UncJ m 11425.0 4904.0   3 2831.0 0.4292 8254.0, 17073.0 0.36
CC004/TauUncJ f 18810.0 0.0   1   0.0 0.0 18810.0, 18810.0 1.52
CC004/TauUncJ m 10162.0 11500.0   2   8132.0 1.1316 2031.0, 18294.0 0.11
CC005/TauUncJ f 9772.0 6348.0   3 3665.0 0.6496 3625.0, 16303.0 -0.02
CC005/TauUncJ m 3105.0 933.4   2   660.0 0.3006 2445.0, 3765.0 -1.31
CC006/TauUncJ f 6421.0 5602.0   2   3961.0 0.8724 2460.0, 10382.0 -0.59
CC006/TauUncJ m 6060.0 6780.0   2   4794.0 1.1188 1266.0, 10854.0 -0.72
CC007/UncJ f 1600.0 0.0   1   0.0 0.0 1600.0, 1600.0 -1.41
CC008/GeniUncJ f 4362.0 0.0   1   0.0 0.0 4362.0, 4362.0 -0.94
CC008/GeniUncJ m 12720.0 0.0   1   0.0 0.0 12720.0, 12720.0 0.62
CC009/UncJ f 5751.0 4572.0   2   3233.0 0.795 2518.0, 8984.0 -0.7
CC009/UncJ m 3480.0 1997.0   2   1412.0 0.5738 2068.0, 4892.0 -1.24
CC011/UncJ f 10096.0 4522.0   3 2611.0 0.4479 4935.0, 13365.0 0.04
CC011/UncJ m 4871.0 3953.0   3 2282.0 0.8116 1971.0, 9374.0 -0.96
CC012/GeniUncJ f 10467.0 4387.0   3 2533.0 0.4191 5948.0, 14708.0 0.1
CC012/GeniUncJ m 22316.0 0.0   1   0.0 0.0 22316.0, 22316.0 2.56
CC013/GeniUncJ f 9426.0 1273.0   2   900.0 0.135 8526.0, 10326.0 -0.08
CC013/GeniUncJ m 8346.0 3710.0   2   2623.0 0.4446 5722.0, 10969.0 -0.26
CC015/UncJ f 14763.0 0.0   1   0.0 0.0 14763.0, 14763.0 0.83
CC015/UncJ m 10837.0 0.0   1   0.0 0.0 10837.0, 10837.0 0.25
CC016/GeniUncJ f 11194.0 4236.0   3 2446.0 0.3784 7726.0, 15915.0 0.22
CC016/GeniUncJ m 5606.0 2386.0   4 1193.0 0.4257 3359.0, 8935.0 -0.81
CC017/UncJ f 3127.0 1018.0   2   720.0 0.3256 2407.0, 3847.0 -1.15
CC017/UncJ m 3471.0 1253.0   3 723.7 0.3611 2199.0, 4705.0 -1.24
CC018/UncJ f 6784.0 2600.0   3 1501.0 0.3832 4594.0, 9657.0 -0.53
CC018/UncJ m 5430.0 3746.0   2   2648.0 0.6899 2781.0, 8078.0 -0.84
CC019/TauUncJ f 9814.0 6444.0   4 3222.0 0.6566 2088.0, 16956.0 -0.01
CC019/TauUncJ m 8500.0 7068.0   4 3534.0 0.8315 2358.0, 17981.0 -0.23
CC023/GeniUncJ f 9888.0 10973.0   2   7759.0 1.1097 2129.0, 17647.0 0.0
CC023/GeniUncJ m 23865.0 0.0   1   0.0 0.0 23865.0, 23865.0 2.87
CC025/GeniUncJ f 12720.0 8582.0   3 4955.0 0.6747 4396.0, 21539.0 0.49
CC025/GeniUncJ m 8582.0 6027.0   3 3480.0 0.7023 3546.0, 15260.0 -0.21
CC026/GeniUncJ f 6876.0 0.0   1   0.0 0.0 6876.0, 6876.0 -0.51
CC026/GeniUncJ m 8444.0 8789.0   2   6214.0 1.0408 2230.0, 14659.0 -0.24
CC027/GeniUncJ f 6846.0 3805.0   2   2690.0 0.5557 4156.0, 9537.0 -0.52
CC027/GeniUncJ m 9243.0 2643.0   4 1322.0 0.286 6075.0, 12037.0 -0.08
CC028/GeniUncJ f 19538.0 14974.0   3 8645.0 0.7664 9885.0, 36788.0 1.65
CC028/GeniUncJ m 16121.0 11218.0   3 6477.0 0.6959 4265.0, 26568.0 1.31
CC029/UncJ f 11484.0 0.0   1   0.0 0.0 11484.0, 11484.0 0.27
CC029/UncJ m 13571.0 0.0   1   0.0 0.0 13571.0, 13571.0 0.8
CC030/GeniUncJ f 6044.0 1427.0   2   1009.0 0.2361 5035.0, 7053.0 -0.65
CC030/GeniUncJ m 10060.0 8554.0   2   6048.0 0.8503 4011.0, 16108.0 0.09
