Project measure / variable:   CSNA03   trial_init_latency_cc_acq_JAX

ID, description, units MPD:110503   trial_init_latency_cc_acq_JAX   mean latency across trials between illumination of central hole and initiation of trial (reversal learning assay), CC   [centiseconds/n]  acquisition  
Data set, strains CSNA03   CC w/par   52 strains     sex: both     age:
Procedure operant conditioning chamber
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  STRAIN COMPARISON PLOT
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CSNA03 - mean latency across trials between illumination of central hole and initiation of trial (reversal learning assay), CC acquisition



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested51 strains49 strains
Mean of the strain means389.0   centiseconds/n 396.7   centiseconds/n
Median of the strain means275.9   centiseconds/n 330.5   centiseconds/n
SD of the strain means± 321.2 ± 297.9
Coefficient of variation (CV)0.8257 0.7509
Min–max range of strain means36.885   –   1651.0   centiseconds/n 71.74   –   1686.0   centiseconds/n
Mean sample size per strain3.0   mice 3.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 34451.4588 34451.4588 0.4973 0.4816
strain 34 11380759.9596 334728.2341 4.8316 < 0.0001
sex:strain 34 5790096.2592 170296.9488 2.4581 < 0.0001
Residuals 192 13301664.8095 69279.5042


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page:
Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 1651.0 544.9   3 314.6 0.33 1276.0, 2276.0 3.93
129S1/SvImJ m 548.9 362.2   4 181.1 0.6599 224.7, 1019.0 0.51
A/J f 711.1 321.6   6 131.3 0.4523 140.0, 1067.0 1.0
A/J m 759.8 273.8   5 122.4 0.3603 596.1, 1240.0 1.22
C57BL/6J f 373.3 163.0   14 43.554 0.4365 95.32, 734.7 -0.05
C57BL/6J m 215.0 115.6   11 34.848 0.5375 31.4, 421.9 -0.61
CAST/EiJ f 189.2 78.86   10 24.939 0.4169 66.19, 356.0 -0.62
CAST/EiJ m 330.7 286.2   8 101.2 0.8653 74.05, 786.8 -0.22
CC001/UncJ f 782.1 257.5   3 148.7 0.3293 519.3, 1034.0 1.22
CC001/UncJ m 305.9 173.0   2   122.3 0.5654 183.6, 428.2 -0.3
CC002/UncJ f 141.8 37.819   4 18.91 0.2667 94.13, 182.7 -0.77
CC002/UncJ m 125.7 95.11   4 47.557 0.7565 19.25, 246.5 -0.91
CC003/UncJ f 186.4 42.214   2   29.85 0.2264 156.6, 216.3 -0.63
CC003/UncJ m 189.1 171.9   3 99.27 0.9094 66.92, 385.7 -0.7
CC004/TauUncJ f 152.4 0.0   1   0.0 0.0 152.4, 152.4 -0.74
CC004/TauUncJ m 685.6 365.6   2   258.5 0.5332 427.1, 944.1 0.97
CC005/TauUncJ f 383.0 292.2   3 168.7 0.763 133.7, 704.6 -0.02
CC005/TauUncJ m 115.9 13.435   2   9.5 0.1159 106.4, 125.4 -0.94
CC006/TauUncJ f 95.33 63.04   2   44.575 0.6613 50.75, 139.9 -0.91
CC006/TauUncJ m 75.14 26.722   2   18.895 0.3556 56.24, 94.03 -1.08
CC007/UncJ f 424.7 0.0   1   0.0 0.0 424.7, 424.7 0.11
CC008/GeniUncJ f 153.4 0.0   1   0.0 0.0 153.4, 153.4 -0.73
CC008/GeniUncJ m 256.5 0.0   1   0.0 0.0 256.5, 256.5 -0.47
CC009/UncJ f 303.6 81.03   2   57.3 0.2669 246.3, 360.9 -0.27
CC009/UncJ m 138.2 9.1924   2   6.5 0.0665 131.7, 144.7 -0.87
CC011/UncJ f 303.5 203.4   3 117.4 0.6701 107.7, 513.7 -0.27
