Zaytseva2: IgG glycome: N-glycan profiles of IgG subclasses in 95 Collaborative Cross strains of mice (2018)

Krištić J, Zaytseva OO, Ram R, Nguyen Q, Novokmet M, Vučković F, Vilaj M, Trbojević-Akmačić I, Pezer M, Davern KM, Morahan G, Lauc G. Profiling and genetic control of the murine immunoglobulin G glycome. Nat Chem Biol. 2018 May;14(5):516-524. doi: 10.1038/s41589-018-0034-3. Epub 2018 Apr 9.   PubMed 29632412  


         
The immunoglobulin IgG glycome was characterized in Collaborative Cross strains originating at Geniad. This project contains data for N-glycan profiles of IgG subclasses in 95 CC strains and Zaytseva1 contains data for glycan levels in 111 CC strains.

Procedures conducted:
• glycosylation profile  IgG subclasses, relative abundance

Zaytseva2 downloads
• Download Zaytseva2 project data set     animal data, as uploaded
• Download Zaytseva2 project data set     animal data, as uploaded
• Download Zaytseva2 animal data matrix     with factor-related expansion applied as necessary
• Download Zaytseva2 strain means, SD, N, etc.     one row per strain/sex/measure
Investigators Olga O Zaytseva       Glycoscience Research Laboratory, Genos Ltd,  Zagreb CROATIA
Jasminka Krištić       Glycoscience Research Laboratory, Genos Ltd,  Zagreb CROATIA
Grant Morahan       Harry Perkins Institute of Medical Research,  Nedlands, Western Australia AUSTRALIA
Gordan Lauc       University of Zagreb,  Zagreb CROATIA
Participants Ram R, Nguyen Q, Novokmet M, Vučković F, Vilaj M, Trbojević-Akmačić I, Pezer M, Davern KM
ContactGordan Lauc     glauc@pharma.hr     Lab web site
AcknowledgementsFunding provided by WA Diabetes Research Foundation, Program 1037321; National Health and Medical Research Council of Australia, Project 1069173; European Commission FP7 grants MIMOmics, contract 305280, H2020 projects GlySign contract 722095, IMforFuture contract 721815; European Structural and Investment Funds IRI grant KK.01.2.1.01.0003; Croatian National Centre of Research Excellence in Personalized Healthcare grant KK.01.1.1.01.0010.
Project type Phenotype strain survey data set
MPD identifiersZaytseva2     MPD:652
Data changelog No updates/corrections.       Initial release date: 10/2019.
Formatted citation
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Mice: CC   95 strains   ♀♂   age 20-117wks   1 experimental group

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Procedure / Protocol
Treatment
Phenotype Measure / Variable (click to view)
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No. of Strains
Sex
Age
    Zaytseva2 glycosylation profile (none) IgG1 with bisected N-acetylglucosamine N-glycan structures (relative abundance)   [%]  mIgG1_B   110032     CC 94 both 20-117wks N=2
    Zaytseva2 glycosylation profile (none) IgG1 with galactosylated N-glycan structures (relative abundance)   [%]  mIgG1_G   110033     CC 94 both 20-117wks N=2
    Zaytseva2 glycosylation profile (none) IgG1 with agalactosylated N-glycan structures (relative abundance)   [%]  mIgG1_G0   110034     CC 94 both 20-117wks N=2
    Zaytseva2 glycosylation profile (none) IgG1 with monogalactosylated N-glycan structures (relative abundance)   [%]  mIgG1_G1   110035     CC 94 both 20-117wks N=2
    Zaytseva2 glycosylation profile (none) IgG1 with digalactosylated N-glycan structures (relative abundance)   [%]  mIgG1_G2   110036     CC 94 both 20-117wks N=2
    Zaytseva2 glycosylation profile (none) IgG1 with sialylated N-glycan structures (relative abundance)   [%]  mIgG1_S   110037     CC 94 both 20-117wks N=2
    Zaytseva2 glycosylation profile (none) IgG1 with monosialylated N-glycan structures (relative abundance)   [%]  mIgG1_S1   110038     CC 94 both 20-117wks N=2
    Zaytseva2 glycosylation profile (none) IgG1 with disialylated N-glycan structures (relative abundance)   [%]  mIgG1_S2   110039     CC 94 both 20-117wks N=2
    Zaytseva2 glycosylation profile (none) IgG1 with alpha1,3-linked galactose residue N-glycan structures (relative abundance)   [%]  mIgG1_aGal   110040     CC 94 both 20-117wks N=2
    Zaytseva2 glycosylation profile (none) IgG2 with bisected N-acetylglucosamine N-glycan structures (relative abundance)   [%]  mIgG2_B   110041     CC 94 both 20-117wks N=2
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