Project measure / variable:   CSNA03   latency_cc_acq_JAX

ID, description, units MPD:110501   latency_cc_acq_JAX   latency (reversal learning assay), CC    acquisition   informational
Data set, strains CSNA03   CC w/par   52 strains     sex: both     age:
Procedure operant conditioning chamber
Ontology mappings

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  STRAIN COMPARISON PLOT
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CSNA03 - latency (reversal learning assay), CC acquisition



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested51 strains49 strains
Mean of the strain means56636.0   None 50285.0   None
Median of the strain means28785.0   None 36171.0   None
SD of the strain means± 64174.0 ± 47732.0
Coefficient of variation (CV)1.1331 0.9492
Min–max range of strain means1466.0   –   324832.0   None 2474.0   –   191779.0   None
Mean sample size per strain3.0   mice 3.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 7625106068.2793 7625106068.2793 2.4424 0.1197
strain 34 467438267872.7299 13748184349.1979 4.4038 < 0.0001
sex:strain 34 208823660811.2053 6141872376.8002 1.9673 0.0023
Residuals 192 599409657685.2238 3121925300.4439


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page:
Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 324832.0 129939.0   3 75021.0 0.4 174793.0, 400532.0 4.18
129S1/SvImJ m 76060.0 96447.0   4 48223.0 1.268 6291.0, 212026.0 0.54
A/J f 147092.0 74430.0   6 30386.0 0.506 4199.0, 203725.0 1.41
A/J m 170429.0 69324.0   5 31003.0 0.4068 82853.0, 239051.0 2.52
C57BL/6J f 47138.0 34984.0   14 9350.0 0.7422 2097.0, 122687.0 -0.15
C57BL/6J m 19802.0 17395.0   11 5245.0 0.8785 628.0, 65383.0 -0.64
CAST/EiJ f 24792.0 20647.0   10 6529.0 0.8328 5120.0, 71206.0 -0.5
CAST/EiJ m 62037.0 67270.0   8 23783.0 1.0843 2068.0, 172775.0 0.25
CC001/UncJ f 103440.0 24149.0   3 13943.0 0.2335 76855.0, 124021.0 0.73
CC001/UncJ m 40043.0 25723.0   2   18189.0 0.6424 21854.0, 58232.0 -0.21
CC002/UncJ f 10290.0 4927.0   4 2464.0 0.4789 4236.0, 15003.0 -0.72
CC002/UncJ m 9756.0 6498.0   4 3249.0 0.666 385.0, 15355.0 -0.85
CC003/UncJ f 19925.0 23528.0   2   16637.0 1.1808 3288.0, 36562.0 -0.57
CC003/UncJ m 20037.0 19392.0   3 11196.0 0.9678 8633.0, 42428.0 -0.63
CC004/TauUncJ f 40704.0 0.0   1   0.0 0.0 40704.0, 40704.0 -0.25
CC004/TauUncJ m 134556.0 178209.0   2   126013.0 1.3244 8543.0, 260569.0 1.77
CC005/TauUncJ f 47036.0 28823.0   3 16641.0 0.6128 13773.0, 64626.0 -0.15
CC005/TauUncJ m 3105.0 929.1   2   657.0 0.2992 2448.0, 3762.0 -0.99
CC006/TauUncJ f 15892.0 17881.0   2   12644.0 1.1252 3248.0, 28536.0 -0.63
CC006/TauUncJ m 7408.0 8806.0   2   6227.0 1.1888 1181.0, 13635.0 -0.9
CC007/UncJ f 16988.0 0.0   1   0.0 0.0 16988.0, 16988.0 -0.62
CC008/GeniUncJ f 9357.0 0.0   1   0.0 0.0 9357.0, 9357.0 -0.74
CC008/GeniUncJ m 23081.0 0.0   1   0.0 0.0 23081.0, 23081.0 -0.57