CC011/UncJ m 474.2 386.4   3 223.1 0.8149 222.9, 919.2 0.26
CC012/GeniUncJ f 210.2 25.993   3 15.007 0.1237 187.2, 238.4 -0.56
CC012/GeniUncJ m 444.7 0.0   1   0.0 0.0 444.7, 444.7 0.16
CC013/GeniUncJ f 734.2 108.8   2   76.95 0.1482 657.2, 811.1 1.07
CC013/GeniUncJ m 395.3 48.083   2   34.0 0.1216 361.3, 429.3 0.0
CC015/UncJ f 1008.0 0.0   1   0.0 0.0 1008.0, 1008.0 1.93
CC015/UncJ m 868.6 0.0   1   0.0 0.0 868.6, 868.6 1.58
CC016/GeniUncJ f 118.2 51.85   3 29.936 0.4386 69.76, 172.9 -0.84
CC016/GeniUncJ m 176.2 67.42   4 33.71 0.3827 99.55, 247.6 -0.74
CC017/UncJ f 106.2 21.043   2   14.88 0.1981 91.34, 121.1 -0.88
CC017/UncJ m 168.8 186.0   3 107.4 1.1015 33.667, 380.9 -0.77
CC018/UncJ f 382.1 241.3   3 139.3 0.6316 105.4, 549.0 -0.02
CC018/UncJ m 134.8 59.68   2   42.2 0.4427 92.6, 177.0 -0.88
CC019/TauUncJ f 204.3 149.3   4 74.67 0.731 75.64, 419.9 -0.58
CC019/TauUncJ m 405.5 398.6   4 199.3 0.9832 152.2, 998.0 0.03
CC023/GeniUncJ f 400.5 464.4   2   328.4 1.1594 72.17, 728.9 0.04
CC023/GeniUncJ m 819.6 0.0   1   0.0 0.0 819.6, 819.6 1.42
CC025/GeniUncJ f 813.2 154.1   3 88.94 0.1894 690.0, 985.9 1.32
CC025/GeniUncJ m 354.6 176.5   3 101.9 0.4977 178.1, 531.1 -0.14
CC026/GeniUncJ f 269.0 0.0   1   0.0 0.0 269.0, 269.0 -0.37
CC026/GeniUncJ m 657.1 755.0   2   533.8 1.1489 123.3, 1191.0 0.87
CC027/GeniUncJ f 275.9 162.4   2   114.8 0.5888 161.0, 390.7 -0.35
CC027/GeniUncJ m 508.3 307.1   4 153.6 0.6042 230.7, 867.2 0.37
CC028/GeniUncJ f 706.8 429.7   3 248.1 0.608 236.0, 1078.0 0.99
CC028/GeniUncJ m 281.6 120.7   3 69.66 0.4285 160.2, 401.5 -0.39
CC029/UncJ f 109.4 0.0   1   0.0 0.0 109.4, 109.4 -0.87
CC029/UncJ m 209.2 0.0   1   0.0 0.0 209.2, 209.2 -0.63
CC030/GeniUncJ f 96.96 35.836   2   25.34 0.3696 71.62, 122.3 -0.91
CC030/GeniUncJ m 155.4 105.2   2   74.36 0.6765 81.09, 229.8 -0.81
CC032/GeniUncJ f 299.8 82.66   2   58.45 0.2758 241.3, 358.2 -0.28
CC033/GeniUncJ f 255.0 26.729   2   18.9 0.1048 236.1, 273.9 -0.42
CC033/GeniUncJ m 532.0 506.9   2   358.5 0.9528 173.6, 890.5 0.45
CC035/UncJ m 178.2 0.0   1   0.0 0.0 178.2, 178.2 -0.73
CC036/UncJ f 271.6 27.727   3 16.008 0.1021 241.5, 296.1 -0.37
CC036/UncJ m 547.7 308.9   3 178.3 0.5639 219.8, 833.1 0.51
CC037/TauUncJ f 493.1 212.4   2   150.2 0.4308 342.9, 643.3 0.32
CC037/TauUncJ m 277.8 76.72   3 44.295 0.2762 190.1, 332.5 -0.4
CC040/TauUncJ f 572.0 480.4   3 277.3 0.8398 152.5, 1096.0 0.57
CC040/TauUncJ m 687.4 561.2   3 324.0 0.8164 53.25, 1120.0 0.98
CC041/TauUncJ f 667.3 300.7   3 173.6 0.4506 320.4, 852.6 0.87
CC041/TauUncJ m 1686.0 749.5   2   530.0 0.4446 1156.0, 2216.0 4.33
CC043/GeniUncJ f 469.9 572.2   2   404.6 1.2176 65.33, 874.5 0.25
CC043/GeniUncJ m 409.5 523.2   2   369.9 1.2777 39.54, 779.4 0.04
CC044/UncJ f 76.17 0.0   1   0.0 0.0 76.17, 76.17 -0.97
CC051/TauUncJ f 1179.0 0.0   1   0.0 0.0 1179.0, 1179.0 2.46
CC051/TauUncJ m 1121.0 0.0   1   0.0 0.0 1121.0, 1121.0 2.43
CC057/UncJ f 154.8 87.78   2   62.07 0.5669 92.76, 216.9 -0.73
CC057/UncJ m 619.7 356.5   2   252.1 0.5753 367.6, 871.8 0.75
