Project measure / variable:   CSNA03   days_criteria_cc_rev_JAX

ID, description, units MPD:110488   days_criteria_cc_rev_JAX   number of days to meet criteria, (reversal learning assay), CC   [n]  reversal  
Data set, strains CSNA03   CC w/par   52 strains     sex: both     age:
Procedure operant conditioning chamber
Ontology mappings

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  STRAIN COMPARISON PLOT
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CSNA03 - number of days to meet criteria, (reversal learning assay), CC reversal



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested51 strains49 strains
Mean of the strain means4.7674   n 5.9856   n
Median of the strain means3.8889   n 3.5   n
SD of the strain means± 4.0242 ± 6.8535
Coefficient of variation (CV)0.8441 1.145
Min–max range of strain means1.0   –   27.0   n 1.0   –   34.0   n
Mean sample size per strain3.0   mice 3.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 21.6146 21.6146 1.2184 0.2711
strain 34 727.6947 21.4028 1.2065 0.2153
sex:strain 34 591.0873 17.3849 0.98 0.506
Residuals 192 3406.1263 17.7402


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page:
Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 5.3333 3.7859   3 2.1858 0.7099 1.0, 8.0 0.14
129S1/SvImJ m 5.5 4.3589   4 2.1794 0.7925 2.0, 11.0 -0.07
A/J f 6.0 5.1769   6 2.1134 0.8628 2.0, 16.0 0.31
A/J m 8.8 8.1056   5 3.6249 0.9211 2.0, 19.0 0.41
C57BL/6J f 4.2143 3.534   14 0.9445 0.8386 1.0, 15.0 -0.14
C57BL/6J m 5.5455 4.0339   11 1.2163 0.7274 2.0, 14.0 -0.06
CAST/EiJ f 2.7 1.2517   10 0.39581 0.4636 1.0, 5.0 -0.51
CAST/EiJ m 4.25 4.8624   8 1.7191 1.1441 1.0, 15.0 -0.25
CC001/UncJ f 7.0 1.0   3 0.57735 0.1429 6.0, 8.0 0.55
CC001/UncJ m 2.0 1.4142   2   1.0 0.7071 1.0, 3.0 -0.58
CC002/UncJ f 7.5 5.0662   4 2.5331 0.6755 4.0, 15.0 0.68
CC002/UncJ m 3.5 1.0   4 0.5 0.2857 2.0, 4.0 -0.36
CC003/UncJ f 7.5 4.9497   2   3.5 0.66 4.0, 11.0 0.68
CC003/UncJ m 2.6667 1.1547   3 0.66667 0.433 2.0, 4.0 -0.48
CC004/TauUncJ f 2.0 0.0   1   0.0 0.0 2.0, 2.0 -0.69
CC004/TauUncJ m 12.5 0.70711   2   0.5 0.0566 12.0, 13.0 0.95
CC005/TauUncJ f 2.0 1.7321   3 1.0 0.866 1.0, 4.0 -0.69
CC005/TauUncJ m 1.5 0.70711   2   0.5 0.4714 1.0, 2.0 -0.65
CC006/TauUncJ f 2.0 1.4142   2   1.0 0.7071 1.0, 3.0 -0.69
CC006/TauUncJ m 2.0 0.0   2   0.0 0.0 2.0, 2.0 -0.58
CC007/UncJ f 3.0 0.0   1   0.0 0.0 3.0, 3.0 -0.44
CC008/GeniUncJ f 1.0 0.0   1   0.0 0.0 1.0, 1.0 -0.94
CC008/GeniUncJ m 2.0 0.0   1   0.0 0.0 2.0, 2.0 -0.58
CC009/UncJ f 3.5 0.70711   2   0.5 0.202 3.0, 4.0 -0.31
CC009/UncJ m 2.0 0.0   2   0.0 0.0 2.0, 2.0 -0.58
CC011/UncJ f 2.0 1.7321   3 1.0 0.866 1.0, 4.0 -0.69
CC011/UncJ m 7.6667 8.9629   3 5.1747 1.1691 2.0, 18.0 0.25
