Stanford2: SNP, indel, and structural variant data, 78+ M locations for 39 inbred strains of mice (2025)

Ren W, Fang Z, Cheng Z, Popic V, Peltz G   With: Saunders CT, Dolzhenko E

       
Ren W, Fang Z, Dolzhenko E, Saunders CT, Cheng Z, Popic V, Peltz G. A Murine Database of Structural Variants Enables the Genetic Architecture of a Spontaneous Murine Lymphoma to be Characterized. 2025/01/27 bioRxiv [Preprint]. 2025 Jan 14:2025.01.09.632219. doi: 10.1101/2025.01.09.632219.
To access these data, go to GenomeMUSter and select 'Stanford2' in the picklist for Data Set.

Procedures conducted:
• genotype assessment  70+M SNPs, 7.5+M indels, 573k structural variants

Stanford2 downloads
Do the following: Click Retrieve SNP Data above, submit a query, then save your results as CSV.
Investigators Wenlong Ren       Stanford University School of Medicine,  Stanford, CA
Zhuoqing Fang       Stanford University School of Medicine,  Stanford, CA
Zhuanfen Cheng       Stanford University School of Medicine,  Stanford, CA
Victoria Popic       Broad Institute of Harvard and MIT,  Cambridge, MA
Gary Peltz       Stanford University School of Medicine,  Stanford, CA
Participants Saunders CT, Dolzhenko E
ContactGary Peltz     gpeltz@stanford.edu
AcknowledgementsFunding provided by DC021133, OD035408, HG012467
Project type SNP/variation strain survey data set
MPD identifiersStanford2     MPD:1229
Data changelog No updates/corrections.       Initial release date: 12/2025.
Formatted citation
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• 70+M SNPs, 7.5+M indels, 573k structural variants
• 39 strains tested
• Panel: inbred