CC032/GeniUncJ f 10762.0 10683.0   2   7554.0 0.9927 3208.0, 18316.0 0.15
CC033/GeniUncJ f 19705.0 8557.0   2   6051.0 0.4343 13654.0, 25756.0 1.68
CC033/GeniUncJ m 7224.0 3194.0   2   2258.0 0.4421 4966.0, 9483.0 -0.48
CC035/UncJ m 19933.0 0.0   1   0.0 0.0 19933.0, 19933.0 2.08
CC036/UncJ f 7123.0 2271.0   3 1311.0 0.3189 5395.0, 9696.0 -0.47
CC036/UncJ m 5934.0 2130.0   3 1230.0 0.359 3773.0, 8032.0 -0.74
CC037/TauUncJ f 9970.0 2278.0   2   1610.0 0.2285 8359.0, 11580.0 0.02
CC037/TauUncJ m 7818.0 7251.0   3 4186.0 0.9275 3300.0, 16182.0 -0.36
CC040/TauUncJ f 3246.0 1478.0   3 853.4 0.4554 2064.0, 4903.0 -1.13
CC040/TauUncJ m 11454.0 10654.0   3 6151.0 0.9302 1976.0, 22986.0 0.37
CC041/TauUncJ f 19927.0 15952.0   3 9210.0 0.8005 4449.0, 36315.0 1.71
CC041/TauUncJ m 13420.0 10719.0   2   7579.0 0.7988 5840.0, 20999.0 0.77
CC043/GeniUncJ f 7073.0 2899.0   2   2050.0 0.4099 5023.0, 9123.0 -0.48
CC043/GeniUncJ m 11061.0 9520.0   2   6732.0 0.8607 4329.0, 17793.0 0.29
CC044/UncJ f 2200.0 0.0   1   0.0 0.0 2200.0, 2200.0 -1.31
CC051/TauUncJ f 20534.0 0.0   1   0.0 0.0 20534.0, 20534.0 1.82
CC051/TauUncJ m 8207.0 0.0   1   0.0 0.0 8207.0, 8207.0 -0.28
CC057/UncJ f 4204.0 912.9   2   645.5 0.2171 3559.0, 4850.0 -0.97
CC057/UncJ m 10382.0 6504.0   2   4599.0 0.6265 5783.0, 14981.0 0.15
CC059/TauUncJ f 26434.0 25437.0   4 12719.0 0.9623 9254.0, 63410.0 2.82
CC059/TauUncJ m 17417.0 8048.0   5 3599.0 0.4621 4968.0, 26017.0 1.57
CC060/UncJ f 3066.0 0.0   1   0.0 0.0 3066.0, 3066.0 -1.16
CC060/UncJ m 5795.0 0.0   1   0.0 0.0 5795.0, 5795.0 -0.77
CC061/GeniUncJ f 16265.0 13754.0   3 7941.0 0.8456 4498.0, 31386.0 1.09
CC061/GeniUncJ m 14360.0 6957.0   2   4919.0 0.4845 9440.0, 19279.0 0.95
CC074/UncJ f 3469.0 0.0   1   0.0 0.0 3469.0, 3469.0 -1.09
CC074/UncJ m 6213.0 0.0   1   0.0 0.0 6213.0, 6213.0 -0.69
CC075/UncJ f 4604.0 3623.0   2   2562.0 0.7869 2042.0, 7165.0 -0.9
CC075/UncJ m 2956.0 0.0   1   0.0 0.0 2956.0, 2956.0 -1.34
CC078/TauUncJ f 8854.0 5945.0   3 3432.0 0.6714 5215.0, 15715.0 -0.17
CC078/TauUncJ m 9753.0 9684.0   3 5591.0 0.9929 3665.0, 20920.0 0.03
CC079/TauUncJ f 6454.0 0.0   1   0.0 0.0 6454.0, 6454.0 -0.58
CC079/TauUncJ m 7182.0 2986.0   2   2112.0 0.4158 5070.0, 9293.0 -0.49
CC080/TauUncJ f 6653.0 4185.0   2   2959.0 0.629 3694.0, 9612.0 -0.55
CC080/TauUncJ m 3851.0 0.0   1   0.0 0.0 3851.0, 3851.0 -1.16
CC084/TauJ f 24577.0 28461.0   2   20125.0 1.158 4452.0, 44702.0 2.51
CC084/TauJ m 15862.0 12290.0   2   8690.0 0.7748 7172.0, 24553.0 1.26
NOD/ShiLtJ f 4378.0 2251.0   8 795.8 0.5141 1677.0, 7685.0 -0.94
NOD/ShiLtJ m 5695.0 3957.0   11 1193.0 0.6948 1815.0, 12653.0 -0.79
NZO/HlLtJ f 3118.0 1257.0   3 725.8 0.4031 1850.0, 4364.0 -1.15
NZO/HlLtJ m 3050.0 1944.0   2   1374.0 0.6374 1675.0, 4424.0 -1.32