CC012/GeniUncJ f 3.6667 1.1547   3 0.66667 0.3149 3.0, 5.0 -0.27
CC012/GeniUncJ m 2.0 0.0   1   0.0 0.0 2.0, 2.0 -0.58
CC013/GeniUncJ f 2.0 0.0   2   0.0 0.0 2.0, 2.0 -0.69
CC013/GeniUncJ m 9.0 5.6569   2   4.0 0.6285 5.0, 13.0 0.44
CC015/UncJ f 2.0 0.0   1   0.0 0.0 2.0, 2.0 -0.69
CC015/UncJ m 2.0 0.0   1   0.0 0.0 2.0, 2.0 -0.58
CC016/GeniUncJ f 5.0 5.1962   3 3.0 1.0392 2.0, 11.0 0.06
CC016/GeniUncJ m 1.75 0.95743   4 0.47871 0.5471 1.0, 3.0 -0.62
CC017/UncJ f 3.0 2.8284   2   2.0 0.9428 1.0, 5.0 -0.44
CC017/UncJ m 10.667 14.224   3 8.2125 1.3335 1.0, 27.0 0.68
CC018/UncJ f 6.0 1.7321   3 1.0 0.2887 5.0, 8.0 0.31
CC018/UncJ m 2.0 0.0   2   0.0 0.0 2.0, 2.0 -0.58
CC019/TauUncJ f 2.5 1.291   4 0.6455 0.5164 1.0, 4.0 -0.56
CC019/TauUncJ m 3.0 1.8257   4 0.91287 0.6086 1.0, 5.0 -0.44
CC023/GeniUncJ f 2.0 0.0   2   0.0 0.0 2.0, 2.0 -0.69
CC023/GeniUncJ m 2.0 0.0   1   0.0 0.0 2.0, 2.0 -0.58
CC025/GeniUncJ f 5.3333 3.7859   3 2.1858 0.7099 1.0, 8.0 0.14
CC025/GeniUncJ m 5.6667 3.7859   3 2.1858 0.6681 3.0, 10.0 -0.05
CC026/GeniUncJ f 27.0 0.0   1   0.0 0.0 27.0, 27.0 5.52
CC026/GeniUncJ m 7.5 7.7782   2   5.5 1.0371 2.0, 13.0 0.22
CC027/GeniUncJ f 12.0 12.728   2   9.0 1.0607 3.0, 21.0 1.8
CC027/GeniUncJ m 4.5 2.5166   4 1.2583 0.5592 2.0, 8.0 -0.22
CC028/GeniUncJ f 5.3333 6.6583   3 3.8442 1.2484 1.0, 13.0 0.14
CC028/GeniUncJ m 3.0 1.7321   3 1.0 0.5774 2.0, 5.0 -0.44
CC029/UncJ f 2.0 0.0   1   0.0 0.0 2.0, 2.0 -0.69
CC029/UncJ m 1.0 0.0   1   0.0 0.0 1.0, 1.0 -0.73
CC030/GeniUncJ f 1.5 0.70711   2   0.5 0.4714 1.0, 2.0 -0.81
CC030/GeniUncJ m 3.0 1.4142   2   1.0 0.4714 2.0, 4.0 -0.44
CC032/GeniUncJ f 2.5 0.70711   2   0.5 0.2828 2.0, 3.0 -0.56
CC033/GeniUncJ f 4.0 2.8284   2   2.0 0.7071 2.0, 6.0 -0.19
CC033/GeniUncJ m 1.5 0.70711   2   0.5 0.4714 1.0, 2.0 -0.65
CC035/UncJ m 6.0 0.0   1   0.0 0.0 6.0, 6.0 0.0
CC036/UncJ f 1.3333 0.57735   3 0.33333 0.433 1.0, 2.0 -0.85
CC036/UncJ m 2.0 0.0   3 0.0 0.0 2.0, 2.0 -0.58
CC037/TauUncJ f 4.5 0.70711   2   0.5 0.1571 4.0, 5.0 -0.07
CC037/TauUncJ m 3.6667 2.5166   3 1.453 0.6863 1.0, 6.0 -0.34
CC040/TauUncJ f 5.3333 4.0415   3 2.3333 0.7578 1.0, 9.0 0.14
CC040/TauUncJ m 10.0 4.5826   3 2.6458 0.4583 6.0, 15.0 0.59
CC041/TauUncJ f 4.3333 2.0817   3 1.2019 0.4804 2.0, 6.0 -0.11
CC041/TauUncJ m 6.5 3.5355   2   2.5 0.5439 4.0, 9.0 0.08
CC043/GeniUncJ f 3.0 2.8284   2   2.0 0.9428 1.0, 5.0 -0.44
CC043/GeniUncJ m 10.5 10.607   2   7.5 1.0102 3.0, 18.0 0.66
CC044/UncJ f 4.0 0.0   1   0.0 0.0 4.0, 4.0 -0.19
CC051/TauUncJ f 8.0 0.0   1   0.0 0.0 8.0, 8.0 0.8
CC051/TauUncJ m 24.0 0.0   1   0.0 0.0 24.0, 24.0 2.63
CC057/UncJ f 3.5 2.1213   2   1.5 0.6061 2.0, 5.0 -0.31
CC057/UncJ m 3.0 1.4142   2   1.0 0.4714 2.0, 4.0 -0.44
