Project measure / variable:   Wahlsten1   dist_OFT_min1

ID, description, units MPD:10820   dist_OFT_min1   distance traveled in 1 min   [cm]  during minute 1  
Data set, strains Wahlsten1   inbred   21 strains     sex: both     age: 9wks
Procedure open field test
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  STRAIN COMPARISON PLOT
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Wahlsten1 - distance traveled in 1 min during minute 1



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested21 strains21 strains
Mean of the strain means528   cm 521   cm
Median of the strain means559   cm 509   cm
SD of the strain means± 173 ± 179
Coefficient of variation (CV)0.327 0.343
Min–max range of strain means220   –   832   cm 184   –   933   cm
Mean sample size per strain9.7   mice 9.3   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 57523.3129 57523.3129 2.0228 0.1558
strain 20 11506271.6366 575313.5818 20.231 < 0.0001
sex:strain 20 629842.1234 31492.1062 1.1074 0.3392
Residuals 354 10066778.9435 28437.2287


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 314.0 210.0   10 66.3 0.668 92.1, 726.0 -1.24
129S1/SvImJ m 219.0 93.5   10 29.6 0.426 83.7, 319.0 -1.69
A/J f 220.0 84.4   8 29.8 0.383 83.2, 333.0 -1.79
A/J m 184.0 77.1   9 25.7 0.419 62.6, 284.0 -1.88
AKR/J f 593.0 159.0   10 50.2 0.268 380.0, 903.0 0.37
AKR/J m 543.0 67.9   8 24.0 0.125 450.0, 665.0 0.12
BALB/cByJ f 489.0 87.1   10 27.5 0.178 338.0, 606.0 -0.23
BALB/cByJ m 517.0 195.0   10 61.8 0.378 306.0, 998.0 -0.02
BTBR T+ Itpr3tf/J f 808.0 230.0   12 66.3 0.284 341.0, 1051.0 1.62
BTBR T+ Itpr3tf/J m 813.0 150.0   6 61.1 0.184 583.0, 1032.0 1.64
C3H/HeJ f 409.0 86.1   10 27.2 0.21 283.0, 574.0 -0.69
C3H/HeJ m 400.0 48.0   8 17.0 0.12 363.0, 508.0 -0.67
C57BL/6J f 719.0 101.0   8 35.6 0.14 532.0, 873.0 1.1
C57BL/6J m 621.0 150.0   10 47.6 0.242 376.0, 906.0 0.56
C57L/J f 682.0 136.0   10 43.0 0.2 463.0, 983.0 0.89
C57L/J m 725.0 162.0   8 57.2 0.223 495.0, 933.0 1.14
C58/J f 630.0 309.0   10 97.7 0.49 173.0, 1060.0 0.59
C58/J m 509.0 208.0   10 65.8 0.409 40.2, 866.0 -0.07
CAST/EiJ f 568.0 116.0   10 36.5 0.203 332.0, 716.0 0.23
CAST/EiJ m 542.0 111.0   9 37.0 0.205 308.0, 703.0 0.12
DBA/2J f 347.0 205.0   10 64.9 0.591 83.7, 569.0 -1.05
DBA/2J m 418.0 165.0   8 58.4 0.395 92.0, 648.0 -0.57
FVB/NJ f 559.0 93.9   10 29.7 0.168 486.0, 788.0 0.18
FVB/NJ m 636.0 91.7   11 27.7 0.144 514.0, 829.0 0.65
MOLF/EiJ f 490.0 219.0   8 77.4 0.447 298.0, 897.0 -0.22
MOLF/EiJ m 487.0 241.0   7 91.2 0.496 72.2, 891.0 -0.19
NOD/ShiLtJ f 832.0 265.0   12 76.4 0.318 103.0, 1059.0 1.76
NOD/ShiLtJ m 933.0 203.0   12 58.6 0.218 662.0, 1256.0 2.31
NZB/BlNJ f 463.0 100.0   6 40.9 0.216 381.0, 634.0 -0.38
NZB/BlNJ m 480.0 202.0   12 58.4 0.421 122.0, 787.0 -0.23
PERA/EiJ f 271.0 172.0   10 54.3 0.634 -1.49
PERA/EiJ m 320.0 152.0   12 43.9 0.476 17.9, 619.0 -1.12
PL/J f 580.0 145.0   12 42.0 0.251 401.0, 799.0 0.3
PL/J m 562.0 111.0   7 42.0 0.198 430.0, 763.0 0.23
SJL/J f 433.0 128.0   8 45.2 0.295 240.0, 617.0 -0.55
SJL/J m 445.0 213.0   12 61.5 0.479 56.9, 941.0 -0.42
SM/J f 624.0 166.0   14 44.5 0.267 348.0, 842.0 0.55
SM/J m 405.0 253.0   10 79.9 0.624 99.8, 763.0 -0.65
SPRET/EiJ f 350.0 156.0   7 59.0 0.445 93.3, 542.0 -1.03
SPRET/EiJ m 500.0 137.0   2   97.0 0.274 403.0, 597.0 -0.12
SWR/J f 715.0 121.0   10 38.3 0.169 584.0, 980.0 1.08
SWR/J m 675.0 127.0   10 40.1 0.188 443.0, 864.0 0.86


