Project measure / variable:   CSNA03   total_time_in_rev_JAX

ID, description, units MPD:110470   total_time_in_rev_JAX   total time for all trials (reversal learning assay), founders   [min]  reversal  
Data set, strains CSNA03   inbred w/CC8   8 strains     sex: both     age:
Procedure operant conditioning chamber
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  STRAIN COMPARISON PLOT
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CSNA03 - total time for all trials (reversal learning assay), founders reversal



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested8 strains8 strains
Mean of the strain means226.9   min 287.7   min
Median of the strain means219.4   min 288.6   min
SD of the strain means± 94.34 ± 105.9
Coefficient of variation (CV)0.4158 0.3679
Min–max range of strain means100.6   –   343.6   min 169.7   –   514.2   min
Mean sample size per strain7.6   mice 6.9   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 97554.2805 97554.2805 1.5876 0.2106
strain 7 797707.3262 113958.1895 1.8545 0.0851
sex:strain 7 83469.4633 11924.209 0.1941 0.9861
Residuals 100 6144818.2019 61448.182


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 302.8 239.7   3 138.4 0.7918 28.168, 470.4 0.8
129S1/SvImJ m 309.5 265.2   4 132.6 0.8567 81.27, 636.4 0.21
A/J f 340.2 316.1   6 129.0 0.929 111.0, 949.7 1.2
A/J m 514.2 489.8   5 219.0 0.9524 94.58, 1140.0 2.14
C57BL/6J f 230.5 219.0   14 58.53 0.9502 41.678, 897.7 0.04
C57BL/6J m 293.8 258.0   11 77.8 0.8782 60.0, 812.8 0.06
CAST/EiJ f 133.9 69.93   10 22.113 0.5222 29.03, 258.8 -0.99
CAST/EiJ m 238.0 291.9   8 103.2 1.2264 46.995, 876.0 -0.47
NOD/ShiLtJ f 100.6 61.19   8 21.633 0.6079 23.578, 211.2 -1.34
NOD/ShiLtJ m 169.7 143.4   11 43.229 0.845 30.97, 467.4 -1.12
NZO/HlLtJ f 155.3 120.4   3 69.54 0.7758 77.36, 294.0 -0.76
NZO/HlLtJ m 188.2 186.8   2   132.1 0.9927 56.1, 320.3 -0.94
PWK/PhJ f 208.4 250.7   9 83.57 1.2032 75.78, 870.9 -0.2
PWK/PhJ m 283.4 182.1   8 64.39 0.6427 33.307, 515.0 -0.04
WSB/EiJ f 343.6 280.3   8 99.09 0.8158 78.44, 897.8 1.24
WSB/EiJ m 305.1 412.2   6 168.3 1.3513 31.798, 1125.0 0.16


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 302.756 143.1178791756 586.6977960758 18.8142039242
129S1/SvImJ m 309.4925 123.9437191018 555.3933085978 63.5916914022
A/J f 340.2166666667 101.1996228741 540.9938361342 139.4394971992
A/J m 514.236 110.8586325183 734.1763694988 294.2956305012
C57BL/6J f 230.4655714286 66.2507045888 361.9050824148 99.0260604423
C57BL/6J m 293.82 74.7408747967 442.1037668662 145.5362331338
CAST/EiJ f 133.921 78.3888908068 289.4423267293 -21.6003267293
CAST/EiJ m 238.001875 87.6414442624 411.8800042588 64.1237457412
NOD/ShiLtJ f 100.6475 87.6414442624 274.5256292588 -73.2306292588
NOD/ShiLtJ m 169.6734545455 74.7408747967 317.9572214116 21.3896876793
NZO/HlLtJ f 155.2666666667 143.1178791756 439.2084627425 -128.6751294091
NZO/HlLtJ m 188.2 175.2828885247 535.9562585176 -159.5562585176
PWK/PhJ f 208.3755555556 82.6291460679 372.3094279541 44.441683157
PWK/PhJ m 283.375875 87.6414442624 457.2540042588 109.4977457412
WSB/EiJ f 343.5675 87.6414442624 517.4456292588 169.6893707412
WSB/EiJ m 305.068 101.1996228741 505.8451694675 104.2908305325


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 306.12425 94.6635791164 493.9340948084 118.3144051916
A/J both 427.2263333333 75.0516490053 576.1266673781 278.3259992885
C57BL/6J both 262.1427857143 49.9383475495 361.2190449346 163.066526494
CAST/EiJ both 185.9614375 58.7916681051 302.6024325469 69.3204424531
NOD/ShiLtJ both 135.1604772727 57.5917118989 249.4207933831 20.9001611624
NZO/HlLtJ both 171.7333333333 113.1446180219 396.209032963 -52.7423662963
PWK/PhJ both 245.8757152778 60.2258219792 365.3620307642 126.3893997913
WSB/EiJ both 324.31775 66.9372587246 457.1193648376 191.5161351624




  GWAS USING LINEAR MIXED MODELS