Project measure / variable:   Wahlsten1   pct_thigmotaxia

ID, description, units MPD:10831   pct_thigmotaxia   percentage of 5 min spent within 10 cm of wall   [%]  
Data set, strains Wahlsten1   inbred   21 strains     sex: both     age: 9wks
Procedure open field test
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  STRAIN COMPARISON PLOT
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Wahlsten1 - percentage of 5 min spent within 10 cm of wall



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested21 strains21 strains
Mean of the strain means78.4   % 78.8   %
Median of the strain means77.8   % 79.4   %
SD of the strain means± 7.55 ± 6.23
Coefficient of variation (CV)0.0963 0.0790
Min–max range of strain means63.7   –   92.4   % 61.4   –   88.0   %
Mean sample size per strain9.7   mice 9.3   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 117.8619 117.8619 1.6149 0.2046
strain 20 15668.9637 783.4482 10.7342 < 0.0001
sex:strain 20 1621.7651 81.0883 1.111 0.3355
Residuals 354 25837.1143 72.9862


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 72.8 17.8   10 5.63 0.245 50.6, 94.4 -0.75
129S1/SvImJ m 77.0 10.6   10 3.36 0.138 56.7, 88.5 -0.3
A/J f 92.4 5.7   8 2.02 0.0617 83.1, 98.7 1.85
A/J m 88.0 10.0   9 3.34 0.114 72.6, 98.1 1.47
AKR/J f 75.4 14.3   10 4.51 0.189 36.4, 86.8 -0.4
AKR/J m 72.5 2.63   8 0.929 0.0363 69.1, 75.6 -1.02
BALB/cByJ f 80.2 6.03   10 1.91 0.0751 69.8, 89.7 0.23
BALB/cByJ m 76.5 10.5   10 3.33 0.138 59.9, 91.9 -0.38
BTBR T+ Itpr3tf/J f 78.2 9.97   12 2.88 0.127 55.9, 92.4 -0.03
BTBR T+ Itpr3tf/J m 77.3 7.6   6 3.1 0.0984 69.6, 88.3 -0.25
C3H/HeJ f 78.8 9.04   10 2.86 0.115 64.8, 91.3 0.05
C3H/HeJ m 79.6 9.34   8 3.3 0.117 66.5, 90.0 0.12
C57BL/6J f 74.6 9.62   8 3.4 0.129 58.2, 85.8 -0.51
C57BL/6J m 74.2 6.62   10 2.09 0.0893 63.5, 84.8 -0.74
C57L/J f 63.7 8.33   10 2.64 0.131 48.3, 74.6 -1.95
C57L/J m 61.4 7.52   8 2.66 0.122 48.7, 70.8 -2.8
C58/J f 66.8 16.0   10 5.06 0.24 29.6, 81.5 -1.54
C58/J m 72.9 13.1   10 4.13 0.179 43.9, 84.1 -0.95
CAST/EiJ f 88.7 6.19   10 1.96 0.0697 73.3, 96.6 1.36
CAST/EiJ m 88.0 3.23   9 1.08 0.0367 82.7, 93.6 1.47
DBA/2J f 83.8 6.47   10 2.04 0.0771 69.6, 94.2 0.71
DBA/2J m 83.7 3.53   8 1.25 0.0421 78.2, 88.7 0.78
FVB/NJ f 75.7 6.21   10 1.96 0.0821 65.2, 85.1 -0.36
FVB/NJ m 72.2 9.76   11 2.94 0.135 47.4, 81.2 -1.07
MOLF/EiJ f 85.7 4.14   8 1.46 0.0483 81.7, 93.4 0.96
MOLF/EiJ m 85.3 7.07   7 2.67 0.0829 70.0, 91.2 1.04
NOD/ShiLtJ f 67.2 11.2   12 3.22 0.166 38.7, 77.4 -1.49
NOD/ShiLtJ m 76.6 3.96   12 1.14 0.0517 69.1, 81.4 -0.36
NZB/BlNJ f 87.9 3.06   6 1.25 0.0348 82.2, 91.2 1.25
NZB/BlNJ m 85.5 5.41   12 1.56 0.0633 74.6, 93.8 1.07
PERA/EiJ f 77.8 11.1   10 3.5 0.142 53.5, 88.7 -0.08
PERA/EiJ m 83.3 7.24   12 2.09 0.0869 70.4, 93.2 0.72
PL/J f 75.7 6.02   12 1.74 0.0795 63.3, 83.4 -0.36
PL/J m 82.2 5.05   7 1.91 0.0615 73.9, 89.2 0.54
SJL/J f 82.6 4.01   8 1.42 0.0486 76.1, 89.5 0.55
SJL/J m 80.5 6.41   12 1.85 0.0797 72.6, 92.2 0.27
SM/J f 76.1 5.09   14 1.36 0.0668 64.4, 85.0 -0.31
SM/J m 79.4 8.84   10 2.8 0.111 67.2, 92.9 0.09
SPRET/EiJ f 87.6 7.09   7 2.68 0.081 77.5, 95.8 1.21
SPRET/EiJ m 80.2 6.01   2   4.25 0.075 75.9, 84.4 0.22
SWR/J f 75.5 5.7   10 1.8 0.0754 67.9, 83.4 -0.39
SWR/J m 79.3 3.61   10 1.14 0.0455 74.2, 83.4 0.07