CC059/TauUncJ f 6.25 3.594   4 1.797 0.575 3.0, 11.0 0.37
CC059/TauUncJ m 9.6 7.9561   5 3.5581 0.8288 3.0, 22.0 0.53
CC060/UncJ f 11.0 0.0   1   0.0 0.0 11.0, 11.0 1.55
CC060/UncJ m 1.0 0.0   1   0.0 0.0 1.0, 1.0 -0.73
CC061/GeniUncJ f 3.3333 1.5275   3 0.88192 0.4583 2.0, 5.0 -0.36
CC061/GeniUncJ m 6.5 3.5355   2   2.5 0.5439 4.0, 9.0 0.08
CC074/UncJ f 2.0 0.0   1   0.0 0.0 2.0, 2.0 -0.69
CC074/UncJ m 34.0 0.0   1   0.0 0.0 34.0, 34.0 4.09
CC075/UncJ f 7.0 5.6569   2   4.0 0.8081 3.0, 11.0 0.55
CC075/UncJ m 2.0 0.0   1   0.0 0.0 2.0, 2.0 -0.58
CC078/TauUncJ f 2.3333 0.57735   3 0.33333 0.2474 2.0, 3.0 -0.6
CC078/TauUncJ m 3.6667 2.8868   3 1.6667 0.7873 2.0, 7.0 -0.34
CC079/TauUncJ f 4.0 0.0   1   0.0 0.0 4.0, 4.0 -0.19
CC079/TauUncJ m 2.0 1.4142   2   1.0 0.7071 1.0, 3.0 -0.58
CC080/TauUncJ f 9.0 7.0711   2   5.0 0.7857 4.0, 14.0 1.05
CC080/TauUncJ m 31.0 0.0   1   0.0 0.0 31.0, 31.0 3.65
CC084/TauJ f 7.5 6.364   2   4.5 0.8485 3.0, 12.0 0.68
CC084/TauJ m 2.0 0.0   2   0.0 0.0 2.0, 2.0 -0.58
NOD/ShiLtJ f 2.125 0.99103   8 0.35038 0.4664 1.0, 4.0 -0.66
NOD/ShiLtJ m 3.1818 2.3587   11 0.71119 0.7413 1.0, 8.0 -0.41
NZO/HlLtJ f 3.0 1.7321   3 1.0 0.5774 2.0, 5.0 -0.44
NZO/HlLtJ m 3.5 3.5355   2   2.5 1.0102 1.0, 6.0 -0.36
PWK/PhJ f 3.8889 4.1966   9 1.3989 1.0791 2.0, 15.0 -0.22
PWK/PhJ m 5.0 3.0706   8 1.0856 0.6141 1.0, 9.0 -0.14
WSB/EiJ f 6.125 4.5493   8 1.6084 0.7427 2.0, 15.0 0.34
WSB/EiJ m 5.6667 6.7725   6 2.7649 1.1951 1.0, 19.0 -0.05


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 5.3333333333 2.4317511747 10.1297108181 0.5369558486
129S1/SvImJ m 5.5 2.105958293 9.6537847479 1.3462152521
A/J f 6.0 1.7195077458 9.3915510446 2.6084489554
A/J m 8.8 1.8836263603 12.5152580241 5.0847419759
C57BL/6J f 4.2142857143 1.1256820576 6.434577055 1.9939943736
C57BL/6J m 5.5454545455 1.2699406331 8.0502809943 3.0406280966
CAST/EiJ f 2.7 1.3319249726 5.3270841427 0.0729158573
CAST/EiJ m 4.25 1.4891373899 7.1871693628 1.3128306372
CC001/UncJ f 7.0 2.4317511747 11.7963774847 2.2036225153
CC001/UncJ m 2.0 2.9782747797 7.8743387257 -3.8743387257
CC002/UncJ f 7.5 2.105958293 11.6537847479 3.3462152521
CC002/UncJ m 3.5 2.105958293 7.6537847479 -0.6537847479
CC003/UncJ f 7.5 2.9782747797 13.3743387257 1.6256612743
CC003/UncJ m 2.6666666667 2.4317511747 7.4630441514 -2.1297108181
CC005/TauUncJ f 2.0 2.4317511747 6.7963774847 -2.7963774847
CC005/TauUncJ m 1.5 2.9782747797 7.3743387257 -4.3743387257
CC006/TauUncJ f 2.0 2.9782747797 7.8743387257 -3.8743387257
CC006/TauUncJ m 2.0 2.9782747797 7.8743387257 -3.8743387257
CC009/UncJ f 3.5 2.9782747797 9.3743387257 -2.3743387257
CC009/UncJ m 2.0 2.9782747797 7.8743387257 -3.8743387257
CC011/UncJ f 2.0 2.4317511747 6.7963774847 -2.7963774847
