Project measure / variable:   CSNA03   correct_in_rev_JAX

ID, description, units MPD:110462   correct_in_rev_JAX   total number of correct responses (successful response in central nose poke hole with subsequent response in correct flanking hole) (reversal learning assay), founders   [n]  reversal  
Data set, strains CSNA03   inbred w/CC8   8 strains     sex: both     age:
Procedure operant conditioning chamber
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  STRAIN COMPARISON PLOT
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CSNA03 - total number of correct responses (successful response in central nose poke hole with subsequent response in correct flanking hole) (reversal learning assay), founders reversal



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested8 strains8 strains
Mean of the strain means54.96   n 56.38   n
Median of the strain means58.0   n 56.29   n
SD of the strain means± 14.576 ± 11.006
Coefficient of variation (CV)0.2652 0.1952
Min–max range of strain means30.667   –   73.0   n 41.75   –   71.0   n
Mean sample size per strain7.6   mice 6.9   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 14.3354 14.3354 0.0102 0.9197
strain 7 11649.952 1664.2789 1.1872 0.317
sex:strain 7 1683.9433 240.5633 0.1716 0.9904
Residuals 100 140186.0797 1401.8608


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 30.667 11.59   3 6.6916 0.3779 23.0, 44.0 -1.67
129S1/SvImJ m 41.75 18.41   4 9.2048 0.441 26.0, 61.0 -1.33
A/J f 59.5 21.861   6 8.9247 0.3674 34.0, 98.0 0.31
A/J m 55.4 20.732   5 9.2715 0.3742 38.0, 80.0 -0.09
C57BL/6J f 60.36 43.473   14 11.619 0.7203 28.0, 203.0 0.37
C57BL/6J m 62.73 45.756   11 13.796 0.7294 11.0, 173.0 0.58
CAST/EiJ f 73.0 32.335   10 10.225 0.4429 26.0, 132.0 1.24
CAST/EiJ m 69.62 51.4   8 18.174 0.7383 18.0, 171.0 1.2
NOD/ShiLtJ f 40.75 10.361   8 3.6633 0.2543 26.0, 56.0 -0.97
NOD/ShiLtJ m 57.18 37.207   11 11.218 0.6507 16.0, 156.0 0.07
NZO/HlLtJ f 47.667 8.1445   3 4.7022 0.1709 42.0, 57.0 -0.5
NZO/HlLtJ m 44.0 2.8284   2   2.0 0.0643 42.0, 46.0 -1.12
PWK/PhJ f 71.22 53.43   9 17.81 0.7502 38.0, 211.0 1.12
PWK/PhJ m 71.0 54.49   8 19.264 0.7674 31.0, 194.0 1.33
WSB/EiJ f 56.5 17.08   8 6.0386 0.3023 22.0, 74.0 0.11
WSB/EiJ m 49.333 14.024   6 5.7252 0.2843 30.0, 72.0 -0.64


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 30.6666666667 21.6168205872 73.5538230327 -12.2204896994
129S1/SvImJ m 41.75 18.7207157776 78.8913669091 4.6086330909
A/J f 59.5 15.2854004249 89.8257990922 29.1742009078
A/J m 55.4 16.7443172264 88.6202484744 22.1797515256
C57BL/6J f 60.3571428571 10.0066434964 80.21003855 40.5042471643
C57BL/6J m 62.7272727273 11.2890163711 85.1243596797 40.3301857749
CAST/EiJ f 73.0 11.8400202572 96.4902629689 49.5097370311
CAST/EiJ m 69.625 13.237545075 95.8879124039 43.3620875961
NOD/ShiLtJ f 40.75 13.237545075 67.0129124039 14.4870875961
NOD/ShiLtJ m 57.1818181818 11.2890163711 79.5789051342 34.7847312294
NZO/HlLtJ f 47.6666666667 21.6168205872 90.5538230327 4.7795103006
NZO/HlLtJ m 44.0 26.47509015 96.5258248079 -8.5258248079
PWK/PhJ f 71.2222222222 12.480477185 95.9831334949 46.4613109495
PWK/PhJ m 71.0 13.237545075 97.2629124039 44.7370875961
WSB/EiJ f 56.5 13.237545075 82.7629124039 30.2370875961
WSB/EiJ m 49.3333333333 15.2854004249 79.6591324256 19.0075342411


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 36.2083333333 14.2981828524 64.5755208792 7.8411457875
A/J both 57.45 11.3359563506 79.9402145348 34.9597854652
C57BL/6J both 61.5422077922 7.5427913383 76.5068909775 46.5775246069
CAST/EiJ both 71.3125 8.8800151929 88.9301972267 53.6948027733
NOD/ShiLtJ both 48.9659090909 8.6987713247 66.2240236453 31.7077945365
NZO/HlLtJ both 45.8333333333 17.0895972067 79.7386074545 11.9280592122
PWK/PhJ both 71.1111111111 9.0966327613 89.1585714241 53.0636507981
WSB/EiJ both 52.9166666667 10.1103420536 72.9752973435 32.8580359898




  GWAS USING LINEAR MIXED MODELS