CC059/TauUncJ f 620.3 408.7   4 204.3 0.6588 293.8, 1214.0 0.72
CC059/TauUncJ m 569.7 298.6   5 133.6 0.5242 260.8, 919.3 0.58
CC060/UncJ f 54.68 0.0   1   0.0 0.0 54.68, 54.68 -1.04
CC060/UncJ m 157.4 0.0   1   0.0 0.0 157.4, 157.4 -0.8
CC061/GeniUncJ f 198.8 46.232   3 26.692 0.2325 146.1, 232.4 -0.59
CC061/GeniUncJ m 171.1 75.66   2   53.5 0.4422 117.6, 224.6 -0.76
CC074/UncJ f 173.6 0.0   1   0.0 0.0 173.6, 173.6 -0.67
CC074/UncJ m 250.6 0.0   1   0.0 0.0 250.6, 250.6 -0.49
CC075/UncJ f 36.885 6.5542   2   4.6345 0.1777 32.25, 41.519 -1.1
CC075/UncJ m 197.3 0.0   1   0.0 0.0 197.3, 197.3 -0.67
CC078/TauUncJ f 198.0 93.54   3 54.0 0.4723 106.9, 293.8 -0.59
CC078/TauUncJ m 281.3 232.5   3 134.2 0.8264 127.7, 548.8 -0.39
CC079/TauUncJ f 217.5 0.0   1   0.0 0.0 217.5, 217.5 -0.53
CC079/TauUncJ m 142.5 41.295   2   29.2 0.2898 113.3, 171.7 -0.85
CC080/TauUncJ f 936.0 469.5   2   332.0 0.5016 604.0, 1268.0 1.7
CC080/TauUncJ m 330.5 0.0   1   0.0 0.0 330.5, 330.5 -0.22
CC084/TauJ f 289.0 269.0   2   190.2 0.931 98.74, 479.2 -0.31
CC084/TauJ m 350.5 95.67   2   67.65 0.273 282.8, 418.1 -0.16
NOD/ShiLtJ f 254.5 255.9   8 90.47 1.0056 53.92, 655.4 -0.42
NOD/ShiLtJ m 307.1 269.2   11 81.16 0.8765 58.95, 992.9 -0.3
NZO/HlLtJ f 537.3 621.1   3 358.6 1.1558 128.3, 1252.0 0.46
NZO/HlLtJ m 71.74 0.14142   2   0.1 0.002 71.64, 71.84 -1.09
PWK/PhJ f 229.0 137.4   9 45.811 0.6002 96.05, 462.5 -0.5
PWK/PhJ m 374.7 185.6   8 65.61 0.4952 82.43, 703.5 -0.07
WSB/EiJ f 368.8 427.4   8 151.1 1.1591 50.56, 1264.0 -0.06
WSB/EiJ m 374.6 198.5   6 81.02 0.5298 144.8, 705.0 -0.07


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 1651.0 151.9643644808 1950.7339793069 1351.2660206931
129S1/SvImJ m 548.85 131.6050001103 808.4272404572 289.2727595428
A/J f 711.1 107.4550326231 923.0439293199 499.1560706801
A/J m 759.82 117.7110905702 991.9929420296 527.6470579704
C57BL/6J f 373.33 70.3458315427 512.0798713136 234.5801286864
C57BL/6J m 215.0472727273 79.3608010728 371.5782383113 58.5163071432
CAST/EiJ f 189.159 83.2343103631 353.3300617172 24.9879382828
CAST/EiJ m 330.73625 93.0587880161 514.2850769689 147.1874230311
CC001/UncJ f 782.1333333333 151.9643644808 1081.8673126402 482.3993540264
CC001/UncJ m 305.9 186.1175760321 672.9976539379 -61.1976539379
CC002/UncJ f 141.8075 131.6050001103 401.3847404572 -117.7697404572
CC002/UncJ m 125.7325 131.6050001103 385.3097404572 -133.8447404572
CC003/UncJ f 186.45 186.1175760321 553.5476539379 -180.6476539379
CC003/UncJ m 189.0733333333 151.9643644808 488.8073126402 -110.6606459736
CC005/TauUncJ f 383.0 151.9643644808 682.7339793069 83.2660206931
CC005/TauUncJ m 115.9 186.1175760321 482.9976539379 -251.1976539379
CC006/TauUncJ f 95.325 186.1175760321 462.4226539379 -271.7726539379
CC006/TauUncJ m 75.135 186.1175760321 442.2326539379 -291.9626539379
CC009/UncJ f 303.6 186.1175760321 670.6976539379 -63.4976539379
CC009/UncJ m 138.2 186.1175760321 505.2976539379 -228.8976539379
CC011/UncJ f 303.5 151.9643644808 603.2339793069 3.7660206931