CC011/UncJ m 7.6666666667 2.4317511747 12.4630441514 2.8702891819
CC013/GeniUncJ f 2.0 2.9782747797 7.8743387257 -3.8743387257
CC013/GeniUncJ m 9.0 2.9782747797 14.8743387257 3.1256612743
CC016/GeniUncJ f 5.0 2.4317511747 9.7963774847 0.2036225153
CC016/GeniUncJ m 1.75 2.105958293 5.9037847479 -2.4037847479
CC017/UncJ f 3.0 2.9782747797 8.8743387257 -2.8743387257
CC017/UncJ m 10.6666666667 2.4317511747 15.4630441514 5.8702891819
CC018/UncJ f 6.0 2.4317511747 10.7963774847 1.2036225153
CC018/UncJ m 2.0 2.9782747797 7.8743387257 -3.8743387257
CC019/TauUncJ f 2.5 2.105958293 6.6537847479 -1.6537847479
CC019/TauUncJ m 3.0 2.105958293 7.1537847479 -1.1537847479
CC025/GeniUncJ f 5.3333333333 2.4317511747 10.1297108181 0.5369558486
CC025/GeniUncJ m 5.6666666667 2.4317511747 10.4630441514 0.8702891819
CC027/GeniUncJ f 12.0 2.9782747797 17.8743387257 6.1256612743
CC027/GeniUncJ m 4.5 2.105958293 8.6537847479 0.3462152521
CC028/GeniUncJ f 5.3333333333 2.4317511747 10.1297108181 0.5369558486
CC028/GeniUncJ m 3.0 2.4317511747 7.7963774847 -1.7963774847
CC030/GeniUncJ f 1.5 2.9782747797 7.3743387257 -4.3743387257
CC030/GeniUncJ m 3.0 2.9782747797 8.8743387257 -2.8743387257
CC033/GeniUncJ f 4.0 2.9782747797 9.8743387257 -1.8743387257
CC033/GeniUncJ m 1.5 2.9782747797 7.3743387257 -4.3743387257
CC036/UncJ f 1.3333333333 2.4317511747 6.1297108181 -3.4630441514
CC036/UncJ m 2.0 2.4317511747 6.7963774847 -2.7963774847
CC037/TauUncJ f 4.5 2.9782747797 10.3743387257 -1.3743387257
CC037/TauUncJ m 3.6666666667 2.4317511747 8.4630441514 -1.1297108181
CC040/TauUncJ f 5.3333333333 2.4317511747 10.1297108181 0.5369558486
CC040/TauUncJ m 10.0 2.4317511747 14.7963774847 5.2036225153
CC041/TauUncJ f 4.3333333333 2.4317511747 9.1297108181 -0.4630441514
CC041/TauUncJ m 6.5 2.9782747797 12.3743387257 0.6256612743
CC043/GeniUncJ f 3.0 2.9782747797 8.8743387257 -2.8743387257
CC043/GeniUncJ m 10.5 2.9782747797 16.3743387257 4.6256612743
CC057/UncJ f 3.5 2.9782747797 9.3743387257 -2.3743387257
CC057/UncJ m 3.0 2.9782747797 8.8743387257 -2.8743387257
CC059/TauUncJ f 6.25 2.105958293 10.4037847479 2.0962152521
CC059/TauUncJ m 9.6 1.8836263603 13.3152580241 5.8847419759
CC061/GeniUncJ f 3.3333333333 2.4317511747 8.1297108181 -1.4630441514
CC061/GeniUncJ m 6.5 2.9782747797 12.3743387257 0.6256612743
CC078/TauUncJ f 2.3333333333 2.4317511747 7.1297108181 -2.4630441514
CC078/TauUncJ m 3.6666666667 2.4317511747 8.4630441514 -1.1297108181
CC084/TauJ f 7.5 2.9782747797 13.3743387257 1.6256612743
CC084/TauJ m 2.0 2.9782747797 7.8743387257 -3.8743387257
NOD/ShiLtJ f 2.125 1.4891373899 5.0621693628 -0.8121693628
NOD/ShiLtJ m 3.1818181818 1.2699406331 5.6866446307 0.676991733