CC009/UncJ f 19245.0 1700.0   2   1202.0 0.0883 18043.0, 20447.0 -0.58
CC009/UncJ m 5608.0 3430.0   2   2425.0 0.6116 3183.0, 8034.0 -0.94
CC011/UncJ f 38218.0 37363.0   3 21571.0 0.9776 13246.0, 81172.0 -0.29
CC011/UncJ m 25533.0 30442.0   3 17576.0 1.1923 7015.0, 60668.0 -0.52
CC012/GeniUncJ f 11580.0 5614.0   3 3241.0 0.4848 5803.0, 17016.0 -0.7
CC012/GeniUncJ m 50700.0 0.0   1   0.0 0.0 50700.0, 50700.0 0.01
CC013/GeniUncJ f 126200.0 17678.0   2   12500.0 0.1401 113700.0, 138701.0 1.08
CC013/GeniUncJ m 57422.0 18365.0   2   12986.0 0.3198 44436.0, 70408.0 0.15
CC015/UncJ f 189575.0 0.0   1   0.0 0.0 189575.0, 189575.0 2.07
CC015/UncJ m 152012.0 0.0   1   0.0 0.0 152012.0, 152012.0 2.13
CC016/GeniUncJ f 10802.0 8376.0   3 4836.0 0.7754 4953.0, 20398.0 -0.71
CC016/GeniUncJ m 10131.0 11764.0   4 5882.0 1.1612 3285.0, 27730.0 -0.84
CC017/UncJ f 4239.0 1885.0   2   1333.0 0.4447 2906.0, 5572.0 -0.82
CC017/UncJ m 15808.0 23632.0   3 13644.0 1.4949 707.0, 43042.0 -0.72
CC018/UncJ f 60537.0 63046.0   3 36400.0 1.0415 2108.0, 127360.0 0.06
CC018/UncJ m 6566.0 273.7   2   193.5 0.0417 6373.0, 6760.0 -0.92
CC019/TauUncJ f 19718.0 13536.0   4 6768.0 0.6865 1664.0, 34429.0 -0.58
CC019/TauUncJ m 35027.0 38478.0   4 19239.0 1.0985 9373.0, 91818.0 -0.32
CC023/GeniUncJ f 59906.0 82270.0   2   58174.0 1.3733 1732.0, 118080.0 0.05
CC023/GeniUncJ m 191779.0 0.0   1   0.0 0.0 191779.0, 191779.0 2.96
CC025/GeniUncJ f 124446.0 32599.0   3 18821.0 0.262 87633.0, 149657.0 1.06
CC025/GeniUncJ m 40040.0 38520.0   3 22239.0 0.962 6945.0, 82323.0 -0.21
CC026/GeniUncJ f 13182.0 0.0   1   0.0 0.0 13182.0, 13182.0 -0.68
CC026/GeniUncJ m 77283.0 102843.0   2   72721.0 1.3307 4562.0, 150004.0 0.57
CC027/GeniUncJ f 24328.0 24158.0   2   17082.0 0.993 7245.0, 41410.0 -0.5
CC027/GeniUncJ m 90813.0 91531.0   4 45765.0 1.0079 22874.0, 216790.0 0.85
CC028/GeniUncJ f 202845.0 234721.0   3 135516.0 1.1571 29024.0, 469849.0 2.28
CC028/GeniUncJ m 46555.0 29072.0   3 16785.0 0.6245 13019.0, 64635.0 -0.08
CC029/UncJ f 19590.0 0.0   1   0.0 0.0 19590.0, 19590.0 -0.58
CC029/UncJ m 23851.0 0.0   1   0.0 0.0 23851.0, 23851.0 -0.55
CC030/GeniUncJ f 8617.0 1652.0   2   1168.0 0.1917 7449.0, 9785.0 -0.75
CC030/GeniUncJ m 19878.0 24213.0   2   17122.0 1.2181 2757.0, 37000.0 -0.64
CC032/GeniUncJ f 44682.0 54319.0   2   38410.0 1.2157 6273.0, 83092.0 -0.19
CC033/GeniUncJ f 70882.0 21793.0   2   15410.0 0.3075 55472.0, 86292.0 0.22
CC033/GeniUncJ m 45970.0 38250.0   2   27047.0 0.8321 18923.0, 73017.0 -0.09
CC035/UncJ m 36171.0 0.0   1   0.0 0.0 36171.0, 36171.0 -0.3
CC036/UncJ f 28785.0 9728.0   3 5617.0 0.338 18110.0, 37151.0 -0.43
CC036/UncJ m 48692.0 39315.0   3 22698.0 0.8074 19120.0, 93307.0 -0.03
CC037/TauUncJ f 59126.0 20089.0   2   14205.0 0.3398 44921.0, 73331.0 0.04
CC037/TauUncJ m 26161.0 32366.0   3 18687.0 1.2372 6273.0, 63508.0 -0.51
