Project measure / variable:   CSNA03   trials_in_acq_JAX

ID, description, units MPD:110459   trials_in_acq_JAX   total number of trials (reversal learning assay), founders   [n]  acquisition  
Data set, strains CSNA03   inbred w/CC8   8 strains     sex: both     age:
Procedure operant conditioning chamber
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  STRAIN COMPARISON PLOT
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CSNA03 - total number of trials (reversal learning assay), founders acquisition



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested8 strains8 strains
Mean of the strain means79.94   n 69.84   n
Median of the strain means83.22   n 67.99   n
SD of the strain means± 25.49 ± 32.102
Coefficient of variation (CV)0.3189 0.4597
Min–max range of strain means35.0   –   117.6   n 33.5   –   138.0   n
Mean sample size per strain7.6   mice 6.9   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 5002.8666 5002.8666 1.8771 0.1737
strain 7 40372.5676 5767.5097 2.164 0.0437
sex:strain 7 19878.5741 2839.7963 1.0655 0.3913
Residuals 100 266519.0521 2665.1905


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 76.0 66.84   3 38.588 0.8794 33.0, 153.0 -0.15
129S1/SvImJ m 47.75 42.664   4 21.332 0.8935 20.0, 110.0 -0.69
A/J f 92.17 41.058   6 16.762 0.4455 20.0, 129.0 0.48
A/J m 138.0 83.41   5 37.304 0.6045 65.0, 271.0 2.12
C57BL/6J f 90.43 44.415   14 11.871 0.4912 20.0, 152.0 0.41
C57BL/6J m 74.82 44.445   11 13.401 0.594 20.0, 151.0 0.16
CAST/EiJ f 117.6 73.24   10 23.16 0.6228 20.0, 284.0 1.48
CAST/EiJ m 82.0 44.951   8 15.892 0.5482 25.0, 163.0 0.38
NOD/ShiLtJ f 62.12 36.377   8 12.861 0.5855 20.0, 117.0 -0.7
NOD/ShiLtJ m 63.36 54.33   11 16.382 0.8575 20.0, 167.0 -0.2
NZO/HlLtJ f 35.0 14.107   3 8.1445 0.403 20.0, 48.0 -1.76
NZO/HlLtJ m 33.5 14.849   2   10.5 0.4433 23.0, 44.0 -1.13
PWK/PhJ f 67.33 60.48   9 20.159 0.8982 20.0, 202.0 -0.49
PWK/PhJ m 72.62 62.88   8 22.23 0.8658 20.0, 199.0 0.09
WSB/EiJ f 98.88 34.266   8 12.115 0.3466 63.0, 153.0 0.74
WSB/EiJ m 46.667 26.425   6 10.788 0.5662 20.0, 87.0 -0.72


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 76.0 29.8059866501 135.1342285953 16.8657714047
129S1/SvImJ m 47.75 25.8127416239 98.9617441968 -3.4617441968
A/J f 92.1666666667 21.0760152803 133.9808807067 50.3524526267
A/J m 138.0 23.0876179826 183.8051765081 92.1948234919
C57BL/6J f 90.4285714286 13.7974907671 117.8024001376 63.0547427195
C57BL/6J m 74.8181818182 15.5656688685 105.7000255201 43.9363381163
CAST/EiJ f 117.6 16.325411237 149.9891509223 85.2108490777
CAST/EiJ m 82.0 18.2523646433 118.2121715979 45.7878284021
NOD/ShiLtJ f 62.125 18.2523646433 98.3371715979 25.9128284021
NOD/ShiLtJ m 63.3636363636 15.5656688685 94.2454800655 32.4817926618
NZO/HlLtJ f 35.0 29.8059866501 94.1342285953 -24.1342285953
NZO/HlLtJ m 33.5 36.5047292865 105.9243431958 -38.9243431958
PWK/PhJ f 67.3333333333 17.2084944159 101.4744961312 33.1921705355
PWK/PhJ m 72.625 18.2523646433 108.8371715979 36.4128284021
WSB/EiJ f 98.875 18.2523646433 135.0871715979 62.6628284021
WSB/EiJ m 46.6666666667 21.0760152803 88.4808807067 4.8524526267


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 61.875 19.7148070643 100.9886157087 22.7613842913
A/J both 115.0833333333 15.6303912635 146.0935844236 84.0730822431
C57BL/6J both 82.6233766234 10.4002499825 103.2571763742 61.9895768726
CAST/EiJ both 99.8 12.2440584277 124.0918631918 75.5081368082
NOD/ShiLtJ both 62.7443181818 11.9941533923 86.540376901 38.9482594626
NZO/HlLtJ both 34.25 23.5637014307 80.9997125096 -12.4997125096
PWK/PhJ both 69.9791666667 12.5427378902 94.8636014052 45.0947319281
WSB/EiJ both 72.7708333333 13.9404737649 100.4283362377 45.113330429




  GWAS USING LINEAR MIXED MODELS