Project measure / variable:   CSNA03   omit_cc_rev_JAX

ID, description, units MPD:110494   omit_cc_rev_JAX   total number of omissions (successful response in central nose poke hole, but no response in flanking hole within 30 s) (reversal learning assay), CC   [n]  reversal  
Data set, strains CSNA03   CC w/par   52 strains     sex: both     age:
Procedure operant conditioning chamber
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  STRAIN COMPARISON PLOT
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CSNA03 - total number of omissions (successful response in central nose poke hole, but no response in flanking hole within 30 s) (reversal learning assay), CC reversal



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested51 strains49 strains
Mean of the strain means27.491   n 35.647   n
Median of the strain means17.0   n 17.875   n
SD of the strain means± 38.198 ± 73.09
Coefficient of variation (CV)1.3895 2.0503
Min–max range of strain means2.0   –   214.0   n 1.0   –   509.0   n
Mean sample size per strain2.9   mice 2.9   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 700.9612 700.9612 0.9472 0.3317
strain 33 37213.1456 1127.6711 1.5238 0.0438
sex:strain 33 24978.0842 756.9116 1.0228 0.4419
Residuals 183 135427.9365 740.0434


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page:
Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 25.0 19.079   3 11.015 0.7632 3.0, 37.0 -0.07
129S1/SvImJ m 36.75 30.642   4 15.321 0.8338 8.0, 73.0 0.02
A/J f 29.0 28.362   6 11.579 0.978 9.0, 81.0 0.04
A/J m 52.8 53.31   5 23.84 1.0096 2.0, 132.0 0.23
C57BL/6J f 19.786 20.748   14 5.5452 1.0486 1.0, 72.0 -0.2
C57BL/6J m 35.0 31.875   11 9.6106 0.9107 5.0, 96.0 -0.01
CAST/EiJ f 7.4 5.2957   10 1.6746 0.7156 1.0, 16.0 -0.53
CAST/EiJ m 17.875 25.38   8 8.973 1.4198 3.0, 74.0 -0.24
CC001/UncJ f 49.667 6.4291   3 3.7118 0.1294 45.0, 57.0 0.58
CC001/UncJ m 10.0 2.8284   2   2.0 0.2828 8.0, 12.0 -0.35
CC002/UncJ f 53.25 36.537   4 18.268 0.6861 15.0, 103.0 0.67
CC002/UncJ m 27.75 26.349   4 13.174 0.9495 1.0, 64.0 -0.11
CC003/UncJ f 16.0 7.0711   2   5.0 0.4419 11.0, 21.0 -0.3
CC003/UncJ m 10.0 3.6056   3 2.0817 0.3606 6.0, 13.0 -0.35
CC004/TauUncJ f 2.0 0.0   1   0.0 0.0 2.0, 2.0 -0.67
CC004/TauUncJ m 86.0 50.91   2   36.0 0.592 50.0, 122.0 0.69
CC005/TauUncJ f 10.0 12.728   2   9.0 1.2728 1.0, 19.0 -0.46
CC005/TauUncJ m 9.0 9.8995   2   7.0 1.0999 2.0, 16.0 -0.36
CC006/TauUncJ f 22.5 28.991   2   20.5 1.2885 2.0, 43.0 -0.13
CC006/TauUncJ m 12.0 4.2426   2   3.0 0.3536 9.0, 15.0 -0.32
CC007/UncJ f 19.0 0.0   1   0.0 0.0 19.0, 19.0 -0.22
CC008/GeniUncJ f 18.0 0.0   1   0.0 0.0 18.0, 18.0 -0.25
CC008/GeniUncJ m 10.0 0.0   1   0.0 0.0 10.0, 10.0 -0.35
CC009/UncJ f 27.0 8.4853   2   6.0 0.3143 21.0, 33.0 -0.01
CC009/UncJ m 18.0 4.2426   2   3.0 0.2357 15.0, 21.0 -0.24
