Project measure / variable:   Wahlsten1   open

ID, description, units MPD:10855   open   time spent in two open arms   [s]  
Data set, strains Wahlsten1   inbred   21 strains     sex: both     age: 9wks
Procedure elevated plus maze
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  STRAIN COMPARISON PLOT
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Wahlsten1 - time spent in two open arms



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested21 strains21 strains
Mean of the strain means16.5   s 15.9   s
Median of the strain means16.0   s 14.9   s
SD of the strain means± 6.63 ± 6.84
Coefficient of variation (CV)0.402 0.430
Min–max range of strain means3.66   –   26.8   s 4.12   –   34.9   s
Mean sample size per strain8.9   mice 8.8   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 50.0277 50.0277 0.4632 0.4966
strain 20 10395.1238 519.7562 4.8121 < 0.0001
sex:strain 20 2939.1551 146.9578 1.3606 0.1395
Residuals 329 35535.6459 108.0111


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 26.5 18.4   7 6.94 0.692 3.6, 46.2 1.51
129S1/SvImJ m 20.6 14.9   10 4.72 0.724 0.68
A/J f 3.66 9.54   8 3.37 2.6 -1.94
A/J m 11.4 20.3   8 7.19 1.79 -0.66
AKR/J f 8.96 4.75   8 1.68 0.53 1.12, 15.4 -1.14
AKR/J m 6.24 4.6   8 1.63 0.737 0.11, 13.4 -1.42
BALB/cByJ f 12.6 10.6   10 3.36 0.841 -0.59
BALB/cByJ m 18.9 7.59   8 2.68 0.402 7.74, 29.5 0.44
BTBR T+ Itpr3tf/J f 23.8 8.75   12 2.53 0.368 6.56, 35.1 1.1
BTBR T+ Itpr3tf/J m 34.9 6.37   5 2.85 0.182 26.4, 42.3 2.78
C3H/HeJ f 14.8 9.55   8 3.38 0.645 0.14, 27.8 -0.26
C3H/HeJ m 14.5 8.55   8 3.02 0.592 0.32, 31.3 -0.21
C57BL/6J f 20.4 7.62   8 2.7 0.374 9.22, 29.0 0.59
C57BL/6J m 17.0 11.7   10 3.7 0.688 5.2, 34.0 0.16
C57L/J f 10.0 4.24   10 1.34 0.423 3.33, 18.7 -0.98
C57L/J m 14.4 3.54   6 1.45 0.247 9.51, 18.4 -0.22
C58/J f 22.7 12.5   8 4.43 0.552 5.11, 43.4 0.93
C58/J m 12.1 5.84   10 1.85 0.481 4.98, 19.9 -0.56
CAST/EiJ f 26.8 12.6   8 4.46 0.471 1.37, 41.1 1.55
CAST/EiJ m 14.9 8.34   9 2.78 0.561 4.26, 28.5 -0.15
DBA/2J f 7.85 5.33   8 1.88 0.679 0.89, 15.8 -1.3
DBA/2J m 9.01 5.51   8 1.95 0.612 1.51, 18.4 -1.01
FVB/NJ f 16.0 7.43   10 2.35 0.465 4.33, 27.3 -0.08
FVB/NJ m 21.4 5.33   11 1.61 0.248 12.0, 30.2 0.8
MOLF/EiJ f 9.11 3.47   8 1.23 0.381 2.44, 14.5 -1.11
MOLF/EiJ m 8.37 4.49   7 1.7 0.536 0.34, 13.3 -1.1
NOD/ShiLtJ f 20.6 17.0   12 4.92 0.827 0.44, 60.0 0.62
NOD/ShiLtJ m 13.0 9.36   12 2.7 0.719 0.3, 28.1 -0.43
NZB/BlNJ f 14.2 8.83   6 3.61 0.624 -0.35
NZB/BlNJ m 15.0 10.3   12 2.96 0.683 0.26, 35.8 -0.13
PERA/EiJ f 17.9 8.71   10 2.75 0.486 3.98, 29.7 0.21
PERA/EiJ m 14.5 9.5   11 2.86 0.654 -0.21
PL/J f 20.0 12.1   12 3.49 0.604 0.15, 46.6 0.53
PL/J m 19.9 7.34   8 2.6 0.368 7.86, 32.0 0.58
SJL/J f 14.2 10.3   8 3.64 0.722 0.18, 28.9 -0.35
SJL/J m 18.7 14.1   10 4.46 0.757 0.16, 37.9 0.41
SM/J f 20.5 8.31   14 2.22 0.406 5.32, 32.1 0.6
SM/J m 20.5 13.0   8 4.59 0.634 0.26, 36.3 0.67
SPRET/EiJ f 11.1 24.0   6 9.8 2.16 -0.81
SPRET/EiJ m 4.12 1.64   2   1.16 0.398 2.96, 5.28 -1.73
SWR/J f 24.8 6.93   9 2.31 0.279 18.8, 36.7 1.25
SWR/J m 24.8 8.2   10 2.59 0.33 9.84, 38.3 1.3