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 313.51 53.3266 418.3867 208.6333
129S1/SvImJ m 219.43 53.3266 324.3067 114.5533
A/J f 220.4 59.6209 337.6557 103.1443
A/J m 184.0667 56.2111 294.6164 73.5169
AKR/J f 592.8 53.3266 697.6767 487.9233
AKR/J m 543.125 59.6209 660.3807 425.8693
BALB/cByJ f 489.2 53.3266 594.0767 384.3233
BALB/cByJ m 517.3 53.3266 622.1767 412.4233
BTBR T+ Itpr3tf/J f 807.75 48.6803 903.4889 712.0111
BTBR T+ Itpr3tf/J m 812.8333 68.8443 948.2286 677.4381
C3H/HeJ f 409.2 53.3266 514.0767 304.3233
C3H/HeJ m 400.25 59.6209 517.5057 282.9943
C57BL/6J f 719.0 59.6209 836.2557 601.7443
C57BL/6J m 620.7 53.3266 725.5767 515.8233
C57L/J f 681.5 53.3266 786.3767 576.6233
C57L/J m 725.375 59.6209 842.6307 608.1193
C58/J f 630.0 53.3266 734.8767 525.1233
C58/J m 508.82 53.3266 613.6967 403.9433
CAST/EiJ f 568.0 53.3266 672.8767 463.1233
CAST/EiJ m 542.1111 56.2111 652.6609 431.5613
DBA/2J f 347.03 53.3266 451.9067 242.1533
DBA/2J m 418.5 59.6209 535.7557 301.2443
FVB/NJ f 558.7 53.3266 663.5767 453.8233
FVB/NJ m 635.5455 50.8449 735.5415 535.5494
MOLF/EiJ f 489.625 59.6209 606.8807 372.3693
MOLF/EiJ m 486.8857 63.7374 612.2374 361.5341
NOD/ShiLtJ f 831.8333 48.6803 927.5722 736.0944
NOD/ShiLtJ m 933.0 48.6803 1028.7389 837.2611
NZB/BlNJ f 463.0 68.8443 598.3953 327.6047
NZB/BlNJ m 480.5 48.6803 576.2389 384.7611
PERA/EiJ f 270.52 53.3266 375.3967 165.6433
PERA/EiJ m 319.9083 48.6803 415.6472 224.1694
PL/J f 579.8333 48.6803 675.5722 484.0944
PL/J m 561.7143 63.7374 687.0659 436.3626
SJL/J f 433.125 59.6209 550.3807 315.8693
SJL/J m 445.075 48.6803 540.8139 349.3361
SM/J f 623.9286 45.0692 712.5656 535.2916
SM/J m 404.98 53.3266 509.8567 300.1033
SPRET/EiJ f 350.3286 63.7374 475.6802 224.9769
SPRET/EiJ m 500.0 119.2418 734.5115 265.4885
SWR/J f 714.6 53.3266 819.4767 609.7233
SWR/J m 674.6 53.3266 779.4767 569.7233


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 266.47 37.7076 340.629 192.311
A/J both 202.2333 40.9706 282.8096 121.657
AKR/J both 567.9625 39.9949 646.62 489.305
BALB/cByJ both 503.25 37.7076 577.409 429.091
BTBR T+ Itpr3tf/J both 810.2917 42.1584 893.204 727.3793
C3H/HeJ both 404.725 39.9949 483.3825 326.0675
C57BL/6J both 669.85 39.9949 748.5075 591.1925
C57L/J both 703.4375 39.9949 782.095 624.78
C58/J both 569.41 37.7076 643.569 495.251
CAST/EiJ both 555.0556 38.7409 631.2467 478.8644
DBA/2J both 382.765 39.9949 461.4225 304.1075
FVB/NJ both 597.1227 36.8406 669.5767 524.6687
MOLF/EiJ both 488.2554 43.638 574.0778 402.4329
NOD/ShiLtJ both 882.4167 34.4222 950.1143 814.719
NZB/BlNJ both 471.75 42.1584 554.6623 388.8377
PERA/EiJ both 295.2142 36.1023 366.216 224.2123
PL/J both 570.7738 40.1006 649.6392 491.9085
SJL/J both 439.1 38.4851 514.7883 363.4117
SM/J both 514.4543 34.9104 583.1122 445.7964
SPRET/EiJ both 425.1643 67.6038 558.1198 292.2088
SWR/J both 694.6 37.7076 768.759 620.441




  GWAS USING LINEAR MIXED MODELS