Project measure / variable:   CSNA03   trial_init_latency_cc_rev_JAX

ID, description, units MPD:110504   trial_init_latency_cc_rev_JAX   mean latency across trials between illumination of central hole and initiation of trial (reversal learning assay), CC   [centiseconds/n]  reversal  
Data set, strains CSNA03   CC w/par   52 strains     sex: both     age:
Procedure operant conditioning chamber
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  STRAIN COMPARISON PLOT
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CSNA03 - mean latency across trials between illumination of central hole and initiation of trial (reversal learning assay), CC reversal



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested51 strains49 strains
Mean of the strain means523.7   centiseconds/n 549.0   centiseconds/n
Median of the strain means384.0   centiseconds/n 361.6   centiseconds/n
SD of the strain means± 370.7 ± 522.2
Coefficient of variation (CV)0.7078 0.9512
Min–max range of strain means157.2   –   1523.0   centiseconds/n 114.9   –   2946.0   centiseconds/n
Mean sample size per strain3.0   mice 3.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 1702.1999 1702.1999 0.0102 0.9199
strain 34 14436827.7776 424612.5817 2.5321 < 0.0001
sex:strain 34 5862700.9298 172432.3803 1.0283 0.4335
Residuals 192 32196573.8733 167690.4889


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page:
Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 1365.0 1287.0   3 743.3 0.9434 230.2, 2764.0 2.27
129S1/SvImJ m 915.5 643.7   4 321.8 0.7031 222.0, 1692.0 0.7
A/J f 502.3 237.6   6 97.01 0.4731 256.1, 895.3 -0.06
A/J m 852.4 883.9   5 395.3 1.0369 241.6, 2321.0 0.58
C57BL/6J f 439.8 193.8   14 51.8 0.4407 136.0, 771.2 -0.23
C57BL/6J m 443.3 221.5   11 66.8 0.4998 99.91, 703.8 -0.2
CAST/EiJ f 193.6 75.27   10 23.804 0.3888 97.54, 296.8 -0.89
CAST/EiJ m 316.7 211.5   8 74.77 0.6678 95.8, 792.0 -0.44
CC001/UncJ f 857.6 147.5   3 85.15 0.172 696.0, 985.0 0.9
CC001/UncJ m 207.8 90.44   2   63.95 0.4353 143.8, 271.7 -0.65
CC002/UncJ f 923.0 714.2   4 357.1 0.7738 289.0, 1939.0 1.08
CC002/UncJ m 350.0 214.6   4 107.3 0.6132 105.5, 624.2 -0.38
CC003/UncJ f 321.7 200.3   2   141.6 0.6225 180.1, 463.3 -0.54
CC003/UncJ m 183.8 69.87   3 40.34 0.3801 131.7, 263.2 -0.7
CC004/TauUncJ f 196.2 0.0   1   0.0 0.0 196.2, 196.2 -0.88
CC004/TauUncJ m 560.6 311.3   2   220.1 0.5552 340.5, 780.7 0.02
CC005/TauUncJ f 205.8 176.2   3 101.7 0.8559 57.17, 400.4 -0.86
CC005/TauUncJ m 117.5 134.9   2   95.39 1.1479 22.125, 212.9 -0.83
CC006/TauUncJ f 168.8 151.8   2   107.3 0.8994 61.43, 276.1 -0.96
CC006/TauUncJ m 155.4 97.87   2   69.21 0.6298 86.19, 224.6 -0.75
CC007/UncJ f 400.6 0.0   1   0.0 0.0 400.6, 400.6 -0.33
CC008/GeniUncJ f 384.0 0.0   1   0.0 0.0 384.0, 384.0 -0.38
CC008/GeniUncJ m 331.2 0.0   1   0.0 0.0 331.2, 331.2 -0.42
CC009/UncJ f 351.1 218.2   2   154.3 0.6215 196.8, 505.4 -0.47
CC009/UncJ m 190.2 40.305   2   28.5 0.2119 161.7, 218.7 -0.69
CC011/UncJ f 323.2 248.1   3 143.2 0.7675 75.66, 571.8 -0.54