CC040/TauUncJ f 27867.0 19192.0   3 11080.0 0.6887 5949.0, 41659.0 -0.45
CC040/TauUncJ m 66454.0 59233.0   3 34198.0 0.8913 1065.0, 116521.0 0.34
CC041/TauUncJ f 87912.0 77929.0   3 44992.0 0.8864 8010.0, 163706.0 0.49
CC041/TauUncJ m 176384.0 26920.0   2   19035.0 0.1526 157349.0, 195419.0 2.64
CC043/GeniUncJ f 55696.0 72114.0   2   50992.0 1.2948 4704.0, 106689.0 -0.01
CC043/GeniUncJ m 102312.0 141895.0   2   100335.0 1.3869 1977.0, 202647.0 1.09
CC044/UncJ f 1752.0 0.0   1   0.0 0.0 1752.0, 1752.0 -0.86
CC051/TauUncJ f 190963.0 0.0   1   0.0 0.0 190963.0, 190963.0 2.09
CC051/TauUncJ m 85201.0 0.0   1   0.0 0.0 85201.0, 85201.0 0.73
CC057/UncJ f 5931.0 5108.0   2   3612.0 0.8613 2319.0, 9543.0 -0.79
CC057/UncJ m 65240.0 56915.0   2   40245.0 0.8724 24995.0, 105485.0 0.31
CC059/TauUncJ f 113746.0 124675.0   4 62338.0 1.0961 21154.0, 294947.0 0.89
CC059/TauUncJ m 111038.0 114527.0   5 51218.0 1.0314 8084.0, 302450.0 1.27
CC060/UncJ f 2898.0 0.0   1   0.0 0.0 2898.0, 2898.0 -0.84
CC060/UncJ m 17627.0 0.0   1   0.0 0.0 17627.0, 17627.0 -0.68
CC061/GeniUncJ f 59861.0 46069.0   3 26598.0 0.7696 9643.0, 100167.0 0.05
CC061/GeniUncJ m 37318.0 32986.0   2   23324.0 0.8839 13994.0, 60643.0 -0.27
CC074/UncJ f 15794.0 0.0   1   0.0 0.0 15794.0, 15794.0 -0.64
CC074/UncJ m 20051.0 0.0   1   0.0 0.0 20051.0, 20051.0 -0.63
CC075/UncJ f 1466.0 979.3   2   692.5 0.6678 774.0, 2159.0 -0.86
CC075/UncJ m 8088.0 0.0   1   0.0 0.0 8088.0, 8088.0 -0.88
CC078/TauUncJ f 20217.0 13094.0   3 7560.0 0.6477 6307.0, 32305.0 -0.57
CC078/TauUncJ m 14029.0 10969.0   3 6333.0 0.7819 3831.0, 25634.0 -0.76
CC079/TauUncJ f 23490.0 0.0   1   0.0 0.0 23490.0, 23490.0 -0.52
CC079/TauUncJ m 13582.0 7507.0   2   5308.0 0.5528 8273.0, 18890.0 -0.77
CC080/TauUncJ f 127170.0 128593.0   2   90929.0 1.0112 36241.0, 218099.0 1.1
CC080/TauUncJ m 9916.0 0.0   1   0.0 0.0 9916.0, 9916.0 -0.85
CC084/TauJ f 72780.0 99715.0   2   70509.0 1.3701 2271.0, 143289.0 0.25
CC084/TauJ m 64219.0 55221.0   2   39047.0 0.8599 25172.0, 103266.0 0.29
NOD/ShiLtJ f 23838.0 37901.0   8 13400.0 1.59 2799.0, 114609.0 -0.51
NOD/ShiLtJ m 32787.0 37744.0   11 11380.0 1.1512 1973.0, 114619.0 -0.37
NZO/HlLtJ f 42939.0 63657.0   3 36753.0 1.4825 4747.0, 116425.0 -0.21
NZO/HlLtJ m 2474.0 958.8   2   678.0 0.3876 1796.0, 3152.0 -1.0
PWK/PhJ f 14936.0 14308.0   9 4769.0 0.9579 2340.0, 49489.0 -0.65
PWK/PhJ m 39288.0 51170.0   8 18091.0 1.3024 1896.0, 153359.0 -0.23
WSB/EiJ f 55182.0 73848.0   8 26109.0 1.3383 4095.0, 198877.0 -0.02
WSB/EiJ m 25641.0 21314.0   6 8701.0 0.8312 6081.0, 54991.0 -0.52


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 324831.9999999986 32258.9796307109 388459.4982370336 261204.5017629636
129S1/SvImJ m 76059.4999999997 27937.0958603604 131162.5298525215 20956.4701474778
A/J f 147092.333333333 22810.5432510344 192083.7688066754 102100.8978599905
