Project measure / variable:   Golani1   CNTRT

ID, description, units MPD:10914   CNTRT   proportion of time spent away from wall, 30 min test, logit transformed   [logit(ratio)]  
Data set, strains Golani1   inbred   8 strains     sex: m     age: 10wks
Procedure open field test
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  STRAIN COMPARISON PLOT
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Golani1 - proportion of time spent away from wall, 30 min test, logit transformed



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested8 strains
Mean of the strain means-3.12   logit(ratio)
Median of the strain means-2.93   logit(ratio)
SD of the strain means± 1.84
Coefficient of variation (CV)-0.592
Min–max range of strain means-5.78   –   -1.16   logit(ratio)
Mean sample size per strain34.5   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 7 807.089 115.2984 45.6194 < 0.0001
Residuals 268 677.3433 2.5274


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ m -3.61 2.3   34 0.394 -0.638 -7.5, -0.66 -0.27
A/J m -5.58 2.55   32 0.451 -0.457 -7.5, -0.61 -1.34
BALB/cByJ m -5.78 1.83   33 0.318 -0.316 -7.5, -2.46 -1.44
C3H/HeJ m -1.67 1.36   35 0.23 -0.813 -7.5, -0.2 0.78
C57BL/6J m -1.16 0.394   36 0.0656 -0.34 -2.07, -0.56 1.06
DBA/2J m -3.62 1.48   36 0.246 -0.408 -7.5, -1.17 -0.27
FVB/NJ m -1.25 0.51   36 0.085 -0.408 -2.2, -0.01 1.01
SJL/J m -2.26 1.11   34 0.191 -0.491 -7.5, -0.71 0.46


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ m -3.6056 0.2726 -3.0688 -4.1424
A/J m -5.5831 0.281 -5.0298 -6.1364
BALB/cByJ m -5.7842 0.2767 -5.2394 -6.3291
C3H/HeJ m -1.6711 0.2687 -1.1421 -2.2002
C57BL/6J m -1.1581 0.265 -0.6364 -1.6797
DBA/2J m -3.6192 0.265 -3.0975 -4.1408
FVB/NJ m -1.2511 0.265 -0.7294 -1.7728
SJL/J m -2.2638 0.2726 -1.727 -2.8006




  GWAS USING LINEAR MIXED MODELS