CC011/UncJ m 563.1 373.9   3 215.9 0.664 160.6, 899.7 0.03
CC012/GeniUncJ f 378.8 162.6   3 93.87 0.4293 283.6, 566.5 -0.39
CC012/GeniUncJ m 760.4 0.0   1   0.0 0.0 760.4, 760.4 0.4
CC013/GeniUncJ f 416.6 94.12   2   66.55 0.2259 350.0, 483.1 -0.29
CC013/GeniUncJ m 821.5 354.2   2   250.5 0.4311 571.1, 1072.0 0.52
CC015/UncJ f 212.4 0.0   1   0.0 0.0 212.4, 212.4 -0.84
CC015/UncJ m 306.8 0.0   1   0.0 0.0 306.8, 306.8 -0.46
CC016/GeniUncJ f 327.8 408.4   3 235.8 1.2458 88.99, 799.4 -0.53
CC016/GeniUncJ m 174.4 66.97   4 33.487 0.3839 76.27, 218.2 -0.72
CC017/UncJ f 278.0 270.8   2   191.5 0.9738 86.59, 469.5 -0.66
CC017/UncJ m 801.8 879.5   3 507.8 1.097 173.8, 1807.0 0.48
CC018/UncJ f 435.4 153.5   3 88.62 0.3525 262.4, 555.2 -0.24
CC018/UncJ m 306.2 129.0   2   91.25 0.4214 215.0, 397.5 -0.46
CC019/TauUncJ f 206.6 146.5   4 73.24 0.7091 62.33, 357.3 -0.86
CC019/TauUncJ m 246.3 175.1   4 87.54 0.7108 73.92, 481.0 -0.58
CC023/GeniUncJ f 354.6 197.1   2   139.4 0.5557 215.3, 494.0 -0.46
CC023/GeniUncJ m 262.5 0.0   1   0.0 0.0 262.5, 262.5 -0.55
CC025/GeniUncJ f 1376.0 997.5   3 575.9 0.725 344.8, 2336.0 2.3
CC025/GeniUncJ m 887.8 402.9   3 232.6 0.4538 652.4, 1353.0 0.65
CC026/GeniUncJ f 1523.0 0.0   1   0.0 0.0 1523.0, 1523.0 2.7
CC026/GeniUncJ m 609.0 432.8   2   306.0 0.7108 302.9, 915.0 0.11
CC027/GeniUncJ f 948.5 566.4   2   400.5 0.5971 548.0, 1349.0 1.15
CC027/GeniUncJ m 368.4 110.5   4 55.25 0.2999 264.8, 482.3 -0.35
CC028/GeniUncJ f 555.3 495.8   3 286.2 0.8927 142.0, 1105.0 0.09
CC028/GeniUncJ m 247.0 145.2   3 83.81 0.5878 130.8, 409.7 -0.58
CC029/UncJ f 191.7 0.0   1   0.0 0.0 191.7, 191.7 -0.9
CC029/UncJ m 163.9 0.0   1   0.0 0.0 163.9, 163.9 -0.74
CC030/GeniUncJ f 175.0 3.3941   2   2.4 0.0194 172.6, 177.4 -0.94
CC030/GeniUncJ m 262.5 167.2   2   118.2 0.6368 144.3, 380.7 -0.55
CC032/GeniUncJ f 168.4 105.8   2   74.82 0.6283 93.57, 243.2 -0.96
CC033/GeniUncJ f 322.4 247.8   2   175.3 0.7686 147.2, 497.7 -0.54
CC033/GeniUncJ m 216.1 173.5   2   122.7 0.803 93.4, 338.8 -0.64
CC035/UncJ m 396.0 0.0   1   0.0 0.0 396.0, 396.0 -0.29
CC036/UncJ f 245.6 45.916   3 26.509 0.187 197.6, 289.1 -0.75
CC036/UncJ m 314.9 70.34   3 40.611 0.2234 262.0, 394.7 -0.45
CC037/TauUncJ f 838.0 470.9   2   333.0 0.562 505.0, 1171.0 0.85
CC037/TauUncJ m 450.9 147.0   3 84.84 0.3259 282.6, 553.8 -0.19
CC040/TauUncJ f 936.5 803.4   3 463.9 0.8579 112.8, 1718.0 1.11
CC040/TauUncJ m 962.6 519.8   3 300.1 0.54 444.4, 1484.0 0.79
CC041/TauUncJ f 634.6 333.2   3 192.4 0.525 389.5, 1014.0 0.3
CC041/TauUncJ m 1309.0 662.0   2   468.1 0.5058 840.8, 1777.0 1.46
CC043/GeniUncJ f 298.0 1.6971   2   1.2 0.0057 296.8, 299.2 -0.61
CC043/GeniUncJ m 1130.0 1334.0   2   943.5 1.1803 187.0, 2074.0 1.11
CC044/UncJ f 375.7 0.0   1   0.0 0.0 375.7, 375.7 -0.4
CC051/TauUncJ f 1471.0 0.0   1   0.0 0.0 1471.0, 1471.0 2.56
CC051/TauUncJ m 2269.0 0.0   1   0.0 0.0 2269.0, 2269.0 3.29
CC057/UncJ f 682.4 546.8   2   386.6 0.8014 295.7, 1069.0 0.43
CC057/UncJ m 447.5 116.1   2   82.1 0.2595 365.4, 529.6 -0.19
CC059/TauUncJ f 555.0 294.8   4 147.4 0.5312 280.1, 963.0 0.08