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 72.77 2.7016 78.0832 67.4568
129S1/SvImJ m 76.97 2.7016 82.2832 71.6568
A/J f 92.4 3.0205 98.3403 86.4597
A/J m 88.0444 2.8477 93.645 82.4438
AKR/J f 75.38 2.7016 80.6932 70.0668
AKR/J m 72.4875 3.0205 78.4278 66.5472
BALB/cByJ f 80.24 2.7016 85.5532 74.9268
BALB/cByJ m 76.53 2.7016 81.8432 71.2168
BTBR T+ Itpr3tf/J f 78.2167 2.4662 83.0669 73.3664
BTBR T+ Itpr3tf/J m 77.2833 3.4877 84.1426 70.424
C3H/HeJ f 78.83 2.7016 84.1432 73.5168
C3H/HeJ m 79.5875 3.0205 85.5278 73.6472
C57BL/6J f 74.6375 3.0205 80.5778 68.6972
C57BL/6J m 74.18 2.7016 79.4932 68.8668
C57L/J f 63.73 2.7016 69.0432 58.4168
C57L/J m 61.4375 3.0205 67.3778 55.4972
C58/J f 66.79 2.7016 72.1032 61.4768
C58/J m 72.92 2.7016 78.2332 67.6068
CAST/EiJ f 88.72 2.7016 94.0332 83.4068
CAST/EiJ m 87.9778 2.8477 93.5784 82.3772
DBA/2J f 83.85 2.7016 89.1632 78.5368
DBA/2J m 83.7125 3.0205 89.6528 77.7722
FVB/NJ f 75.67 2.7016 80.9832 70.3568
FVB/NJ m 72.2 2.5759 77.2659 67.1341
MOLF/EiJ f 85.7125 3.0205 91.6528 79.7722
MOLF/EiJ m 85.3429 3.229 91.6933 78.9924
NOD/ShiLtJ f 67.175 2.4662 72.0253 62.3247
NOD/ShiLtJ m 76.5917 2.4662 81.4419 71.7414
NZB/BlNJ f 87.9167 3.4877 94.776 81.0574
NZB/BlNJ m 85.5167 2.4662 90.3669 80.6664
PERA/EiJ f 77.82 2.7016 83.1332 72.5068
PERA/EiJ m 83.325 2.4662 88.1753 78.4747
PL/J f 75.7333 2.4662 80.5836 70.8831
PL/J m 82.1571 3.229 88.5076 75.8067
SJL/J f 82.5875 3.0205 88.5278 76.6472
SJL/J m 80.5 2.4662 85.3503 75.6497
SM/J f 76.1357 2.2833 80.6262 71.6452
SM/J m 79.36 2.7016 84.6732 74.0468
SPRET/EiJ f 87.6 3.229 93.9505 81.2495
SPRET/EiJ m 80.15 6.041 92.0307 68.2693
SWR/J f 75.55 2.7016 80.8632 70.2368
SWR/J m 79.3 2.7016 84.6132 73.9868


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 74.87 1.9103 78.627 71.113
A/J both 90.2222 2.0756 94.3043 86.1401
AKR/J both 73.9337 2.0262 77.9186 69.9489
BALB/cByJ both 78.385 1.9103 82.142 74.628
BTBR T+ Itpr3tf/J both 77.75 2.1358 81.9505 73.5495
C3H/HeJ both 79.2087 2.0262 83.1936 75.2239
C57BL/6J both 74.4087 2.0262 78.3936 70.4239
C57L/J both 62.5837 2.0262 66.5686 58.5989
C58/J both 69.855 1.9103 73.612 66.098
CAST/EiJ both 88.3489 1.9627 92.2088 84.4889
DBA/2J both 83.7812 2.0262 87.7661 79.7964
FVB/NJ both 73.935 1.8664 77.6056 70.2644
MOLF/EiJ both 85.5277 2.2108 89.8756 81.1798
NOD/ShiLtJ both 71.8833 1.7439 75.313 68.4537
NZB/BlNJ both 86.7167 2.1358 90.9171 82.5162
PERA/EiJ both 80.5725 1.829 84.1696 76.9754
PL/J both 78.9452 2.0316 82.9407 74.9498
SJL/J both 81.5437 1.9497 85.3782 77.7093
SM/J both 77.7479 1.7686 81.2262 74.2696
SPRET/EiJ both 83.875 3.4249 90.6107 77.1393
SWR/J both 77.425 1.9103 81.182 73.668




  GWAS USING LINEAR MIXED MODELS