NZO/HlLtJ f 3.0 2.4317511747 7.7963774847 -1.7963774847
NZO/HlLtJ m 3.5 2.9782747797 9.3743387257 -2.3743387257
PWK/PhJ f 3.8888888889 1.4039721953 6.6580787208 1.1196990569
PWK/PhJ m 5.0 1.4891373899 7.9371693628 2.0628306372
WSB/EiJ f 6.125 1.4891373899 9.0621693628 3.1878306372
WSB/EiJ m 5.6666666667 1.7195077458 9.0582177112 2.2751156221


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 5.4166666667 1.6084522147 8.5891721713 2.244161162
A/J both 7.4 1.2752210743 9.9152415726 4.8847584274
C57BL/6J both 4.8798701299 0.8485147769 6.5534776986 3.2062625611
CAST/EiJ both 3.475 0.9989437295 5.445313107 1.504686893
CC001/UncJ both 4.5 1.9224681037 8.2918693424 0.7081306576
CC002/UncJ both 5.5 1.4891373899 8.4371693628 2.5628306372
CC003/UncJ both 5.0833333333 1.9224681037 8.8752026758 1.2914639909
CC005/TauUncJ both 1.75 1.9224681037 5.5418693424 -2.0418693424
CC006/TauUncJ both 2.0 2.105958293 6.1537847479 -2.1537847479
CC009/UncJ both 2.75 2.105958293 6.9037847479 -1.4037847479
CC011/UncJ both 4.8333333333 1.7195077458 8.2248843779 1.4417822888
CC013/GeniUncJ both 5.5 2.105958293 9.6537847479 1.3462152521
CC016/GeniUncJ both 3.375 1.6084522147 6.5475055046 0.2024944954
CC017/UncJ both 6.8333333333 1.9224681037 10.6252026758 3.0414639909
CC018/UncJ both 4.0 1.9224681037 7.7918693424 0.2081306576
CC019/TauUncJ both 2.75 1.4891373899 5.6871693628 -0.1871693628
CC025/GeniUncJ both 5.5 1.7195077458 8.8915510446 2.1084489554
CC027/GeniUncJ both 8.25 1.823813381 11.8472831135 4.6527168865
CC028/GeniUncJ both 4.1666666667 1.7195077458 7.5582177112 0.7751156221
CC030/GeniUncJ both 2.25 2.105958293 6.4037847479 -1.9037847479
CC033/GeniUncJ both 2.75 2.105958293 6.9037847479 -1.4037847479
CC036/UncJ both 1.6666666667 1.7195077458 5.0582177112 -1.7248843779
CC037/TauUncJ both 4.0833333333 1.9224681037 7.8752026758 0.2914639909
CC040/TauUncJ both 7.6666666667 1.7195077458 11.0582177112 4.2751156221
CC041/TauUncJ both 5.4166666667 1.9224681037 9.2085360091 1.6247973242
CC043/GeniUncJ both 6.75 2.105958293 10.9037847479 2.5962152521
CC057/UncJ both 3.25 2.105958293 7.4037847479 -0.9037847479
CC059/TauUncJ both 7.925 1.4127197703 10.7114435181 5.1385564819
CC061/GeniUncJ both 4.9166666667 1.9224681037 8.7085360091 1.1247973242
CC078/TauUncJ both 3.0 1.7195077458 6.3915510446 -0.3915510446
CC084/TauJ both 4.75 2.105958293 8.9037847479 0.5962152521
NOD/ShiLtJ both 2.6534090909 0.9785549777 4.5835074955 0.7233106864
NZO/HlLtJ both 3.25 1.9224681037 7.0418693424 -0.5418693424
PWK/PhJ both 4.4444444444 1.0233117916 6.4628210317 2.4260678572
WSB/EiJ both 5.8958333333 1.1373474682 8.139133489 3.6525331776




GWAS analysis not available: Strain panel must be either Inbred, HMDP, BXD, BXH, CXB, or AXB/BXA