CC059/TauUncJ m 637.4 301.4   5 134.8 0.4728 241.9, 1031.0 0.17
CC060/UncJ f 842.2 0.0   1   0.0 0.0 842.2, 842.2 0.86
CC060/UncJ m 114.9 0.0   1   0.0 0.0 114.9, 114.9 -0.83
CC061/GeniUncJ f 211.9 136.9   3 79.01 0.6457 100.0, 364.5 -0.84
CC061/GeniUncJ m 266.0 129.1   2   91.3 0.4854 174.7, 357.3 -0.54
CC074/UncJ f 157.2 0.0   1   0.0 0.0 157.2, 157.2 -0.99
CC074/UncJ m 994.0 0.0   1   0.0 0.0 994.0, 994.0 0.85
CC075/UncJ f 925.8 950.7   2   672.2 1.027 253.5, 1598.0 1.08
CC075/UncJ m 150.3 0.0   1   0.0 0.0 150.3, 150.3 -0.76
CC078/TauUncJ f 204.3 115.4   3 66.65 0.565 71.42, 279.8 -0.86
CC078/TauUncJ m 361.6 340.3   3 196.5 0.9411 153.5, 754.3 -0.36
CC079/TauUncJ f 392.3 0.0   1   0.0 0.0 392.3, 392.3 -0.35
CC079/TauUncJ m 227.4 31.325   2   22.15 0.1377 205.3, 249.6 -0.62
CC080/TauUncJ f 1211.0 592.6   2   419.0 0.4894 791.9, 1630.0 1.85
CC080/TauUncJ m 2946.0 0.0   1   0.0 0.0 2946.0, 2946.0 4.59
CC084/TauJ f 447.6 159.7   2   113.0 0.3568 334.7, 560.6 -0.21
CC084/TauJ m 261.2 44.618   2   31.55 0.1708 229.7, 292.8 -0.55
NOD/ShiLtJ f 243.3 178.3   8 63.03 0.7328 49.208, 548.9 -0.76
NOD/ShiLtJ m 347.0 318.1   11 95.92 0.917 57.89, 1179.0 -0.39
NZO/HlLtJ f 533.6 539.6   3 311.6 1.0113 173.2, 1154.0 0.03
NZO/HlLtJ m 516.5 535.1   2   378.4 1.0358 138.2, 894.9 -0.06
PWK/PhJ f 279.5 147.1   9 49.032 0.5264 79.35, 497.6 -0.66
PWK/PhJ m 638.4 504.2   8 178.2 0.7897 63.46, 1388.0 0.17
WSB/EiJ f 720.4 750.7   8 265.4 1.0421 49.806, 2406.0 0.53
WSB/EiJ m 537.1 464.1   6 189.5 0.8642 150.6, 1416.0 -0.02


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 1364.7333333333 236.4251036611 1831.0573782535 898.4092884132
129S1/SvImJ m 915.525 204.7501458629 1319.3734692964 511.6765307036
A/J f 502.2666666667 167.1777940415 832.00756106 172.5257722733
A/J m 852.44 183.134097821 1213.6530519824 491.2269480176
C57BL/6J f 439.7857142857 109.4435565301 655.6518011829 223.9196273886
C57BL/6J m 443.2554545455 123.4689835632 686.7852445119 199.725664579
CAST/EiJ f 193.594 129.4953624357 449.0101985098 -61.8221985098
CAST/EiJ m 316.7 144.7802165886 602.2639912113 31.1360087887
CC001/UncJ f 857.5666666667 236.4251036611 1323.8907115868 391.2426217465
CC001/UncJ m 207.75 289.5604331772 778.8779824225 -363.3779824225
CC002/UncJ f 922.975 204.7501458629 1326.8234692963 519.1265307036
CC002/UncJ m 350.025 204.7501458629 753.8734692964 -53.8234692964
CC003/UncJ f 321.7 289.5604331772 892.8279824225 -249.4279824225
CC003/UncJ m 183.8 236.4251036611 650.1240449201 -282.5240449201
CC005/TauUncJ f 205.8233333333 236.4251036611 672.1473782535 -260.5007115868
CC005/TauUncJ m 117.5125 289.5604331772 688.6404824225 -453.6154824225
CC006/TauUncJ f 168.765 289.5604331772 739.8929824225 -402.3629824225
CC006/TauUncJ m 155.395 289.5604331772 726.5229824225 -415.7329824225
CC009/UncJ f 351.1 289.5604331772 922.2279824225 -220.0279824225
CC009/UncJ m 190.2 289.5604331772 761.3279824225 -380.9279824225
CC011/UncJ f 323.22 236.4251036611 789.5440449201 -143.1040449201
CC011/UncJ m 563.1333333333 236.4251036611 1029.4573782535 96.8092884132