A/J m 170429.2 24987.6981750777 219714.8482065759 121143.5517934241
C57BL/6J f 47137.6428571427 14933.0058701327 76591.4512401875 17683.834474098
C57BL/6J m 19802.0 16846.7026729103 53030.3772422851 -13426.3772422851
CAST/EiJ f 24791.7999999999 17668.9708258401 59642.0160620442 -10058.4160620444
CAST/EiJ m 62037.3749999999 19754.5099295195 101001.1010726429 23073.6489273569
CC001/UncJ f 103439.6666666665 32258.9796307111 167067.1649037018 39812.1684296311
CC001/UncJ m 40042.9999999997 39509.019859039 117970.4521452858 -37884.4521452863
CC002/UncJ f 10289.4999999986 27937.09586036 65392.5298525197 -44813.5298525225
CC002/UncJ m 9756.5000000002 27937.0958603607 64859.5298525227 -45346.5298525222
CC003/UncJ f 19924.9999999999 39509.0198590388 97852.4521452857 -58002.4521452858
CC003/UncJ m 20037.3333333327 32258.979630711 83664.8315703678 -43590.1649037023
CC005/TauUncJ f 47036.3333333346 32258.9796307111 110663.8315703699 -16591.1649037006
CC005/TauUncJ m 3105.0000000013 39509.019859039 81032.4521452874 -74822.4521452848
CC006/TauUncJ f 15891.9999999994 39509.0198590389 93819.4521452852 -62035.4521452865
CC006/TauUncJ m 7407.9999999992 39509.019859039 85335.4521452854 -70519.4521452869
CC009/UncJ f 19245.0000000004 39509.0198590391 97172.4521452867 -58682.4521452859
CC009/UncJ m 5608.5 39509.0198590389 83535.9521452858 -72318.9521452859
CC011/UncJ f 38218.3333333334 32258.9796307108 101845.8315703681 -25409.1649037013
CC011/UncJ m 25533.3333333338 32258.9796307111 89160.831570369 -38094.1649037014
CC013/GeniUncJ f 126200.5000000002 39509.019859039 204127.9521452862 48273.0478547142
CC013/GeniUncJ m 57421.9999999998 39509.019859039 135349.4521452859 -20505.4521452862
CC016/GeniUncJ f 10802.3333333337 32258.979630711 74429.8315703689 -52825.1649037015
CC016/GeniUncJ m 10131.2499999999 27937.0958603605 65234.2798525218 -44971.7798525221
CC017/UncJ f 4238.9999999998 39509.019859039 82166.4521452859 -73688.4521452863
CC017/UncJ m 15808.3333333329 32258.9796307109 79435.8315703679 -47819.1649037021
CC018/UncJ f 60536.9999999997 32258.979630711 124164.4982370347 -3090.4982370353
CC018/UncJ m 6566.4999999996 39509.019859039 84493.9521452857 -71360.9521452866
CC019/TauUncJ f 19717.9999999997 27937.0958603606 74821.029852522 -35385.0298525226
CC019/TauUncJ m 35027.0000000003 27937.0958603604 90130.0298525221 -20076.0298525215
CC025/GeniUncJ f 124445.9999999994 32258.9796307108 188073.4982370342 60818.5017629646
CC025/GeniUncJ m 40040.3333333324 32258.9796307111 103667.8315703676 -23587.1649037028
CC027/GeniUncJ f 24327.5000000005 39509.0198590391 102254.9521452868 -53599.9521452858
CC027/GeniUncJ m 90812.9999999999 27937.0958603604 145916.0298525218 35709.970147478
CC028/GeniUncJ f 202845.3333333338 32258.979630711 266472.831570369 139217.8350962987
CC028/GeniUncJ m 46554.6666666667 32258.9796307109 110182.1649037017 -17072.8315703682