CC011/UncJ m 474.2333333333 151.9643644808 773.9673126402 174.4993540265
CC013/GeniUncJ f 734.15 186.1175760321 1101.2476539379 367.0523460621
CC013/GeniUncJ m 395.3 186.1175760321 762.3976539379 28.2023460621
CC016/GeniUncJ f 118.22 151.9643644808 417.9539793069 -181.5139793069
CC016/GeniUncJ m 176.1875 131.6050001103 435.7647404572 -83.3897404572
CC017/UncJ f 106.22 186.1175760321 473.3176539379 -260.8776539379
CC017/UncJ m 168.8223333333 151.9643644808 468.5563126402 -130.9116459736
CC018/UncJ f 382.1 151.9643644808 681.8339793069 82.3660206931
CC018/UncJ m 134.8 186.1175760321 501.8976539379 -232.2976539379
CC019/TauUncJ f 204.31 131.6050001103 463.8872404572 -55.2672404572
CC019/TauUncJ m 405.475 131.6050001103 665.0522404572 145.8977595428
CC025/GeniUncJ f 813.1666666667 151.9643644808 1112.9006459735 513.4326873598
CC025/GeniUncJ m 354.6 151.9643644808 654.3339793069 54.8660206931
CC027/GeniUncJ f 275.85 186.1175760321 642.9476539379 -91.2476539379
CC027/GeniUncJ m 508.325 131.6050001103 767.9022404572 248.7477595428
CC028/GeniUncJ f 706.7666666667 151.9643644808 1006.5006459735 407.0326873598
CC028/GeniUncJ m 281.5666666667 151.9643644808 581.3006459735 -18.1673126402
CC030/GeniUncJ f 96.96 186.1175760321 464.0576539379 -270.1376539379
CC030/GeniUncJ m 155.445 186.1175760321 522.5426539379 -211.6526539379
CC033/GeniUncJ f 255.0 186.1175760321 622.0976539379 -112.0976539379
CC033/GeniUncJ m 532.05 186.1175760321 899.1476539379 164.9523460621
CC036/UncJ f 271.6 151.9643644808 571.3339793069 -28.1339793069
CC036/UncJ m 547.7333333333 151.9643644808 847.4673126402 247.9993540264
CC037/TauUncJ f 493.1 186.1175760321 860.1976539379 126.0023460621
CC037/TauUncJ m 277.8 151.9643644808 577.5339793069 -21.9339793069
CC040/TauUncJ f 571.9666666667 151.9643644808 871.7006459736 272.2326873598
CC040/TauUncJ m 687.3833333333 151.9643644808 987.1173126402 387.6493540265
CC041/TauUncJ f 667.3333333333 151.9643644808 967.0673126402 367.5993540264
CC041/TauUncJ m 1686.0 186.1175760321 2053.0976539379 1318.9023460621
CC043/GeniUncJ f 469.915 186.1175760321 837.0126539379 102.8173460621
CC043/GeniUncJ m 409.47 186.1175760321 776.5676539379 42.3723460621
CC057/UncJ f 154.83 186.1175760321 521.9276539379 -212.2676539379
CC057/UncJ m 619.7 186.1175760321 986.7976539379 252.6023460621
CC059/TauUncJ f 620.275 131.6050001103 879.8522404572 360.6977595428
CC059/TauUncJ m 569.68 117.7110905702 801.8529420296 337.5070579704
CC061/GeniUncJ f 198.8333333333 151.9643644808 498.5673126402 -100.9006459736
CC061/GeniUncJ m 171.1 186.1175760321 538.1976539379 -195.9976539379
CC078/TauUncJ f 198.0333333333 151.9643644808 497.7673126402 -101.7006459736
CC078/TauUncJ m 281.3333333333 151.9643644808 581.0673126402 -18.4006459735
CC084/TauJ f 288.97 186.1175760321 656.0676539379 -78.1276539379
CC084/TauJ m 350.45 186.1175760321 717.5476539379 -16.6476539379
NOD/ShiLtJ f 254.47 93.0587880161 438.0188269689 70.9211730311
NOD/ShiLtJ m 307.1036363636 79.3608010728 463.6346019477 150.5726707796
NZO/HlLtJ f 537.3333333333 151.9643644808 837.0673126402 237.5993540265