PWK/PhJ f 9118.0 6757.0   9 2252.0 0.7411 2259.0, 21747.0 -0.13
PWK/PhJ m 11128.0 11508.0   8 4069.0 1.0342 4000.0, 38310.0 0.3
WSB/EiJ f 10219.0 5478.0   8 1937.0 0.5361 5667.0, 22441.0 0.06
WSB/EiJ m 6016.0 3788.0   6 1547.0 0.6296 2775.0, 11969.0 -0.73


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 10336.0 4425.4338234757 19064.7101459727 1607.2898540272
129S1/SvImJ m 6267.25 3832.5381138969 13826.5347286834 -1292.0347286834
A/J f 17004.3333333333 3129.254266272 23176.4634685624 10832.2031981041
A/J m 15663.5999999999 3427.9262996129 22424.8298058448 8902.3701941551
C57BL/6J f 12198.4285714286 2048.5777919935 16239.0362205437 8157.8209223135
C57BL/6J m 11710.1818181818 2311.1074397331 16268.6020233648 7151.7616129988
CAST/EiJ f 13199.4 2423.909931864 17980.3114448735 8418.4885551265
CAST/EiJ m 14150.125 2710.0136894924 19495.3464925719 8804.903507428
CC001/UncJ f 9301.0 4425.4338234757 18029.7101459729 572.2898540272
CC001/UncJ m 7340.5 5420.0273789847 18030.9429851439 -3349.9429851439
CC002/UncJ f 5902.4999999999 3832.5381138968 13461.7847286832 -1656.7847286834
CC002/UncJ m 5297.0 3832.5381138969 12856.2847286835 -2262.2847286835
CC003/UncJ f 7876.9999999999 5420.0273789847 18567.4429851438 -2813.4429851439
CC003/UncJ m 11424.6666666666 4425.4338234757 20153.3768126394 2695.9565206938
CC005/TauUncJ f 9772.3333333334 4425.4338234757 18501.0434793062 1043.6231873606
CC005/TauUncJ m 3105.0000000001 5420.0273789847 13795.442985144 -7585.4429851438
CC006/TauUncJ f 6420.9999999999 5420.0273789847 17111.4429851438 -4269.4429851439
CC006/TauUncJ m 6059.9999999999 5420.0273789847 16750.4429851438 -4630.442985144
CC009/UncJ f 5751.0 5420.0273789848 16441.442985144 -4939.4429851439
CC009/UncJ m 3480.0 5420.0273789847 14170.4429851439 -7210.4429851438
CC011/UncJ f 10096.3333333333 4425.4338234757 18825.043479306 1367.6231873606
CC011/UncJ m 4871.0 4425.4338234757 13599.7101459728 -3857.7101459728
CC013/GeniUncJ f 9426.0 5420.0273789847 20116.4429851439 -1264.4429851439
CC013/GeniUncJ m 8345.5 5420.0273789847 19035.9429851439 -2344.9429851439
CC016/GeniUncJ f 11193.6666666667 4425.4338234757 19922.3768126395 2464.9565206939
CC016/GeniUncJ m 5605.5000000001 3832.5381138969 13164.7847286835 -1953.7847286833
CC017/UncJ f 3127.0 5420.0273789847 13817.4429851439 -7563.4429851439
CC017/UncJ m 3471.0 4425.4338234757 12199.7101459727 -5257.7101459728
CC018/UncJ f 6784.3333333334 4425.4338234757 15513.0434793061 -1944.3768126394
CC018/UncJ m 5429.5 5420.0273789848 16119.9429851439 -5260.9429851439
CC019/TauUncJ f 9813.7500000001 3832.5381138969 17373.0347286835 2254.4652713166
CC019/TauUncJ m 8500.5000000001 3832.5381138969 16059.7847286834 941.2152713167
CC025/GeniUncJ f 12719.6666666666 4425.4338234757 21448.3768126394 3990.9565206939
CC025/GeniUncJ m 8581.9999999999 4425.4338234757 17310.7101459727 -146.7101459729
