UNC-GMUGA1: SNPs for 69 Collaborative Cross strains plus 8 founder strains, 130,000+ locations (2020)

Morgan AP, Fu CP, Kao CY, Welsh CE, Didion JP, Yadgary L, Hyacinth L, Ferris MT, Bell TA, Miller DR, Giusti-Rodriguez P, Nonneman RJ, Cook KD, Whitmire JK, Gralinski LE, Keller M, Attie AD, Churchill GA, Petkov P, Sullivan PF, Brennan JR, McMillan L, Pardo-Manuel de Villena F. The Mouse Universal Genotyping Array: From Substrains to Subspecies. G3 (Bethesda). 2015 Dec 18;6(2):263-79. doi: 10.1534/g3.115.022087.   PubMed 26684931     FullText


       
The CC calls were captured from the UNC CC web site in late 2019. We merged the founder strain calls from Sanger4. Additional information on the UNC CC strains can be seen here: http://csbio.unc.edu/CCstatus/index.py?run=availableLines

Procedures conducted:
• genotyping  SNP profiling, 130,000+ genomic locations, 1-19,X,Y,MT.

UNC-GMUGA1 downloads
Do the following: Click Retrieve SNP Data above, submit a query, then save your results as CSV.
Institutional authorship UNC Systems Genetics
Investigators Fernando Pardo-Manuel de Villena       University of North Carolina,  Chapel Hill, NC
Participants Morgan AP, Fu CP, Kao CY, Welsh CE, Didion JP, Yadgary L, Hyacinth L, Ferris MT, Bell TA, Miller DR, Giusti-Rodriguez P, Nonneman RJ, Cook KD, Whitmire JK, Gralinski LE, Keller M, Attie AD, Churchill GA, Petkov P, Sullivan PF, Brennan JR, McMillan L
ContactFernando Pardo-Manuel de Villena     fernando@med.unc.edu
Funding Provided ByNIH OD010924, HG006582, AI100625, HD065024, DK101573, GM06755; Vaadia-BARD Postdoctoral Fellowship Award FI-12 478-13
Project type SNP/variation strain survey data set
MPD identifiersUNC-GMUGA1     MPD:1015
Data changelog No updates/corrections.       Initial release date: 02/2020.
Formatted citation
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• SNP profiling, 130,000+ genomic locations, 1-19,X,Y,MT.
• 77 strains tested
• Panel: CC w/par