NZO/HlLtJ m 71.74 186.1175760321 438.8376539379 -295.3576539379
PWK/PhJ f 228.9655555556 87.7366667402 402.0170491937 55.9140619174
PWK/PhJ m 374.72875 93.0587880161 558.2775769689 191.1799230311
WSB/EiJ f 368.77375 93.0587880161 552.3225769689 185.224923031
WSB/EiJ m 374.6 107.4550326231 586.5439293199 162.6560706801


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 1099.925 100.51497914 1298.1803921804 901.6696078195
A/J both 735.46 79.690785037 892.6418247972 578.2781752028
C57BL/6J both 294.1886363636 53.0251656347 398.775287013 189.6019857143
CAST/EiJ both 259.947625 62.4257327723 383.0759212879 136.8193287121
CC001/UncJ both 544.0166666667 120.1383787348 780.9771833555 307.0561499778
CC002/UncJ both 133.77 93.0587880161 317.318826969 -49.7788269689
CC003/UncJ both 187.7616666667 120.1383787348 424.7221833555 -49.1988500222
CC005/TauUncJ both 249.45 120.1383787348 486.4105166889 12.4894833111
CC006/TauUncJ both 85.23 131.6050001103 344.8072404572 -174.3472404572
CC009/UncJ both 220.9 131.6050001103 480.4772404572 -38.6772404572
CC011/UncJ both 388.8666666667 107.4550326231 600.8105959866 176.9227373467
CC013/GeniUncJ both 564.725 131.6050001103 824.3022404572 305.1477595428
CC016/GeniUncJ both 147.20375 100.51497914 345.4591421804 -51.0516421805
CC017/UncJ both 137.5211666667 120.1383787348 374.4816833555 -99.4393500222
CC018/UncJ both 258.45 120.1383787348 495.4105166889 21.4894833111
CC019/TauUncJ both 304.8925 93.0587880161 488.4413269689 121.343673031
CC025/GeniUncJ both 583.8833333333 107.4550326231 795.8272626533 371.9394040134
CC027/GeniUncJ both 392.0875 113.9732733606 616.8879844802 167.2870155198
CC028/GeniUncJ both 494.1666666667 107.4550326231 706.1105959866 282.2227373467
CC030/GeniUncJ both 126.2025 131.6050001103 385.7797404572 -133.3747404572
CC033/GeniUncJ both 393.525 131.6050001103 653.1022404572 133.9477595428
CC036/UncJ both 409.6666666667 107.4550326231 621.6105959866 197.7227373467
CC037/TauUncJ both 385.45 120.1383787348 622.4105166889 148.4894833111
CC040/TauUncJ both 629.675 107.4550326231 841.6189293199 417.7310706801
CC041/TauUncJ both 1176.6666666667 120.1383787348 1413.6271833555 939.7061499778
CC043/GeniUncJ both 439.6925 131.6050001103 699.2697404572 180.1152595428
CC057/UncJ both 387.265 131.6050001103 646.8422404572 127.6877595428
CC059/TauUncJ both 594.9775 88.2833179277 769.1072065222 420.8477934778
CC061/GeniUncJ both 184.9666666667 120.1383787348 421.9271833555 -51.9938500222
CC078/TauUncJ both 239.6833333333 107.4550326231 451.6272626533 27.7394040134
CC084/TauJ both 319.71 131.6050001103 579.2872404572 60.1327595428
NOD/ShiLtJ both 280.7868181818 61.1516041775 401.4020276999 160.1716086637
NZO/HlLtJ both 304.5366666667 120.1383787348 541.4971833556 67.5761499778
PWK/PhJ both 301.8471527778 63.948535397 427.9790196196 175.7152859359
WSB/EiJ both 371.686875 71.0748233607 511.8746072176 231.4991427824




GWAS analysis not available: Strain panel must be either Inbred, HMDP, BXD, BXH, CXB, or AXB/BXA