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 26.5486 3.9281 34.276 18.8212
129S1/SvImJ m 20.628 3.2865 27.0932 14.1628
A/J f 3.665 3.6744 10.8933 0.0
A/J m 11.3562 3.6744 18.5846 4.1279
AKR/J f 8.9625 3.6744 16.1908 1.7342
AKR/J m 6.2437 3.6744 13.4721 0.0
BALB/cByJ f 12.646 3.2865 19.1112 6.1808
BALB/cByJ m 18.8925 3.6744 26.1208 11.6642
BTBR T+ Itpr3tf/J f 23.7883 3.0002 29.6902 17.8864
BTBR T+ Itpr3tf/J m 34.92 4.6478 44.0632 25.7768
C3H/HeJ f 14.8 3.6744 22.0283 7.5717
C3H/HeJ m 14.4525 3.6744 21.6808 7.2242
C57BL/6J f 20.39 3.6744 27.6183 13.1617
C57BL/6J m 17.007 3.2865 23.4722 10.5418
C57L/J f 10.038 3.2865 16.5032 3.5728
C57L/J m 14.3517 4.2429 22.6982 6.0051
C58/J f 22.7012 3.6744 29.9296 15.4729
C58/J m 12.134 3.2865 18.5992 5.6688
CAST/EiJ f 26.7713 3.6744 33.9996 19.5429
CAST/EiJ m 14.8622 3.4643 21.6772 8.0473
DBA/2J f 7.85 3.6744 15.0783 0.6217
DBA/2J m 9.0075 3.6744 16.2358 1.7792
FVB/NJ f 15.979 3.2865 22.4442 9.5138
FVB/NJ m 21.4455 3.1336 27.6098 15.2811
MOLF/EiJ f 9.11 3.6744 16.3383 1.8817
MOLF/EiJ m 8.37 3.9281 16.0974 0.6426
NOD/ShiLtJ f 20.6183 3.0002 26.5202 14.7164
NOD/ShiLtJ m 13.0075 3.0002 18.9094 7.1056
NZB/BlNJ f 14.1633 4.2429 22.5099 5.8168
NZB/BlNJ m 15.0117 3.0002 20.9136 9.1098
PERA/EiJ f 17.9 3.2865 24.3652 11.4348
PERA/EiJ m 14.5255 3.1336 20.6898 8.3611
PL/J f 19.9967 3.0002 25.8986 14.0948
PL/J m 19.9325 3.6744 27.1608 12.7042
SJL/J f 14.245 3.6744 21.4733 7.0167
SJL/J m 18.656 3.2865 25.1212 12.1908
SM/J f 20.48 2.7776 25.9441 15.0159
SM/J m 20.47 3.6744 27.6983 13.2417
SPRET/EiJ f 11.13 4.2429 19.4766 2.7834
SPRET/EiJ m 4.12 7.3488 18.5767 0.0
SWR/J f 24.8 3.4643 31.6149 17.9851
SWR/J m 24.844 3.2865 31.3092 18.3788


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 23.5883 2.5608 28.6259 18.5506
A/J both 7.5106 2.5982 12.6218 2.3994
AKR/J both 7.6031 2.5982 12.7143 2.4919
BALB/cByJ both 15.7693 2.4649 20.6182 10.9203
BTBR T+ Itpr3tf/J both 29.3542 2.766 34.7955 23.9129
C3H/HeJ both 14.6262 2.5982 19.7374 9.5151
C57BL/6J both 18.6985 2.4649 23.5474 13.8496
C57L/J both 12.1948 2.6834 17.4737 6.916
C58/J both 17.4176 2.4649 22.2665 12.5687
CAST/EiJ both 20.8167 2.525 25.7839 15.8495
DBA/2J both 8.4288 2.5982 13.5399 3.3176
FVB/NJ both 18.7122 2.2705 23.1787 14.2457
MOLF/EiJ both 8.74 2.6894 14.0306 3.4494
NOD/ShiLtJ both 16.8129 2.1214 20.9862 12.6396
NZB/BlNJ both 14.5875 2.5982 19.6987 9.4763
PERA/EiJ both 16.2127 2.2705 20.6792 11.7462
PL/J both 19.9646 2.3718 24.6304 15.2987
SJL/J both 16.4505 2.4649 21.2994 11.6016
SM/J both 20.475 2.3031 25.0056 15.9444
SPRET/EiJ both 7.625 4.2429 15.9716 0.0
SWR/J both 24.822 2.3876 29.5189 20.1251




  GWAS USING LINEAR MIXED MODELS