CC013/GeniUncJ f 416.55 289.5604331772 987.6779824225 -154.5779824225
CC013/GeniUncJ m 821.55 289.5604331772 1392.6779824225 250.4220175775
CC016/GeniUncJ f 327.8266666667 236.4251036611 794.1507115868 -138.4973782535
CC016/GeniUncJ m 174.4425 204.7501458629 578.2909692964 -229.4059692964
CC017/UncJ f 278.045 289.5604331772 849.1729824225 -293.0829824225
CC017/UncJ m 801.7666666667 236.4251036611 1268.0907115868 335.4426217465
CC018/UncJ f 435.4333333333 236.4251036611 901.7573782535 -30.8907115868
CC018/UncJ m 306.25 289.5604331772 877.3779824225 -264.8779824225
CC019/TauUncJ f 206.5825 204.7501458629 610.4309692964 -197.2659692964
CC019/TauUncJ m 246.305 204.7501458629 650.1534692964 -157.5434692964
CC025/GeniUncJ f 1375.9333333333 236.4251036611 1842.2573782535 909.6092884132
CC025/GeniUncJ m 887.8 236.4251036611 1354.1240449201 421.4759550798
CC027/GeniUncJ f 948.5 289.5604331772 1519.6279824225 377.3720175775
CC027/GeniUncJ m 368.375 204.7501458629 772.2234692964 -35.4734692964
CC028/GeniUncJ f 555.3333333333 236.4251036611 1021.6573782535 89.0092884132
CC028/GeniUncJ m 246.9666666667 236.4251036611 713.2907115868 -219.3573782535
CC030/GeniUncJ f 175.0 289.5604331772 746.1279824225 -396.1279824225
CC030/GeniUncJ m 262.5 289.5604331772 833.6279824225 -308.6279824225
CC033/GeniUncJ f 322.45 289.5604331772 893.5779824225 -248.6779824225
CC033/GeniUncJ m 216.1 289.5604331772 787.2279824225 -355.0279824225
CC036/UncJ f 245.6 236.4251036611 711.9240449201 -220.7240449201
CC036/UncJ m 314.8666666667 236.4251036611 781.1907115868 -151.4573782535
CC037/TauUncJ f 838.0 289.5604331772 1409.1279824225 266.8720175775
CC037/TauUncJ m 450.9 236.4251036611 917.2240449201 -15.4240449201
CC040/TauUncJ f 936.5 236.4251036611 1402.8240449201 470.1759550799
CC040/TauUncJ m 962.6333333333 236.4251036611 1428.9573782535 496.3092884132
CC041/TauUncJ f 634.6333333333 236.4251036611 1100.9573782535 168.3092884132
CC041/TauUncJ m 1308.9 289.5604331772 1880.0279824225 737.7720175775
CC043/GeniUncJ f 298.0 289.5604331772 869.1279824225 -273.1279824225
CC043/GeniUncJ m 1130.5 289.5604331772 1701.6279824225 559.3720175775
CC057/UncJ f 682.35 289.5604331772 1253.4779824225 111.2220175775
CC057/UncJ m 447.5 289.5604331772 1018.6279824225 -123.6279824225
CC059/TauUncJ f 555.0 204.7501458629 958.8484692964 151.1515307036
CC059/TauUncJ m 637.44 183.134097821 998.6530519824 276.2269480176
CC061/GeniUncJ f 211.9333333333 236.4251036611 678.2573782535 -254.3907115868
CC061/GeniUncJ m 266.0 289.5604331772 837.1279824225 -305.1279824225
CC078/TauUncJ f 204.3066666667 236.4251036611 670.6307115868 -262.0173782535
CC078/TauUncJ m 361.6 236.4251036611 827.9240449201 -104.7240449201
CC084/TauJ f 447.65 289.5604331772 1018.7779824225 -123.4779824225
CC084/TauJ m 261.25 289.5604331772 832.3779824225 -309.8779824225
NOD/ShiLtJ f 243.301 144.7802165886 528.8649912113 -42.2629912113
NOD/ShiLtJ m 346.9509090909 123.4689835632 590.4806990573 103.4211191245
NZO/HlLtJ f 533.6 236.4251036611 999.9240449202 67.2759550799