CC011/UncJ f 8.5 0.70711   2   0.5 0.0832 8.0, 9.0 -0.5
CC011/UncJ m 47.667 58.86   3 33.982 1.2348 6.0, 115.0 0.16
CC012/GeniUncJ f 24.333 10.066   3 5.8119 0.4137 15.0, 35.0 -0.08
CC012/GeniUncJ m 4.0 0.0   1   0.0 0.0 4.0, 4.0 -0.43
CC013/GeniUncJ f 3.5 0.70711   2   0.5 0.202 3.0, 4.0 -0.63
CC013/GeniUncJ m 35.0 11.314   2   8.0 0.3232 27.0, 43.0 -0.01
CC015/UncJ f 9.0 0.0   1   0.0 0.0 9.0, 9.0 -0.48
CC015/UncJ m 14.0 0.0   1   0.0 0.0 14.0, 14.0 -0.3
CC016/GeniUncJ f 23.667 26.388   3 15.235 1.115 6.0, 54.0 -0.1
CC016/GeniUncJ m 10.667 3.0551   3 1.7638 0.2864 8.0, 14.0 -0.34
CC017/UncJ f 17.5 21.92   2   15.5 1.2526 2.0, 33.0 -0.26
CC017/UncJ m 92.0 131.6   3 75.96 1.4301 2.0, 243.0 0.77
CC018/UncJ f 31.667 16.442   3 9.4927 0.5192 13.0, 44.0 0.11
CC018/UncJ m 9.5 7.7782   2   5.5 0.8188 4.0, 15.0 -0.36
CC019/TauUncJ f 7.75 6.8981   4 3.449 0.8901 3.0, 18.0 -0.52
CC019/TauUncJ m 7.25 4.7871   4 2.3936 0.6603 1.0, 11.0 -0.39
CC023/GeniUncJ f 16.5 21.92   2   15.5 1.3285 1.0, 32.0 -0.29
CC023/GeniUncJ m 1.0 0.0   1   0.0 0.0 1.0, 1.0 -0.47
CC025/GeniUncJ f 10.0 7.5498   3 4.3589 0.755 2.0, 17.0 -0.46
CC025/GeniUncJ m 17.667 4.9329   3 2.848 0.2792 12.0, 21.0 -0.25
CC026/GeniUncJ f 214.0 0.0   1   0.0 0.0 214.0, 214.0 4.88
CC026/GeniUncJ m 52.5 0.70711   2   0.5 0.0135 52.0, 53.0 0.23
CC027/GeniUncJ f 70.0 53.74   2   38.0 0.7677 32.0, 108.0 1.11
CC027/GeniUncJ m 22.25 17.193   4 8.5963 0.7727 13.0, 48.0 -0.18
CC028/GeniUncJ f 26.667 44.456   3 25.667 1.6671 1.0, 78.0 -0.02
CC028/GeniUncJ m 7.3333 3.0551   3 1.7638 0.4166 4.0, 10.0 -0.39
CC029/UncJ f 5.0 0.0   1   0.0 0.0 5.0, 5.0 -0.59
CC029/UncJ m 3.0 0.0   1   0.0 0.0 3.0, 3.0 -0.45
CC030/GeniUncJ f 3.0 1.4142   2   1.0 0.4714 2.0, 4.0 -0.64
CC030/GeniUncJ m 14.0 0.0   1   0.0 0.0 14.0, 14.0 -0.3
CC032/GeniUncJ f 17.0 15.556   2   11.0 0.9151 6.0, 28.0 -0.27
CC033/GeniUncJ f 14.5 7.7782   2   5.5 0.5364 9.0, 20.0 -0.34
CC033/GeniUncJ m 2.5 0.70711   2   0.5 0.2828 2.0, 3.0 -0.45
CC035/UncJ m 36.0 0.0   1   0.0 0.0 36.0, 36.0 0.0
CC036/UncJ f 4.3333 0.57735   3 0.33333 0.1332 4.0, 5.0 -0.61
CC036/UncJ m 7.3333 6.5064   3 3.7565 0.8872 1.0, 14.0 -0.39
CC037/TauUncJ f 21.5 2.1213   2   1.5 0.0987 20.0, 23.0 -0.16
CC037/TauUncJ m 42.333 25.482   3 14.712 0.6019 13.0, 59.0 0.09
CC040/TauUncJ f 39.0 15.556   2   11.0 0.3989 28.0, 50.0 0.3
CC040/TauUncJ m 42.667 26.727   3 15.431 0.6264 12.0, 61.0 0.1
CC041/TauUncJ f 12.0 6.5574   3 3.7859 0.5465 5.0, 18.0 -0.41
CC041/TauUncJ m 12.5 9.1924   2   6.5 0.7354 6.0, 19.0 -0.32
CC043/GeniUncJ f 16.0 16.971   2   12.0 1.0607 4.0, 28.0 -0.3
CC043/GeniUncJ m 34.0 42.426   2   30.0 1.2478 4.0, 64.0 -0.02
CC044/UncJ f 31.0 0.0   1   0.0 0.0 31.0, 31.0 0.09
CC051/TauUncJ f 7.0 0.0   1   0.0 0.0 7.0, 7.0 -0.54
CC051/TauUncJ m 58.0 0.0   1   0.0 0.0 58.0, 58.0 0.31
