Project measure / variable:   Wahlsten1   dist_OFT_min2

ID, description, units MPD:10821   dist_OFT_min2   distance traveled in 1 min   [cm]  during minute 2  
Data set, strains Wahlsten1   inbred   21 strains     sex: both     age: 9wks
Procedure open field test
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  STRAIN COMPARISON PLOT
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Wahlsten1 - distance traveled in 1 min during minute 2



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested21 strains21 strains
Mean of the strain means519   cm 498   cm
Median of the strain means567   cm 492   cm
SD of the strain means± 181 ± 174
Coefficient of variation (CV)0.349 0.348
Min–max range of strain means177   –   824   cm 149   –   926   cm
Mean sample size per strain9.7   mice 9.3   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 97738.8936 97738.8936 3.7859 0.0525
strain 20 11456439.5829 572821.9791 22.1884 < 0.0001
sex:strain 20 720859.8069 36042.9903 1.3961 0.1204
Residuals 354 9138948.9208 25816.2399


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 297.0 126.0   10 39.8 0.423 159.0, 492.0 -1.23
129S1/SvImJ m 299.0 114.0   10 35.9 0.38 86.8, 460.0 -1.15
A/J f 177.0 90.2   8 31.9 0.509 47.9, 341.0 -1.89
A/J m 149.0 83.1   9 27.7 0.559 23.0, 263.0 -2.01
AKR/J f 506.0 148.0   10 46.8 0.292 353.0, 741.0 -0.07
AKR/J m 611.0 230.0   8 81.3 0.376 402.0, 1142.0 0.65
BALB/cByJ f 567.0 119.0   10 37.7 0.21 276.0, 694.0 0.27
BALB/cByJ m 480.0 211.0   10 66.7 0.439 180.0, 987.0 -0.11
BTBR T+ Itpr3tf/J f 602.0 183.0   12 52.9 0.304 192.0, 828.0 0.46
BTBR T+ Itpr3tf/J m 615.0 64.3   6 26.3 0.105 542.0, 724.0 0.67
C3H/HeJ f 255.0 62.4   10 19.7 0.245 158.0, 346.0 -1.46
C3H/HeJ m 195.0 94.0   8 33.2 0.482 59.5, 353.0 -1.75
C57BL/6J f 705.0 153.0   8 54.1 0.217 468.0, 892.0 1.03
C57BL/6J m 560.0 226.0   10 71.6 0.404 242.0, 980.0 0.35
C57L/J f 737.0 116.0   10 36.8 0.158 490.0, 874.0 1.21
C57L/J m 722.0 150.0   8 53.1 0.208 390.0, 868.0 1.29
C58/J f 729.0 349.0   10 111.0 0.479 254.0, 1377.0 1.16
C58/J m 579.0 234.0   10 74.0 0.404 279.0, 1062.0 0.46
CAST/EiJ f 484.0 169.0   10 53.5 0.35 303.0, 886.0 -0.19
CAST/EiJ m 401.0 97.9   9 32.6 0.244 232.0, 551.0 -0.56
DBA/2J f 331.0 163.0   10 51.7 0.494 68.9, 647.0 -1.04
DBA/2J m 368.0 144.0   8 50.9 0.391 77.8, 510.0 -0.75
FVB/NJ f 568.0 88.6   10 28.0 0.156 461.0, 732.0 0.27
FVB/NJ m 629.0 133.0   11 40.1 0.212 407.0, 875.0 0.75
MOLF/EiJ f 615.0 124.0   8 43.8 0.202 480.0, 838.0 0.53
MOLF/EiJ m 539.0 124.0   7 46.7 0.229 353.0, 728.0 0.23
NOD/ShiLtJ f 824.0 230.0   12 66.5 0.279 507.0, 1233.0 1.69
NOD/ShiLtJ m 926.0 132.0   12 38.2 0.143 785.0, 1208.0 2.46
NZB/BlNJ f 482.0 89.5   6 36.5 0.186 333.0, 598.0 -0.2
NZB/BlNJ m 448.0 177.0   12 51.0 0.394 234.0, 853.0 -0.29
PERA/EiJ f 405.0 127.0   10 40.2 0.314 188.0, 576.0 -0.63
PERA/EiJ m 380.0 171.0   12 49.5 0.451 183.0, 750.0 -0.68
PL/J f 648.0 219.0   12 63.3 0.338 393.0, 1231.0 0.71
PL/J m 539.0 105.0   7 39.7 0.195 432.0, 704.0 0.23
SJL/J f 464.0 112.0   8 39.5 0.241 302.0, 619.0 -0.3
SJL/J m 437.0 155.0   12 44.9 0.355 256.0, 749.0 -0.35
SM/J f 662.0 115.0   14 30.7 0.173 448.0, 841.0 0.79
SM/J m 488.0 258.0   10 81.5 0.528 30.3, 910.0 -0.06
SPRET/EiJ f 235.0 91.9   7 34.7 0.391 128.0, 353.0 -1.57
SPRET/EiJ m 492.0 19.8   2   14.0 0.0402 478.0, 506.0 -0.04
SWR/J f 603.0 91.5   10 28.9 0.152 490.0, 760.0 0.46
SWR/J m 610.0 75.8   10 24.0 0.124 477.0, 733.0 0.64


