Project measure / variable:   Wahlsten1   dist_OFT_min5

ID, description, units MPD:10824   dist_OFT_min5   distance traveled in 1 min   [cm]  during minute 5  
Data set, strains Wahlsten1   inbred   21 strains     sex: both     age: 9wks
Procedure open field test
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  STRAIN COMPARISON PLOT
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Wahlsten1 - distance traveled in 1 min during minute 5



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested21 strains21 strains
Mean of the strain means424   cm 402   cm
Median of the strain means437   cm 425   cm
SD of the strain means± 140 ± 155
Coefficient of variation (CV)0.331 0.386
Min–max range of strain means181   –   719   cm 139   –   704   cm
Mean sample size per strain9.7   mice 9.3   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 52669.4459 52669.4459 2.3252 0.1282
strain 20 8015886.3949 400794.3197 17.6938 < 0.0001
sex:strain 20 501400.6665 25070.0333 1.1068 0.3399
Residuals 354 8018673.5615 22651.6202


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 198.0 98.8   10 31.3 0.499 57.3, 314.0 -1.61
129S1/SvImJ m 153.0 60.8   10 19.2 0.398 59.8, 221.0 -1.6
A/J f 181.0 68.5   8 24.2 0.379 41.2, 260.0 -1.73
A/J m 139.0 72.8   9 24.3 0.524 24.8, 235.0 -1.69
AKR/J f 482.0 142.0   10 44.8 0.294 284.0, 720.0 0.41
AKR/J m 470.0 99.1   8 35.0 0.211 346.0, 665.0 0.44
BALB/cByJ f 452.0 56.0   10 17.7 0.124 375.0, 530.0 0.2
BALB/cByJ m 486.0 254.0   10 80.2 0.522 371.0, 1202.0 0.54
BTBR T+ Itpr3tf/J f 374.0 131.0   12 37.8 0.35 146.0, 557.0 -0.36
BTBR T+ Itpr3tf/J m 369.0 99.5   6 40.6 0.27 283.0, 545.0 -0.21
C3H/HeJ f 243.0 55.7   10 17.6 0.229 146.0, 333.0 -1.29
C3H/HeJ m 226.0 64.6   8 22.8 0.286 143.0, 335.0 -1.13
C57BL/6J f 616.0 135.0   8 47.7 0.219 385.0, 770.0 1.37
C57BL/6J m 481.0 190.0   10 60.2 0.395 282.0, 954.0 0.51
C57L/J f 507.0 70.1   10 22.2 0.138 411.0, 604.0 0.59
C57L/J m 541.0 152.0   8 53.8 0.282 336.0, 823.0 0.89
C58/J f 719.0 325.0   10 103.0 0.452 276.0, 1151.0 2.1
C58/J m 694.0 211.0   10 66.7 0.304 260.0, 973.0 1.88
CAST/EiJ f 456.0 283.0   10 89.5 0.621 47.5, 1092.0 0.23
CAST/EiJ m 425.0 129.0   9 43.0 0.304 285.0, 732.0 0.15
DBA/2J f 294.0 134.0   10 42.3 0.455 113.0, 535.0 -0.93
DBA/2J m 320.0 135.0   8 47.8 0.423 58.1, 482.0 -0.53
FVB/NJ f 537.0 83.4   10 26.4 0.155 329.0, 634.0 0.8
FVB/NJ m 574.0 119.0   11 35.8 0.207 281.0, 699.0 1.11
MOLF/EiJ f 415.0 204.0   8 72.3 0.492 25.2, 668.0 -0.07
MOLF/EiJ m 449.0 242.0   7 91.4 0.538 192.0, 950.0 0.3
NOD/ShiLtJ f 585.0 152.0   12 44.0 0.26 410.0, 886.0 1.14
NOD/ShiLtJ m 704.0 176.0   12 50.8 0.25 487.0, 1077.0 1.94
NZB/BlNJ f 392.0 95.9   6 39.2 0.244 234.0, 484.0 -0.23
NZB/BlNJ m 308.0 156.0   12 45.0 0.506 17.2, 568.0 -0.61
PERA/EiJ f 404.0 160.0   10 50.6 0.395 231.0, 753.0 -0.15
PERA/EiJ m 216.0 171.0   12 49.3 0.789 31.7, 637.0 -1.2
PL/J f 539.0 175.0   12 50.5 0.325 327.0, 898.0 0.82
PL/J m 458.0 116.0   7 43.9 0.254 321.0, 665.0 0.36
SJL/J f 438.0 96.0   8 33.9 0.219 311.0, 596.0 0.1
SJL/J m 315.0 120.0   12 34.7 0.382 141.0, 530.0 -0.56
SM/J f 423.0 79.0   14 21.1 0.187 248.0, 569.0 -0.01
SM/J m 387.0 169.0   10 53.4 0.437 25.3, 579.0 -0.1
SPRET/EiJ f 220.0 117.0   7 44.3 0.533 42.3, 333.0 -1.46
SPRET/EiJ m 298.0 186.0   2   132.0 0.623 167.0, 430.0 -0.67
SWR/J f 437.0 83.9   10 26.5 0.192 318.0, 620.0 0.09
SWR/J m 432.0 71.6   10 22.6 0.166 349.0, 574.0 0.19