CC030/GeniUncJ f 8616.9999999998 39509.0198590391 86544.452145286 -69310.4521452864
CC030/GeniUncJ m 19878.4999999997 39509.019859039 97805.9521452858 -58048.9521452864
CC033/GeniUncJ f 70882.0 39509.019859039 148809.452145286 -7045.452145286
CC033/GeniUncJ m 45969.9999999999 39509.019859039 123897.452145286 -31957.4521452862
CC036/UncJ f 28784.9999999999 32258.9796307109 92412.4982370348 -34842.4982370351
CC036/UncJ m 48691.6666666666 32258.979630711 112319.1649037017 -14935.8315703686
CC037/TauUncJ f 59125.9999999999 39509.0198590388 137053.4521452856 -18801.4521452859
CC037/TauUncJ m 26161.3333333332 32258.979630711 89788.8315703683 -37466.1649037019
CC040/TauUncJ f 27867.0000000002 32258.9796307109 91494.4982370352 -35760.4982370348
CC040/TauUncJ m 66453.6666666666 32258.979630711 130081.1649037018 2826.1684296314
CC041/TauUncJ f 87912.3333333333 32258.979630711 151539.8315703684 24284.8350962982
CC041/TauUncJ m 176383.9999999998 39509.019859039 254311.4521452858 98456.5478547138
CC043/GeniUncJ f 55696.5000000001 39509.0198590392 133623.9521452865 -22230.9521452863
CC043/GeniUncJ m 102312.0 39509.0198590389 180239.4521452858 24384.5478547141
CC057/UncJ f 5930.9999999996 39509.0198590392 83858.452145286 -71996.4521452869
CC057/UncJ m 65239.9999999996 39509.0198590389 143167.4521452855 -12687.4521452862
CC059/TauUncJ f 113746.2499999997 27937.0958603604 168849.2798525215 58643.2201474778
CC059/TauUncJ m 111037.7999999998 24987.6981750776 160323.4482065755 61752.1517934241
CC061/GeniUncJ f 59860.9999999999 32258.979630711 123488.498237035 -3766.4982370351
CC061/GeniUncJ m 37318.4999999999 39509.019859039 115245.952145286 -40608.9521452861
CC078/TauUncJ f 20216.6666666665 32258.9796307109 83844.1649037014 -43410.8315703685
CC078/TauUncJ m 14029.3333333332 32258.979630711 77656.8315703684 -49598.1649037019
CC084/TauJ f 72780.0 39509.0198590391 150707.4521452862 -5147.4521452862
CC084/TauJ m 64219.0 39509.019859039 142146.452145286 -13708.4521452859
NOD/ShiLtJ f 23837.7500000003 19754.5099295195 62801.4760726433 -15125.9760726428
NOD/ShiLtJ m 32787.3636363639 16846.7026729103 66015.740878649 -441.0136059211
NZO/HlLtJ f 42939.000000002 32258.9796307109 106566.4982370369 -20688.4982370329
NZO/HlLtJ m 2474.0000000001 39509.019859039 80401.4521452861 -75453.4521452859
PWK/PhJ f 14936.2222222221 18624.7305735736 51671.5754572367 -21799.1310127926
PWK/PhJ m 39287.4999999999 19754.5099295195 78251.2260726429 323.7739273568
WSB/EiJ f 55181.4999999999 19754.5099295195 94145.226072643 16217.7739273569
WSB/EiJ m 25640.6666666666 22810.5432510344 70632.1021400091 -19350.768806676


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 200445.7499999991 21337.3094128899 242531.384220098 158360.1157799003
A/J both 158760.7666666665 16916.7516348151 192127.308235633 125394.2250977