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 297.0 50.8097 396.9268 197.0732
129S1/SvImJ m 299.18 50.8097 399.1068 199.2532
A/J f 177.1125 56.807 288.834 65.391
A/J m 148.6111 53.5581 253.9432 43.279
AKR/J f 505.9 50.8097 605.8268 405.9732
AKR/J m 611.125 56.807 722.8465 499.4035
BALB/cByJ f 566.7 50.8097 666.6268 466.7732
BALB/cByJ m 480.0 50.8097 579.9268 380.0732
BTBR T+ Itpr3tf/J f 602.25 46.3827 693.4703 511.0297
BTBR T+ Itpr3tf/J m 615.3333 65.595 744.3383 486.3284
C3H/HeJ f 254.8 50.8097 354.7268 154.8732
C3H/HeJ m 195.3 56.807 307.0215 83.5785
C57BL/6J f 704.75 56.807 816.4715 593.0285
C57BL/6J m 560.0 50.8097 659.9268 460.0732
C57L/J f 736.9 50.8097 836.8268 636.9732
C57L/J m 722.0 56.807 833.7215 610.2785
C58/J f 729.4 50.8097 829.3268 629.4732
C58/J m 579.4 50.8097 679.3268 479.4732
CAST/EiJ f 484.3 50.8097 584.2268 384.3732
CAST/EiJ m 401.2222 53.5581 506.5543 295.8901
DBA/2J f 330.99 50.8097 430.9168 231.0632
DBA/2J m 368.475 56.807 480.1965 256.7535
FVB/NJ f 567.9 50.8097 667.8268 467.9732
FVB/NJ m 629.4545 48.4451 724.731 534.1781
MOLF/EiJ f 614.875 56.807 726.5965 503.1535
MOLF/EiJ m 538.7143 60.7292 658.1496 419.2789
NOD/ShiLtJ f 824.1667 46.3827 915.3869 732.9464
NOD/ShiLtJ m 926.4167 46.3827 1017.6369 835.1964
NZB/BlNJ f 481.5 65.595 610.5049 352.4951
NZB/BlNJ m 448.25 46.3827 539.4703 357.0297
PERA/EiJ f 404.7 50.8097 504.6268 304.7732
PERA/EiJ m 380.0833 46.3827 471.3036 288.8631
PL/J f 648.25 46.3827 739.4703 557.0297
PL/J m 539.2857 60.7292 658.7211 419.8504
SJL/J f 464.375 56.807 576.0965 352.6535
SJL/J m 437.4167 46.3827 528.6369 346.1964
SM/J f 662.5 42.942 746.9536 578.0464
SM/J m 487.83 50.8097 587.7568 387.9032
SPRET/EiJ f 234.8571 60.7292 354.2925 115.4218
SPRET/EiJ m 492.0 113.6139 715.4431 268.5569
SWR/J f 602.6 50.8097 702.5268 502.6732
SWR/J m 610.2 50.8097 710.1268 510.2732


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 298.09 35.9279 368.7489 227.4311
A/J both 162.8618 39.0368 239.6351 86.0885
AKR/J both 558.5125 38.1073 633.4576 483.5674
BALB/cByJ both 523.35 35.9279 594.0089 452.6911
BTBR T+ Itpr3tf/J both 608.7917 40.1686 687.7907 529.7926
C3H/HeJ both 225.05 38.1073 299.9951 150.1049
C57BL/6J both 632.375 38.1073 707.3201 557.4299
C57L/J both 729.45 38.1073 804.3951 654.5049
C58/J both 654.4 35.9279 725.0589 583.7411
CAST/EiJ both 442.7611 36.9124 515.3562 370.166
DBA/2J both 349.7325 38.1073 424.6776 274.7874
FVB/NJ both 598.6773 35.1018 667.7116 529.6429
MOLF/EiJ both 576.7946 41.5784 658.5664 495.0228
NOD/ShiLtJ both 875.2917 32.7975 939.7941 810.7892
NZB/BlNJ both 464.875 40.1686 543.8741 385.8759
PERA/EiJ both 392.3917 34.3983 460.0424 324.7409
PL/J both 593.7679 38.2079 668.911 518.6248
SJL/J both 450.8958 36.6687 523.0118 378.7799
SM/J both 575.165 33.2627 640.5824 509.7476
SPRET/EiJ both 363.4286 64.413 490.1089 236.7482
SWR/J both 606.4 35.9279 677.0589 535.7411




  GWAS USING LINEAR MIXED MODELS