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 198.21 47.5937 291.812 104.608
129S1/SvImJ m 152.97 47.5937 246.572 59.368
A/J f 180.525 53.2114 285.1752 75.8748
A/J m 139.0778 50.1682 237.7429 40.4126
AKR/J f 482.0 47.5937 575.602 388.398
AKR/J m 470.0 53.2114 574.6502 365.3498
BALB/cByJ f 451.6 47.5937 545.202 357.998
BALB/cByJ m 485.7 47.5937 579.302 392.098
BTBR T+ Itpr3tf/J f 373.5833 43.4469 459.0299 288.1368
BTBR T+ Itpr3tf/J m 369.1667 61.4432 490.0063 248.327
C3H/HeJ f 243.3 47.5937 336.902 149.698
C3H/HeJ m 226.0 53.2114 330.6502 121.3498
C57BL/6J f 616.5 53.2114 721.1502 511.8498
C57BL/6J m 481.2 47.5937 574.802 387.598
C57L/J f 506.7 47.5937 600.302 413.098
C57L/J m 541.0 53.2114 645.6502 436.3498
C58/J f 719.3 47.5937 812.902 625.698
C58/J m 693.6 47.5937 787.202 599.998
CAST/EiJ f 455.85 47.5937 549.452 362.248
CAST/EiJ m 425.1111 50.1682 523.7763 326.446
DBA/2J f 294.1 47.5937 387.702 200.498
DBA/2J m 319.8875 53.2114 424.5377 215.2373
FVB/NJ f 536.7 47.5937 630.302 443.098
FVB/NJ m 573.5455 45.3788 662.7915 484.2995
MOLF/EiJ f 415.275 53.2114 519.9252 310.6248
MOLF/EiJ m 449.1429 56.8854 561.0186 337.2671
NOD/ShiLtJ f 585.25 43.4469 670.6965 499.8035
NOD/ShiLtJ m 704.5 43.4469 789.9465 619.0535
NZB/BlNJ f 392.3333 61.4432 513.173 271.4937
NZB/BlNJ m 308.1 43.4469 393.5465 222.6535
PERA/EiJ f 404.5 47.5937 498.102 310.898
PERA/EiJ m 216.3833 43.4469 301.8299 130.9368
PL/J f 538.75 43.4469 624.1965 453.3035
PL/J m 457.5714 56.8854 569.4472 345.6957
SJL/J f 438.125 53.2114 542.7752 333.4748
SJL/J m 315.0 43.4469 400.4465 229.5535
SM/J f 423.4286 40.224 502.5367 344.3205
SM/J m 386.53 47.5937 480.132 292.928
SPRET/EiJ f 219.9 56.8854 331.7758 108.0242
SPRET/EiJ m 298.5 106.4228 507.8004 89.1996
SWR/J f 437.0 47.5937 530.602 343.398
SWR/J m 432.2 47.5937 525.802 338.598


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 175.59 33.6538 241.7766 109.4034
A/J both 159.8014 36.566 231.7154 87.8874
AKR/J both 476.0 35.6953 546.2015 405.7985
BALB/cByJ both 468.65 33.6538 534.8366 402.4634
BTBR T+ Itpr3tf/J both 371.375 37.6261 445.3739 297.3761
C3H/HeJ both 234.65 35.6953 304.8515 164.4485
C57BL/6J both 548.85 35.6953 619.0515 478.6485
C57L/J both 523.85 35.6953 594.0515 453.6485
C58/J both 706.45 33.6538 772.6366 640.2634
CAST/EiJ both 440.4806 34.576 508.4808 372.4803
DBA/2J both 306.9937 35.6953 377.1952 236.7923
FVB/NJ both 555.1227 32.8801 619.7876 490.4579
MOLF/EiJ both 432.2089 38.9468 508.805 355.6128
NOD/ShiLtJ both 644.875 30.7216 705.2948 584.4552
NZB/BlNJ both 350.2167 37.6261 424.2155 276.2178
PERA/EiJ both 310.4417 32.2211 373.8105 247.0728
PL/J both 498.1607 35.7896 568.5477 427.7737
SJL/J both 376.5625 34.3478 444.1139 309.0111
SM/J both 404.9793 31.1574 466.2562 343.7024
SPRET/EiJ both 259.2 60.3361 377.8622 140.5378
SWR/J both 434.6 33.6538 500.7866 368.4134




  GWAS USING LINEAR MIXED MODELS