Chesler5: Intestinal microbiota in 10 inbred strains of mice (2012)

Campbell JH, Foster CM, Vishnivetskaya T, Campbell AG, Yang ZK, Wymore A, Palumbo AV, Chesler EJ, Podar M. Host genetic and environmental effects on mouse intestinal microbiota. ISME J. 2012 Nov;6(11):2033-44. doi: 10.1038/ismej.2012.54. Epub 2012 Jun 14.   PubMed 22695862     FullText

Bubier JA, Philip VM, Quince C, Campbell J, Zhou Y, Vishnivetskaya T, Duvvuru S, Hageman Blair R, Ndukum J, Donohue KD, Foster CM, Mellert DJ, Weinstock G, Culiat CT, O'Hara B, Palumbo AV, Podar M, Chesler EJ. A Microbe Associated with Sleep Revealed by a Novel Systems-Genetic Analysis of the Microbiome in Collaborative Cross Mice. Genetics. pii: genetics.303013.2019. doi: 10.1534/genetics.119.303013.   PubMed 31896565  

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Investigators Elissa J Chesler       The Jackson Laboratory,  Bar Harbor, ME
Jason A Bubier       The Jackson Laboratory,  Bar Harbor, ME
Mircea Podar       University of Tennessee,  Knoxville, TN
Participants Campbell JH, Foster CM, Vishnivetskaya T, Campbell AG, Yang ZK, Wymore A, Palumbo AV
ContactElissa J Chesler     Lab web site
AcknowledgementsFunding provided by NIH HG004857; US Department of Energy Office of Science DE-AC05-00OR22725; Oak Ridge National Laboratory (ORNL)
Project type Phenotype archive study
MPD identifiersChesler5     MPD:513
Data changelog No updates/corrections.       Initial release date: 05/2018.
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• Download the data for 10 inbred strains

See also Bubier2 which is a related intestinal microbiome QTL study involving Collaborative Cross lines. (The inbred strains data are available there in an alternative format in the xlsx file, under the "Progenitors" tab)

The following additional information is available:
  • Protocol
  • Animal documentation

The 10 inbred strains are:

Includes all 8 Collaborative Cross founder strains, plus DBA and C3H.

(Strain nomenclature of C3H/HeJR and DBA/2JR was submitted; we present these strains as C3H/HeJ and DBA/2J)