Project measure / variable:   CSNA03   omit_in_rev_JAX

ID, description, units MPD:110464   omit_in_rev_JAX   total number of omissions (successful response in central nose poke hole, but no response in flanking hole within 30 s) (reversal learning assay), founders   [n]  reversal  
Data set, strains CSNA03   inbred w/CC8   8 strains     sex: both     age:
Procedure operant conditioning chamber
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  STRAIN COMPARISON PLOT
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CSNA03 - total number of omissions (successful response in central nose poke hole, but no response in flanking hole within 30 s) (reversal learning assay), founders reversal



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested8 strains8 strains
Mean of the strain means19.017   n 29.302   n
Median of the strain means16.727   n 28.5   n
SD of the strain means± 10.605 ± 14.39
Coefficient of variation (CV)0.5577 0.4911
Min–max range of strain means7.4   –   37.125   n 10.5   –   52.8   n
Mean sample size per strain7.4   mice 6.8   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 2193.4076 2193.4076 3.5049 0.0642
strain 7 14001.4069 2000.201 3.1962 0.0043
sex:strain 7 1166.934 166.7049 0.2664 0.9655
Residuals 97 60703.1365 625.8055


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 25.0 19.079   3 11.015 0.7632 3.0, 37.0 0.56
129S1/SvImJ m 36.75 30.642   4 15.321 0.8338 8.0, 73.0 0.52
A/J f 29.0 28.362   6 11.579 0.978 9.0, 81.0 0.94
A/J m 52.8 53.31   5 23.84 1.0096 2.0, 132.0 1.63
C57BL/6J f 19.786 20.748   14 5.5452 1.0486 1.0, 72.0 0.07
C57BL/6J m 35.0 31.875   11 9.6106 0.9107 5.0, 96.0 0.4
CAST/EiJ f 7.4 5.2957   10 1.6746 0.7156 1.0, 16.0 -1.1
CAST/EiJ m 17.875 25.38   8 8.973 1.4198 3.0, 74.0 -0.79
NOD/ShiLtJ f 10.286 6.9454   7 2.6251 0.6752 2.0, 20.0 -0.82
NOD/ShiLtJ m 18.091 13.479   11 4.0642 0.7451 1.0, 40.0 -0.78
NZO/HlLtJ f 13.667 5.0332   3 2.9059 0.3683 9.0, 19.0 -0.5
NZO/HlLtJ m 22.0 21.213   2   15.0 0.9642 7.0, 37.0 -0.51
PWK/PhJ f 9.875 8.6592   8 3.0615 0.8769 2.0, 29.0 -0.86
PWK/PhJ m 10.5 9.5618   8 3.3806 0.9107 1.0, 30.0 -1.31
WSB/EiJ f 37.125 34.836   8 12.316 0.9383 2.0, 95.0 1.71
WSB/EiJ m 41.4 47.395   5 21.196 1.1448 2.0, 121.0 0.84


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 25.0 14.4430552012 53.6654665348 -3.6654665348
129S1/SvImJ m 36.75 12.5080527125 61.5750222304 11.9249777696
A/J f 29.0 10.2127822738 49.2695457726 8.7304542274
A/J m 52.8 11.1875424525 75.0041749001 30.5958250999
C57BL/6J f 19.7857142857 6.6858354037 33.0552468293 6.5161817421
C57BL/6J m 35.0 7.5426395828 49.9700516637 20.0299483363
CAST/EiJ f 7.4 7.910787133 23.1007226425 -8.3007226425
CAST/EiJ m 17.875 8.8445288925 35.4289415623 0.3210584377
NOD/ShiLtJ f 10.2857142857 9.4551991037 29.0516671753 -8.4802386038
NOD/ShiLtJ m 18.0909090909 7.5426395828 33.0609607547 3.1208574272
NZO/HlLtJ f 13.6666666667 14.4430552012 42.3321332014 -14.9987998681
NZO/HlLtJ m 22.0 17.6890577849 57.1078831245 -13.1078831245
PWK/PhJ f 9.875 8.8445288925 27.4289415623 -7.6789415623
PWK/PhJ m 10.5 8.8445288925 28.0539415623 -7.0539415623
WSB/EiJ f 37.125 8.8445288925 54.6789415623 19.5710584377
WSB/EiJ m 41.4 11.1875424525 63.6041749001 19.1958250999


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 30.875 9.5531830586 49.8354239167 11.9145760833
A/J both 40.9 7.5740020448 55.9322974693 25.8677025307
C57BL/6J both 27.3928571429 5.0396380555 37.3951436407 17.390570645
CAST/EiJ both 12.6375 5.9330903498 24.4130419819 0.8619580181
NOD/ShiLtJ both 14.1883116883 6.0475656666 26.1910554858 2.1855678909
NZO/HlLtJ both 17.8333333333 11.4182377019 40.4953744436 -4.828707777
PWK/PhJ both 10.1875 6.2540263563 22.6000111152 -2.2250111152
WSB/EiJ both 39.2625 7.1306871593 53.4149401373 25.1100598627




  GWAS USING LINEAR MIXED MODELS