CC027/GeniUncJ f 6846.5 5420.0273789848 17536.9429851439 -3843.9429851439
CC027/GeniUncJ m 9242.75 3832.5381138969 16802.0347286834 1683.4652713166
CC028/GeniUncJ f 19538.3333333334 4425.4338234757 28267.0434793062 10809.6231873606
CC028/GeniUncJ m 16120.6666666667 4425.4338234757 24849.3768126394 7391.9565206939
CC030/GeniUncJ f 6044.0 5420.0273789848 16734.4429851439 -4646.4429851439
CC030/GeniUncJ m 10059.5 5420.0273789848 20749.9429851439 -630.9429851439
CC033/GeniUncJ f 19705.0 5420.0273789847 30395.4429851438 9014.5570148561
CC033/GeniUncJ m 7224.5 5420.0273789847 17914.9429851439 -3465.9429851439
CC036/UncJ f 7123.3333333334 4425.4338234757 15852.0434793061 -1605.3768126394
CC036/UncJ m 5934.3333333334 4425.4338234757 14663.0434793061 -2794.3768126394
CC037/TauUncJ f 9969.5 5420.0273789847 20659.9429851438 -720.9429851439
CC037/TauUncJ m 7818.0 4425.4338234757 16546.7101459728 -910.7101459728
CC040/TauUncJ f 3245.6666666667 4425.4338234757 11974.3768126395 -5483.0434793061
CC040/TauUncJ m 11454.3333333333 4425.4338234757 20183.0434793061 2725.6231873605
CC041/TauUncJ f 19927.0 4425.4338234757 28655.7101459728 11198.2898540272
CC041/TauUncJ m 13419.5 5420.0273789847 24109.9429851439 2729.0570148561
CC043/GeniUncJ f 7073.0000000001 5420.0273789848 17763.442985144 -3617.4429851439
CC043/GeniUncJ m 11061.0 5420.0273789847 21751.4429851439 370.5570148562
CC057/UncJ f 4204.5 5420.0273789848 14894.9429851439 -6485.942985144
CC057/UncJ m 10382.0 5420.0273789847 21072.4429851439 -308.4429851439
CC059/TauUncJ f 26433.4999999999 3832.5381138969 33992.7847286833 18874.2152713165
CC059/TauUncJ m 17416.5999999999 3427.9262996129 24177.8298058448 10655.3701941551
CC061/GeniUncJ f 16265.0 4425.4338234757 24993.7101459728 7536.2898540272
CC061/GeniUncJ m 14359.5 5420.0273789847 25049.9429851439 3669.0570148561
CC078/TauUncJ f 8854.3333333333 4425.4338234757 17583.0434793061 125.6231873606
CC078/TauUncJ m 9753.3333333333 4425.4338234757 18482.0434793061 1024.6231873605
CC084/TauJ f 24577.0 5420.0273789848 35267.4429851439 13886.5570148561
CC084/TauJ m 15862.5000000001 5420.0273789847 26552.942985144 5172.0570148562
NOD/ShiLtJ f 4378.0 2710.0136894924 9723.221492572 -967.2214925719
NOD/ShiLtJ m 5695.0909090909 2311.1074397331 10253.5111142739 1136.6707039079
NZO/HlLtJ f 3118.3333333335 4425.4338234757 11847.0434793062 -5610.3768126393
NZO/HlLtJ m 3049.5000000001 5420.0273789847 13739.9429851439 -7640.9429851438
PWK/PhJ f 9117.5555555556 2555.0254092646 14157.0787080112 4078.0324030999
PWK/PhJ m 11127.5 2710.0136894924 16472.7214925719 5782.278507428
WSB/EiJ f 10219.0 2710.0136894924 15564.221492572 4873.7785074281
WSB/EiJ m 6016.5 3129.254266272 12188.6301352292 -155.6301352292


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 8301.625 2927.1493351226 14075.1240781525 2528.1259218474
