Project measure / variable:   Wahlsten1   dist_OFT_min4

ID, description, units MPD:10823   dist_OFT_min4   distance traveled in 1 min   [cm]  during minute 4  
Data set, strains Wahlsten1   inbred   21 strains     sex: both     age: 9wks
Procedure open field test
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  STRAIN COMPARISON PLOT
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Wahlsten1 - distance traveled in 1 min during minute 4



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested21 strains21 strains
Mean of the strain means449   cm 432   cm
Median of the strain means469   cm 457   cm
SD of the strain means± 143 ± 156
Coefficient of variation (CV)0.319 0.361
Min–max range of strain means214   –   716   cm 159   –   738   cm
Mean sample size per strain9.7   mice 9.3   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 38386.7397 38386.7397 1.8358 0.1763
strain 20 8441272.0888 422063.6044 20.1847 < 0.0001
sex:strain 20 362602.7487 18130.1374 0.8671 0.6297
Residuals 354 7402163.0631 20910.0652


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 226.0 101.0   10 31.8 0.445 110.0, 401.0 -1.56
129S1/SvImJ m 234.0 92.5   10 29.3 0.396 83.7, 357.0 -1.27
A/J f 214.0 95.3   8 33.7 0.445 28.2, 307.0 -1.64
A/J m 159.0 101.0   9 33.7 0.636 19.7, 313.0 -1.75
AKR/J f 487.0 166.0   10 52.4 0.34 228.0, 832.0 0.27
AKR/J m 468.0 91.0   8 32.2 0.194 374.0, 646.0 0.23
BALB/cByJ f 472.0 68.4   10 21.6 0.145 372.0, 580.0 0.16
BALB/cByJ m 509.0 312.0   10 98.8 0.613 322.0, 1382.0 0.5
BTBR T+ Itpr3tf/J f 442.0 103.0   12 29.6 0.232 289.0, 609.0 -0.05
BTBR T+ Itpr3tf/J m 400.0 117.0   6 47.8 0.293 218.0, 531.0 -0.2
C3H/HeJ f 238.0 63.5   10 20.1 0.267 136.0, 372.0 -1.47
C3H/HeJ m 215.0 102.0   8 36.2 0.476 102.0, 354.0 -1.39
C57BL/6J f 580.0 152.0   8 53.6 0.261 334.0, 815.0 0.92
C57BL/6J m 462.0 81.3   10 25.7 0.176 346.0, 598.0 0.19
C57L/J f 521.0 88.0   10 27.8 0.169 351.0, 673.0 0.5
C57L/J m 543.0 93.6   8 33.1 0.172 446.0, 677.0 0.71
C58/J f 716.0 395.0   10 125.0 0.552 203.0, 1339.0 1.86
C58/J m 726.0 195.0   10 61.6 0.268 458.0, 1075.0 1.89
CAST/EiJ f 469.0 177.0   10 56.1 0.378 252.0, 882.0 0.14
CAST/EiJ m 457.0 140.0   9 46.7 0.307 245.0, 665.0 0.16
DBA/2J f 370.0 119.0   10 37.5 0.32 216.0, 556.0 -0.55
DBA/2J m 330.0 136.0   8 47.9 0.41 59.9, 514.0 -0.65
FVB/NJ f 538.0 105.0   10 33.2 0.195 329.0, 671.0 0.62
FVB/NJ m 640.0 54.3   11 16.4 0.0848 535.0, 733.0 1.34
MOLF/EiJ f 526.0 85.7   8 30.3 0.163 440.0, 651.0 0.54
MOLF/EiJ m 515.0 129.0   7 48.7 0.25 332.0, 679.0 0.53
NOD/ShiLtJ f 700.0 136.0   12 39.2 0.194 533.0, 967.0 1.75
NOD/ShiLtJ m 738.0 144.0   12 41.6 0.195 442.0, 977.0 1.97
NZB/BlNJ f 365.0 135.0   6 55.1 0.369 116.0, 496.0 -0.59
NZB/BlNJ m 372.0 123.0   12 35.5 0.331 133.0, 541.0 -0.38
PERA/EiJ f 349.0 171.0   10 54.2 0.492 118.0, 580.0 -0.7
PERA/EiJ m 235.0 166.0   12 47.9 0.707 6.6, 583.0 -1.26
PL/J f 595.0 171.0   12 49.4 0.288 338.0, 934.0 1.02
PL/J m 483.0 181.0   7 68.4 0.375 178.0, 693.0 0.33
SJL/J f 467.0 74.3   8 26.3 0.159 366.0, 556.0 0.13
SJL/J m 354.0 90.1   12 26.0 0.254 245.0, 572.0 -0.5
SM/J f 491.0 79.4   14 21.2 0.162 350.0, 604.0 0.29
SM/J m 433.0 188.0   10 59.6 0.435 52.9, 743.0 0.01
SPRET/EiJ f 249.0 123.0   7 46.4 0.493 137.0, 511.0 -1.39
SPRET/EiJ m 331.0 52.3   2   37.0 0.158 294.0, 368.0 -0.65
SWR/J f 411.0 65.8   10 20.8 0.16 319.0, 482.0 -0.26
SWR/J m 461.0 84.1   10 26.6 0.182 327.0, 627.0 0.19