NZO/HlLtJ m 516.55 289.5604331772 1087.6779824225 -54.5779824225
PWK/PhJ f 279.4611111111 136.5000972419 548.6934239754 10.2287982469
PWK/PhJ m 638.3825 144.7802165886 923.9464912113 352.8185087887
WSB/EiJ f 720.40075 144.7802165886 1005.9647412113 434.8367587887
WSB/EiJ m 537.1 167.1777940415 866.8408943934 207.3591056066


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 1140.1291666667 156.380506995 1448.5735299738 831.6848033596
A/J both 677.3533333333 123.9823703247 921.8957255467 432.81094112
C57BL/6J both 441.5205844156 82.4961847119 604.2357696883 278.8053991428
CAST/EiJ both 255.147 97.1215218268 446.7091488824 63.5848511176
CC001/UncJ both 532.6583333333 186.9104559027 901.3198607459 163.9968059207
CC002/UncJ both 636.5 144.7802165886 922.0639912113 350.9360087887
CC003/UncJ both 252.75 186.9104559026 621.4115274126 -115.9115274126
CC005/TauUncJ both 161.6679166667 186.9104559027 530.3294440793 -206.9936107459
CC006/TauUncJ both 162.08 204.7501458629 565.9284692964 -241.7684692964
CC009/UncJ both 270.65 204.7501458629 674.4984692964 -133.1984692964
CC011/UncJ both 443.1766666667 167.1777940415 772.91756106 113.4357722733
CC013/GeniUncJ both 619.05 204.7501458629 1022.8984692964 215.2015307036
CC016/GeniUncJ both 251.1345833333 156.380506995 559.5789466404 -57.3097799738
CC017/UncJ both 539.9058333333 186.9104559027 908.5673607459 171.2443059207
CC018/UncJ both 370.8416666667 186.9104559027 739.5031940792 2.1801392541
CC019/TauUncJ both 226.44375 144.7802165886 512.0077412113 -59.1202412113
CC025/GeniUncJ both 1131.8666666667 167.1777940415 1461.60756106 802.1257722733
CC027/GeniUncJ both 658.4375 177.3188277459 1008.1805336901 308.6944663099
CC028/GeniUncJ both 401.15 167.1777940415 730.8908943934 71.4091056066
CC030/GeniUncJ both 218.75 204.7501458629 622.5984692964 -185.0984692964
CC033/GeniUncJ both 269.275 204.7501458629 673.1234692964 -134.5734692964
CC036/UncJ both 280.2333333333 167.1777940415 609.9742277267 -49.50756106
CC037/TauUncJ both 644.45 186.9104559026 1013.1115274126 275.7884725874
CC040/TauUncJ both 949.5666666667 167.1777940415 1279.30756106 619.8257722733
CC041/TauUncJ both 971.7666666667 186.9104559027 1340.4281940792 603.1051392541
CC043/GeniUncJ both 714.25 204.7501458629 1118.0984692964 310.4015307036
CC057/UncJ both 564.925 204.7501458629 968.7734692964 161.0765307036
CC059/TauUncJ both 596.22 137.3505733657 867.1297889868 325.3102110132
CC061/GeniUncJ both 238.9666666667 186.9104559027 607.6281940792 -129.6948607459
CC078/TauUncJ both 282.9533333333 167.1777940415 612.6942277267 -46.78756106
CC084/TauJ both 354.45 204.7501458629 758.2984692964 -49.3984692964
NOD/ShiLtJ both 295.1259545455 95.1392414012 482.7782604716 107.4736486193
NZO/HlLtJ both 525.075 186.9104559027 893.7365274126 156.4134725874
PWK/PhJ both 458.9218055556 99.4906875824 655.1568886617 262.6867224494
WSB/EiJ both 628.750375 110.5777169416 846.8534759132 410.6472740868




GWAS analysis not available: Strain panel must be either Inbred, HMDP, BXD, BXH, CXB, or AXB/BXA