A/J both 16333.9666666666 2320.7170755264 20911.340883771 11756.5924495622
C57BL/6J both 11954.3051948052 1544.1736113403 15000.0278077949 8908.5825818155
CAST/EiJ both 13674.7625 1817.932448898 17260.4460836551 10089.0789163449
CC001/UncJ both 8320.75 3498.6126291327 15221.4012741737 1420.0987258263
CC002/UncJ both 5599.7499999999 2710.0136894924 10944.9714925719 254.528507428
CC003/UncJ both 9650.8333333333 3498.6126291327 16551.4846075069 2750.1820591596
CC005/TauUncJ both 6438.6666666667 3498.6126291327 13339.3179408405 -461.984607507
CC006/TauUncJ both 6240.4999999999 3832.5381138969 13799.7847286833 -1318.7847286835
CC009/UncJ both 4615.5 3832.5381138969 12174.7847286834 -2943.7847286834
CC011/UncJ both 7483.6666666666 3129.254266272 13655.7968018958 1311.5365314375
CC013/GeniUncJ both 8885.75 3832.5381138969 16445.0347286834 1326.4652713166
CC016/GeniUncJ both 8399.5833333334 2927.1493351226 14173.082411486 2626.0842551808
CC017/UncJ both 3299.0 3498.6126291327 10199.6512741737 -3601.6512741737
CC018/UncJ both 6106.9166666667 3498.6126291327 13007.5679408404 -793.734607507
CC019/TauUncJ both 9157.1250000001 2710.0136894924 14502.346492572 3811.9035074281
CC025/GeniUncJ both 10650.8333333333 3129.254266272 16822.9634685624 4478.7031981041
CC027/GeniUncJ both 8044.625 3319.0753676068 14591.1576094796 1498.0923905204
CC028/GeniUncJ both 17829.5 3129.254266272 24001.6301352292 11657.3698647708
CC030/GeniUncJ both 8051.75 3832.5381138969 15611.0347286834 492.4652713165
CC033/GeniUncJ both 13464.75 3832.5381138969 21024.0347286834 5905.4652713166
CC036/UncJ both 6528.8333333334 3129.254266272 12700.9634685625 356.7031981042
CC037/TauUncJ both 8893.75 3498.6126291327 15794.4012741736 1993.0987258263
CC040/TauUncJ both 7350.0 3129.254266272 13522.1301352292 1177.8698647708
CC041/TauUncJ both 16673.25 3498.6126291327 23573.9012741737 9772.5987258263
CC043/GeniUncJ both 9067.0000000001 3832.5381138969 16626.2847286835 1507.7152713166
CC057/UncJ both 7293.25 3832.5381138969 14852.5347286834 -266.0347286834
CC059/TauUncJ both 21925.0499999999 2570.9447247097 26995.9723543836 16854.1276456163
CC061/GeniUncJ both 15312.25 3498.6126291327 22212.9012741737 8411.5987258263
CC078/TauUncJ both 9303.8333333333 3129.254266272 15475.9634685625 3131.7031981042
CC084/TauJ both 20219.7500000001 3832.5381138969 27779.0347286835 12660.4652713167
NOD/ShiLtJ both 5036.5454545455 1780.8278829821 8549.0441225763 1524.0467865146
NZO/HlLtJ both 3083.9166666668 3498.6126291327 9984.5679408405 -3816.7346075069
PWK/PhJ both 10122.5277777778 1862.2787814411 13795.6799121437 6449.3756434118
WSB/EiJ both 8117.75 2069.8071444109 12200.230349336 4035.269650664




GWAS analysis not available: Strain panel must be either Inbred, HMDP, BXD, BXH, CXB, or AXB/BXA