Project measure / variable:   CSNA03   pct_omit_in_acq_JAX

ID, description, units MPD:110467   pct_omit_in_acq_JAX   percentage of responses considered omissions (reversal learning assay), founders   [%]  acquisition  
Data set, strains CSNA03   inbred w/CC8   8 strains     sex: both     age:
Procedure operant conditioning chamber
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  STRAIN COMPARISON PLOT
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CSNA03 - percentage of responses considered omissions (reversal learning assay), founders acquisition



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested8 strains8 strains
Mean of the strain means64.22   % 44.422   %
Median of the strain means25.974   % 43.1   %
SD of the strain means± 78.11 ± 30.77
Coefficient of variation (CV)1.2162 0.6927
Min–max range of strain means9.4957   –   240.2   % 8.6957   –   90.45   %
Mean sample size per strain7.0   mice 6.5   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 278.5868 278.5868 0.1909 0.6632
strain 6 142252.6033 23708.7672 16.2469 < 0.0001
sex:strain 6 49273.4377 8212.2396 5.6276 < 0.0001
Residuals 91 132794.2404 1459.2774


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 240.2 133.3   3 76.95 0.555 86.27, 319.0 2.25
129S1/SvImJ m 90.45 71.99   4 35.995 0.7959 40.0, 192.7 1.5
A/J f 98.05 38.828   6 15.852 0.396 50.0, 154.7 0.43
A/J m 82.71 39.396   5 17.619 0.4763 43.173, 144.6 1.24
C57BL/6J f 21.724 15.712   14 4.1993 0.7233 5.5556, 62.14 -0.54
C57BL/6J m 21.601 21.227   10 6.7125 0.9827 1.4925, 69.7 -0.74
CAST/EiJ f 13.002 6.3135   8 2.2322 0.4856 4.5455, 25.0 -0.66
CAST/EiJ m 52.98 67.25   8 23.777 1.2694 2.7027, 200.0 0.28
NOD/ShiLtJ f 23.358 23.173   8 8.1929 0.9921 1.8519, 60.91 -0.52
NOD/ShiLtJ m 52.18 46.427   10 14.682 0.8897 9.375, 150.0 0.25
NZO/HlLtJ f 79.38 20.329   2   14.375 0.2561 65.0, 93.75 0.19
NZO/HlLtJ m 8.6957 0.0   1   0.0 0.0 8.6957, 8.6957 -1.16
PWK/PhJ f 9.4957 5.9071   7 2.2327 0.6221 1.4851, 15.0 -0.7
PWK/PhJ m 12.735 13.103   8 4.6326 1.0289 0.97087, 40.0 -1.03
WSB/EiJ f 28.589 21.829   8 7.7176 0.7635 2.5316, 67.32 -0.46
WSB/EiJ m 34.021 13.149   6 5.3679 0.3865 16.418, 54.17 -0.34


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 240.1566666667 22.0550626621 283.966339278 196.3469940554
129S1/SvImJ m 90.4475 19.1002445474 128.3877894129 52.5072105871
A/J f 98.0466666667 15.5952843679 129.0247832517 67.0685500817
A/J m 82.7126 17.083778078 116.6474264853 48.7777735147
C57BL/6J f 21.7242642857 10.2095101572 42.0042020197 1.4443265517
C57BL/6J m 21.60086 12.0800553272 45.5964059261 -2.3946859261
CAST/EiJ f 13.0023 13.5059124418 39.830135924 -13.825535924
CAST/EiJ m 52.9772125 13.5059124418 79.805048424 26.149376576
NOD/ShiLtJ f 23.3584875 13.5059124418 50.186323424 -3.469348424
NOD/ShiLtJ m 52.1824 12.0800553272 76.1779459261 28.1868540739
PWK/PhJ f 9.4957142857 14.4384277294 38.1758772732 -19.1844487018
PWK/PhJ m 12.73490875 13.5059124418 39.562744674 -14.092927174
WSB/EiJ f 28.5892125 13.5059124418 55.417048424 1.761376576
WSB/EiJ m 34.0208333333 15.5952843679 64.9989499183 3.0427167483


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 165.3020833333 14.5880527385 194.2794580205 136.3247086462
A/J both 90.3796333333 11.5657724335 113.3536194684 67.4056471983
C57BL/6J both 21.6625621429 7.9082525623 37.371334364 5.9537899217
CAST/EiJ both 32.98975625 9.5501222737 51.9599009564 14.0196115436
NOD/ShiLtJ both 37.77044375 9.0600414954 55.7671031946 19.7737843054
PWK/PhJ both 11.1153115179 9.8853157029 30.7512767943 -8.5206537586
WSB/EiJ both 31.3050229167 10.3153110157 51.7951210589 10.8149247744




  GWAS USING LINEAR MIXED MODELS