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 226.0 45.7275 315.9318 136.0682
129S1/SvImJ m 233.97 45.7275 323.9018 144.0382
A/J f 214.025 51.1249 314.5718 113.4782
A/J m 159.1667 48.201 253.9631 64.3703
AKR/J f 487.0 45.7275 576.9318 397.0682
AKR/J m 468.125 51.1249 568.6718 367.5782
BALB/cByJ f 471.9 45.7275 561.8318 381.9682
BALB/cByJ m 509.3 45.7275 599.2318 419.3682
BTBR T+ Itpr3tf/J f 442.25 41.7433 524.3461 360.1539
BTBR T+ Itpr3tf/J m 400.5 59.034 516.6014 284.3986
C3H/HeJ f 237.6 45.7275 327.5318 147.6682
C3H/HeJ m 215.25 51.1249 315.7968 114.7032
C57BL/6J f 580.375 51.1249 680.9218 479.8282
C57BL/6J m 462.4 45.7275 552.3318 372.4682
C57L/J f 521.0 45.7275 610.9318 431.0682
C57L/J m 543.125 51.1249 643.6718 442.5782
C58/J f 715.6 45.7275 805.5318 625.6682
C58/J m 726.2 45.7275 816.1318 636.2682
CAST/EiJ f 468.7 45.7275 558.6318 378.7682
CAST/EiJ m 456.7778 48.201 551.5742 361.9814
DBA/2J f 370.3 45.7275 460.2318 280.3682
DBA/2J m 330.4875 51.1249 431.0343 229.9407
FVB/NJ f 537.5 45.7275 627.4318 447.5682
FVB/NJ m 640.4545 43.5995 726.2011 554.708
MOLF/EiJ f 525.625 51.1249 626.1718 425.0782
MOLF/EiJ m 515.4286 54.6548 622.9176 407.9395
NOD/ShiLtJ f 700.4167 41.7433 782.5128 618.3206
NOD/ShiLtJ m 737.5833 41.7433 819.6794 655.4872
NZB/BlNJ f 365.3333 59.034 481.4347 249.2319
NZB/BlNJ m 371.6667 41.7433 453.7628 289.5706
PERA/EiJ f 348.8 45.7275 438.7318 258.8682
PERA/EiJ m 234.5917 41.7433 316.6878 152.4956
PL/J f 594.6667 41.7433 676.7628 512.5706
PL/J m 483.2857 54.6548 590.7747 375.7967
SJL/J f 467.125 51.1249 567.6718 366.5782
SJL/J m 354.3333 41.7433 436.4294 272.2372
SM/J f 491.3571 38.6468 567.3634 415.3509
SM/J m 432.89 45.7275 522.8218 342.9582
SPRET/EiJ f 249.2857 54.6548 356.7747 141.7967
SPRET/EiJ m 331.0 102.2499 532.0935 129.9065
SWR/J f 411.0 45.7275 500.9318 321.0682
SWR/J m 461.2 45.7275 551.1318 371.2682


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 229.985 32.3342 293.5764 166.3936
A/J both 186.5958 35.1322 255.69 117.5017
AKR/J both 477.5625 34.2956 545.0113 410.1137
BALB/cByJ both 490.6 32.3342 554.1914 427.0086
BTBR T+ Itpr3tf/J both 421.375 36.1508 492.4723 350.2777
C3H/HeJ both 226.425 34.2956 293.8738 158.9762
C57BL/6J both 521.3875 34.2956 588.8363 453.9387
C57L/J both 532.0625 34.2956 599.5113 464.6137
C58/J both 720.9 32.3342 784.4914 657.3086
CAST/EiJ both 462.7389 33.2203 528.0728 397.405
DBA/2J both 350.3937 34.2956 417.8426 282.9449
FVB/NJ both 588.9773 31.5908 651.1066 526.848
MOLF/EiJ both 520.5268 37.4196 594.1195 446.9341
NOD/ShiLtJ both 719.0 29.517 777.0507 660.9493
NZB/BlNJ both 368.5 36.1508 439.5973 297.4027
PERA/EiJ both 291.6958 30.9577 352.5799 230.8117
PL/J both 538.9762 34.3863 606.6032 471.3492
SJL/J both 410.7292 33.001 475.6318 345.8265
SM/J both 462.1236 29.9357 520.9977 403.2494
SPRET/EiJ both 290.1429 57.9702 404.1522 176.1335
SWR/J both 436.1 32.3342 499.6914 372.5086




  GWAS USING LINEAR MIXED MODELS