CC057/UncJ f 19.0 15.556   2   11.0 0.8188 8.0, 30.0 -0.22
CC057/UncJ m 4.5 0.70711   2   0.5 0.1571 4.0, 5.0 -0.43
CC059/TauUncJ f 8.25 6.8496   4 3.4248 0.8303 2.0, 16.0 -0.5
CC059/TauUncJ m 14.2 14.481   5 6.4761 1.0198 1.0, 38.0 -0.29
CC060/UncJ f 184.0 0.0   1   0.0 0.0 184.0, 184.0 4.1
CC060/UncJ m 1.0 0.0   1   0.0 0.0 1.0, 1.0 -0.47
CC061/GeniUncJ f 30.667 46.231   3 26.692 1.5075 2.0, 84.0 0.08
CC061/GeniUncJ m 11.0 4.2426   2   3.0 0.3857 8.0, 14.0 -0.34
CC074/UncJ f 12.0 0.0   1   0.0 0.0 12.0, 12.0 -0.41
CC074/UncJ m 509.0 0.0   1   0.0 0.0 509.0, 509.0 6.48
CC075/UncJ f 63.5 14.849   2   10.5 0.2338 53.0, 74.0 0.94
CC075/UncJ m 30.0 0.0   1   0.0 0.0 30.0, 30.0 -0.08
CC078/TauUncJ f 9.6667 1.1547   3 0.66667 0.1195 9.0, 11.0 -0.47
CC078/TauUncJ m 29.667 39.374   3 22.733 1.3272 4.0, 75.0 -0.08
CC079/TauUncJ f 15.0 0.0   1   0.0 0.0 15.0, 15.0 -0.33
CC079/TauUncJ m 43.5 58.69   2   41.5 1.3492 2.0, 85.0 0.11
CC080/TauUncJ f 13.0 1.4142   2   1.0 0.1088 12.0, 14.0 -0.38
CC080/TauUncJ m 111.0 0.0   1   0.0 0.0 111.0, 111.0 1.03
CC084/TauJ f 44.0 31.113   2   22.0 0.7071 22.0, 66.0 0.43
CC084/TauJ m 2.5 2.1213   2   1.5 0.8485 1.0, 4.0 -0.45
NOD/ShiLtJ f 10.286 6.9454   7 2.6251 0.6752 2.0, 20.0 -0.45
NOD/ShiLtJ m 18.091 13.479   11 4.0642 0.7451 1.0, 40.0 -0.24
NZO/HlLtJ f 13.667 5.0332   3 2.9059 0.3683 9.0, 19.0 -0.36
NZO/HlLtJ m 22.0 21.213   2   15.0 0.9642 7.0, 37.0 -0.19
PWK/PhJ f 9.875 8.6592   8 3.0615 0.8769 2.0, 29.0 -0.46
PWK/PhJ m 10.5 9.5618   8 3.3806 0.9107 1.0, 30.0 -0.34
WSB/EiJ f 37.125 34.836   8 12.316 0.9383 2.0, 95.0 0.25
WSB/EiJ m 41.4 47.395   5 21.196 1.1448 2.0, 121.0 0.08


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 25.0 15.7060855371 55.9882939049 -5.9882939049
129S1/SvImJ m 36.75 13.6018690692 63.5866497416 9.9133502584
A/J f 29.0 11.1058795892 50.9120327576 7.0879672424
A/J m 52.8 12.1658815439 76.8034292442 28.7965707558
C57BL/6J f 19.7857142857 7.2705048395 34.1305069631 5.4409216083
C57BL/6J m 35.0 8.2022356636 51.1831086951 18.8168913049
CAST/EiJ f 7.4 8.6025773388 24.3729875903 -9.5729875903
CAST/EiJ m 17.875 9.6179738556 36.8513770166 -1.1013770166
CC001/UncJ f 49.6666666667 15.7060855371 80.6549605716 18.6783727618
CC001/UncJ m 10.0 19.2359477112 47.9527540332 -27.9527540332
CC002/UncJ f 53.25 13.6018690692 80.0866497416 26.4133502584
CC002/UncJ m 27.75 13.6018690692 54.5866497416 0.9133502584
CC003/UncJ f 16.0 19.2359477112 53.9527540332 -21.9527540332
CC003/UncJ m 10.0 15.7060855371 40.9882939049 -20.9882939049
CC005/TauUncJ f 10.0 19.2359477112 47.9527540332 -27.9527540332
CC005/TauUncJ m 9.0 19.2359477112 46.9527540332 -28.9527540332
CC006/TauUncJ f 22.5 19.2359477112 60.4527540332 -15.4527540332
CC006/TauUncJ m 12.0 19.2359477112 49.9527540332 -25.9527540332
CC009/UncJ f 27.0 19.2359477112 64.9527540332 -10.9527540332