C57BL/6J both 33469.8214285714 11256.1766962284 55671.4648498405 11268.1780073023
CAST/EiJ both 43414.5874999999 13251.72811938 69552.249546533 17276.9254534668
CC001/UncJ both 71741.3333333331 25502.9626565061 122043.287395178 21439.3792714882
CC002/UncJ both 10022.9999999994 19754.5099295194 48986.7260726422 -28940.7260726434
CC003/UncJ both 19981.1666666663 25502.9626565059 70283.1207285108 -30320.7873951782
CC005/TauUncJ both 25070.6666666679 25502.9626565061 75372.6207285128 -25231.2873951769
CC006/TauUncJ both 11649.9999999993 27937.0958603604 66753.0298525212 -43453.0298525226
CC009/UncJ both 12426.7500000002 27937.0958603605 67529.7798525222 -42676.2798525219
CC011/UncJ both 31875.8333333336 22810.5432510343 76867.268806676 -13115.6021400088
CC013/GeniUncJ both 91811.25 27937.0958603605 146914.279852522 36708.2201474781
CC016/GeniUncJ both 10466.7916666668 21337.3094128899 52552.4258867658 -31618.8425534322
CC017/UncJ both 10023.6666666663 25502.962656506 60325.6207285111 -40278.2873951784
CC018/UncJ both 33551.7499999997 25502.9626565061 83853.7040618444 -16750.2040618451
CC019/TauUncJ both 27372.5 19754.5099295196 66336.2260726431 -11591.2260726432
CC025/GeniUncJ both 82243.1666666659 22810.5432510344 127234.6021400084 37251.7311933234
CC027/GeniUncJ both 57570.2500000002 24194.2347230333 105290.8736777766 9849.6263222237
CC028/GeniUncJ both 124700.0000000003 22810.5432510344 169691.4354733428 79708.5645266577
CC030/GeniUncJ both 14247.7499999998 27937.0958603605 69350.7798525218 -40855.2798525223
CC033/GeniUncJ both 58425.9999999999 27937.0958603604 113529.0298525219 3322.970147478
CC036/UncJ both 38738.3333333332 22810.5432510344 83729.7688066758 -6253.1021400093
CC037/TauUncJ both 42643.6666666666 25502.9626565059 92945.6207285111 -7658.287395178
CC040/TauUncJ both 47160.3333333334 22810.5432510345 92151.7688066761 2168.8978599907
CC041/TauUncJ both 132148.1666666666 25502.962656506 182450.1207285113 81846.2126048218
CC043/GeniUncJ both 79004.25 27937.0958603605 134107.2798525221 23901.220147478
CC057/UncJ both 35585.4999999996 27937.0958603605 90688.5298525217 -19517.5298525225
CC059/TauUncJ both 112392.0249999997 18740.7736313082 149356.2611549315 75427.788845068
CC061/GeniUncJ both 48589.7499999999 25502.962656506 98891.7040618447 -1712.2040618448
CC078/TauUncJ both 17122.9999999999 22810.5432510344 62114.4354733424 -27868.4354733427
CC084/TauJ both 68499.5 27937.0958603605 123602.529852522 13396.470147478
NOD/ShiLtJ both 28312.5568181821 12981.2562325929 53916.7410642169 2708.3725721473
NZO/HlLtJ both 22706.500000001 25502.962656506 73008.4540618458 -27595.4540618437
PWK/PhJ both 27111.861111111 13574.9885036203 53887.120805301 336.6014169209
WSB/EiJ both 40411.0833333333 15087.75617813 70170.1206809018 10652.0459857647




GWAS analysis not available: Strain panel must be either Inbred, HMDP, BXD, BXH, CXB, or AXB/BXA