Project measure / variable:   CSNA03   latency_in_acq_JAX

ID, description, units MPD:110471   latency_in_acq_JAX   latency (reversal learning assay), founders    acquisition   informational
Data set, strains CSNA03   inbred w/CC8   8 strains     sex: both     age:
Procedure operant conditioning chamber
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  STRAIN COMPARISON PLOT
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CSNA03 - latency (reversal learning assay), founders acquisition



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested8 strains8 strains
Mean of the strain means85094.0   None 53565.0   None
Median of the strain means45038.0   None 36038.0   None
SD of the strain means± 105385.0 ± 52645.0
Coefficient of variation (CV)1.2385 0.9828
Min–max range of strain means14936.0   –   324832.0   None 2474.0   –   170429.0   None
Mean sample size per strain7.6   mice 6.9   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 3396325991.489 3396325991.489 1.3274 0.252
strain 7 277701736653.7372 39671676664.8196 15.505 < 0.0001
sex:strain 7 121365746343.844 17337963763.4063 6.7762 < 0.0001
Residuals 100 255864414448.7576 2558644144.4876


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 324832.0 129939.0   3 75021.0 0.4 174793.0, 400532.0 2.27
129S1/SvImJ m 76060.0 96447.0   4 48223.0 1.268 6291.0, 212026.0 0.43
A/J f 147092.0 74430.0   6 30386.0 0.506 4199.0, 203725.0 0.59
A/J m 170429.0 69324.0   5 31003.0 0.4068 82853.0, 239051.0 2.22
C57BL/6J f 47138.0 34984.0   14 9350.0 0.7422 2097.0, 122687.0 -0.36
C57BL/6J m 19802.0 17395.0   11 5245.0 0.8785 628.0, 65383.0 -0.64
CAST/EiJ f 24792.0 20647.0   10 6529.0 0.8328 5120.0, 71206.0 -0.57
CAST/EiJ m 62037.0 67270.0   8 23783.0 1.0843 2068.0, 172775.0 0.16
NOD/ShiLtJ f 23838.0 37901.0   8 13400.0 1.59 2799.0, 114609.0 -0.58
NOD/ShiLtJ m 32787.0 37744.0   11 11380.0 1.1512 1973.0, 114619.0 -0.39
NZO/HlLtJ f 42939.0 63657.0   3 36753.0 1.4825 4747.0, 116425.0 -0.4
NZO/HlLtJ m 2474.0 958.8   2   678.0 0.3876 1796.0, 3152.0 -0.97
PWK/PhJ f 14936.0 14308.0   9 4769.0 0.9579 2340.0, 49489.0 -0.67
PWK/PhJ m 39288.0 51170.0   8 18091.0 1.3024 1896.0, 153359.0 -0.27
WSB/EiJ f 55182.0 73848.0   8 26109.0 1.3383 4095.0, 198877.0 -0.28
WSB/EiJ m 25641.0 21314.0   6 8701.0 0.8312 6081.0, 54991.0 -0.53


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 324832.0000000001 29204.1329523042 382772.1680005467 266891.8319994535
129S1/SvImJ m 76059.4999999992 25291.5210321937 126237.1573880108 25881.8426119876
A/J f 147092.3333333337 20650.4404492478 188062.2190296079 106122.4476370594
A/J m 170429.1999999999 22621.4241129403 215309.4611485153 125548.9388514845
C57BL/6J f 47137.642857143 13518.8866418366 73958.7289166952 20316.5567975907
C57BL/6J m 19801.9999999998 15251.361025667 50060.2658936433 -10456.2658936437
CAST/EiJ f 24791.8000000003 15995.7623903569 56526.9369995386 -6943.3369995381
CAST/EiJ m 62037.3749999998 17883.8060283864 97518.3368031181 26556.4131968814
NOD/ShiLtJ f 23837.7500000003 17883.8060283863 59318.7118031186 -11643.2118031179
NOD/ShiLtJ m 32787.3636363636 15251.361025667 63045.6295300072 2529.0977427201
NZO/HlLtJ f 42938.9999999996 29204.1329523042 100879.1680005463 -15001.168000547
NZO/HlLtJ m 2474.0000000004 35767.6120567727 73435.9236062371 -68487.9236062362
PWK/PhJ f 14936.2222222223 16861.0140214624 48387.99381423 -18515.5493697855
PWK/PhJ m 39287.4999999998 17883.8060283864 74768.4618031181 3806.5381968814
WSB/EiJ f 55181.5000000002 17883.8060283863 90662.4618031184 19700.5381968819
WSB/EiJ m 25640.6666666665 20650.4404492478 66610.5523629408 -15329.2190296078


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 200445.7499999997 19316.7182617659 238769.5688626869 162121.9311373124
A/J both 158760.7666666668 15314.7765217571 189144.847098386 128376.6862349476
C57BL/6J both 33469.8214285714 10190.2442214363 53686.9757307001 13252.6671264426
CAST/EiJ both 43414.5875 11996.8217927677 67215.9402496539 19613.2347503462
NOD/ShiLtJ both 28312.556818182 11751.9629338696 51628.1165657238 4996.9970706402
NZO/HlLtJ both 22706.5 23087.8943049147 68512.2247236329 -23099.2247236328
PWK/PhJ both 27111.861111111 12289.4702071825 51493.8199799048 2729.9022423173
WSB/EiJ both 40411.0833333334 13658.9824731646 67510.1155321044 13312.0511345623




  GWAS USING LINEAR MIXED MODELS