CC009/UncJ m 18.0 19.2359477112 55.9527540332 -19.9527540332
CC011/UncJ f 8.5 19.2359477112 46.4527540332 -29.4527540332
CC011/UncJ m 47.6666666667 15.7060855371 78.6549605716 16.6783727618
CC013/GeniUncJ f 3.5 19.2359477112 41.4527540332 -34.4527540332
CC013/GeniUncJ m 35.0 19.2359477112 72.9527540332 -2.9527540332
CC016/GeniUncJ f 23.6666666667 15.7060855371 54.6549605716 -7.3216272382
CC016/GeniUncJ m 10.6666666667 15.7060855371 41.6549605716 -20.3216272382
CC017/UncJ f 17.5 19.2359477112 55.4527540332 -20.4527540332
CC017/UncJ m 92.0 15.7060855371 122.9882939049 61.0117060951
CC018/UncJ f 31.6666666667 15.7060855371 62.6549605716 0.6783727618
CC018/UncJ m 9.5 19.2359477112 47.4527540332 -28.4527540332
CC019/TauUncJ f 7.75 13.6018690692 34.5866497416 -19.0866497416
CC019/TauUncJ m 7.25 13.6018690692 34.0866497416 -19.5866497416
CC025/GeniUncJ f 10.0 15.7060855371 40.9882939049 -20.9882939049
CC025/GeniUncJ m 17.6666666667 15.7060855371 48.6549605716 -13.3216272382
CC027/GeniUncJ f 70.0 19.2359477112 107.9527540332 32.0472459668
CC027/GeniUncJ m 22.25 13.6018690692 49.0866497416 -4.5866497416
CC028/GeniUncJ f 26.6666666667 15.7060855371 57.6549605716 -4.3216272382
CC028/GeniUncJ m 7.3333333333 15.7060855371 38.3216272382 -23.6549605716
CC033/GeniUncJ f 14.5 19.2359477112 52.4527540332 -23.4527540332
CC033/GeniUncJ m 2.5 19.2359477112 40.4527540332 -35.4527540332
CC036/UncJ f 4.3333333333 15.7060855371 35.3216272382 -26.6549605716
CC036/UncJ m 7.3333333333 15.7060855371 38.3216272382 -23.6549605716
CC037/TauUncJ f 21.5 19.2359477112 59.4527540332 -16.4527540332
CC037/TauUncJ m 42.3333333333 15.7060855371 73.3216272382 11.3450394284
CC040/TauUncJ f 39.0 19.2359477112 76.9527540332 1.0472459668
CC040/TauUncJ m 42.6666666667 15.7060855371 73.6549605716 11.6783727618
CC041/TauUncJ f 12.0 15.7060855371 42.9882939049 -18.9882939049
CC041/TauUncJ m 12.5 19.2359477112 50.4527540332 -25.4527540332
CC043/GeniUncJ f 16.0 19.2359477112 53.9527540332 -21.9527540332
CC043/GeniUncJ m 34.0 19.2359477112 71.9527540332 -3.9527540332
CC057/UncJ f 19.0 19.2359477112 56.9527540332 -18.9527540332
CC057/UncJ m 4.5 19.2359477112 42.4527540332 -33.4527540332
CC059/TauUncJ f 8.25 13.6018690692 35.0866497416 -18.5866497416
CC059/TauUncJ m 14.2 12.1658815439 38.2034292442 -9.8034292442
CC061/GeniUncJ f 30.6666666667 15.7060855371 61.6549605716 -0.3216272382
CC061/GeniUncJ m 11.0 19.2359477112 48.9527540332 -26.9527540332
CC078/TauUncJ f 9.6666666667 15.7060855371 40.6549605716 -21.3216272382
CC078/TauUncJ m 29.6666666667 15.7060855371 60.6549605716 -1.3216272382
CC084/TauJ f 44.0 19.2359477112 81.9527540332 6.0472459668
CC084/TauJ m 2.5 19.2359477112 40.4527540332 -35.4527540332
NOD/ShiLtJ f 10.2857142857 10.2820465493 30.5723146395 -10.0008860681
NOD/ShiLtJ m 18.0909090909 8.2022356636 34.274017786 1.9078003958
NZO/HlLtJ f 13.6666666667 15.7060855371 44.6549605716 -17.3216272382
NZO/HlLtJ m 22.0 19.2359477112 59.9527540332 -15.9527540332
PWK/PhJ f 9.875 9.6179738556 28.8513770166 -9.1013770166
PWK/PhJ m 10.5 9.6179738556 29.4763770166 -8.4763770166
WSB/EiJ f 37.125 9.6179738556 56.1013770166 18.1486229834
WSB/EiJ m 41.4 12.1658815439 65.4034292442 17.3965707558


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 30.875 10.3885991004 51.3718298066 10.3781701934
A/J both 40.9 8.2363407407 57.1503984186 24.6496015814
C57BL/6J both 27.3928571429 5.4803492248 38.2056514625 16.5800628232
CAST/EiJ both 12.6375 6.4519330041 25.3672406927 -0.0922406927
CC001/UncJ both 29.8333333333 12.4167508557 54.3317307189 5.3349359478
CC002/UncJ both 40.5 9.6179738556 59.4763770166 21.5236229834
CC003/UncJ both 13.0 12.4167508557 37.4983973856 -11.4983973856
CC005/TauUncJ both 9.5 13.6018690692 36.3366497416 -17.3366497416
CC006/TauUncJ both 17.25 13.6018690692 44.0866497416 -9.5866497416
CC009/UncJ both 22.5 13.6018690692 49.3366497416 -4.3366497416
CC011/UncJ both 28.0833333333 12.4167508557 52.5817307189 3.5849359478
CC013/GeniUncJ both 19.25 13.6018690692 46.0866497416 -7.5866497416
CC016/GeniUncJ both 17.1666666667 11.1058795892 39.0786994242 -4.7453660909
CC017/UncJ both 54.75 12.4167508557 79.2483973856 30.2516026144
CC018/UncJ both 20.5833333333 12.4167508557 45.0817307189 -3.9150640522
CC019/TauUncJ both 7.5 9.6179738556 26.4763770166 -11.4763770166
CC025/GeniUncJ both 13.8333333333 11.1058795892 35.7453660909 -8.0786994242
CC027/GeniUncJ both 46.125 11.7795641528 69.3662204287 22.8837795713
CC028/GeniUncJ both 17.0 11.1058795892 38.9120327576 -4.9120327576
CC033/GeniUncJ both 8.5 13.6018690692 35.3366497416 -18.3366497416
CC036/UncJ both 5.8333333333 11.1058795892 27.7453660909 -16.0786994242
CC037/TauUncJ both 31.9166666667 12.4167508557 56.4150640522 7.4182692811
CC040/TauUncJ both 40.8333333333 12.4167508557 65.3317307189 16.3349359478
CC041/TauUncJ both 12.25 12.4167508557 36.7483973856 -12.2483973856
CC043/GeniUncJ both 25.0 13.6018690692 51.8366497416 -1.8366497416
CC057/UncJ both 11.75 13.6018690692 38.5866497416 -15.0866497416
CC059/TauUncJ both 11.225 9.1244111579 29.2275719332 -6.7775719332
CC061/GeniUncJ both 20.8333333333 12.4167508557 45.3317307189 -3.6650640522
CC078/TauUncJ both 19.6666666667 11.1058795892 41.5786994242 -2.2453660909
CC084/TauJ both 23.25 13.6018690692 50.0866497416 -3.5866497416
NOD/ShiLtJ both 14.1883116883 6.5764190698 27.1636648719 1.2129585047
NZO/HlLtJ both 17.8333333333 12.4167508557 42.3317307189 -6.6650640522
PWK/PhJ both 10.1875 6.8009345346 23.6058248708 -3.2308248708
WSB/EiJ both 39.2625 7.754258424 54.5617442637 23.9632557363




GWAS analysis not available: Strain panel must be either Inbred, HMDP, BXD, BXH, CXB, or AXB/BXA