Project measure / variable:   Seburn1   tot_daily

ID, description, units MPD:9223   tot_daily   total activity, beam breaks per min, 3 day test   [n/min]  daily  
Data set, strains Seburn1   inbred   16 strains     sex: both     age: 7-9wks
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  STRAIN COMPARISON PLOT
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Seburn1 - total activity, beam breaks per min, 3 day test daily



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested15 strains16 strains
Mean of the strain means35.8   n/min 29.3   n/min
Median of the strain means33.4   n/min 27.3   n/min
SD of the strain means± 10.6 ± 8.42
Coefficient of variation (CV)0.296 0.288
Min–max range of strain means22.7   –   55.3   n/min 17.0   –   45.7   n/min
Mean sample size per strain8.0   mice 8.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 2199.176 2199.176 43.301 < 0.0001
strain 14 19568.8448 1397.7746 27.5217 < 0.0001
sex:strain 14 1123.6108 80.2579 1.5802 0.0866
Residuals 210 10665.5112 50.7881


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 23.1 3.38   8 1.19 0.146 18.9, 29.6 -1.2
129S1/SvImJ m 21.4 2.59   8 0.915 0.121 16.9, 24.8 -0.94
A/J f 33.4 6.89   8 2.44 0.206 22.4, 45.4 -0.23
A/J m 28.9 5.69   8 2.01 0.197 20.1, 35.4 -0.05
AKR/J f 40.4 5.45   8 1.93 0.135 34.8, 47.9 0.43
AKR/J m 28.3 3.79   8 1.34 0.134 23.7, 33.7 -0.12
BALB/cJ f 40.3 7.25   8 2.56 0.18 28.1, 53.9 0.42
BALB/cJ m 33.8 3.78   8 1.34 0.112 28.4, 39.5 0.54
BTBR T+ Itpr3tf/J f 36.4 7.59   8 2.68 0.208 25.5, 46.6 0.06
BTBR T+ Itpr3tf/J m 33.1 4.81   8 1.7 0.145 25.9, 39.4 0.45
C3H/HeJ f 27.8 3.61   8 1.28 0.13 22.8, 32.7 -0.75
C3H/HeJ m 21.9 2.76   8 0.976 0.126 17.4, 25.7 -0.88
C57BL/6J f 51.7 7.44   8 2.63 0.144 38.2, 61.5 1.5
C57BL/6J m 37.7 3.81   8 1.35 0.101 32.9, 45.5 1.0
CAST/EiJ f 55.3 14.1   8 4.97 0.254 40.1, 83.9 1.84
CAST/EiJ m 40.8 11.4   8 4.04 0.28 22.8, 56.5 1.37
CBA/J f 31.4 4.26   8 1.51 0.136 25.0, 37.4 -0.41
CBA/J m 24.6 5.29   8 1.87 0.214 19.0, 34.6 -0.56
FVB/NJ f 38.7 7.3   8 2.58 0.189 25.1, 46.0 0.27
FVB/NJ m 40.4 21.4   8 7.55 0.529 26.2, 91.8 1.32
LP/J f 23.2 7.75   8 2.74 0.334 11.1, 34.1 -1.19
LP/J m 20.9 4.76   8 1.68 0.228 15.0, 28.4 -0.99
NOD/ShiLtJ f 51.7 6.47   8 2.29 0.125 42.5, 60.0 1.5
NOD/ShiLtJ m 45.7 4.21   8 1.49 0.0923 41.2, 52.8 1.95
NZB/BlNJ f 22.7 3.58   8 1.26 0.157 17.0, 28.1 -1.23
NZB/BlNJ m 17.0 4.01   8 1.42 0.235 13.3, 24.5 -1.46
PL/J f 30.1 5.48   8 1.94 0.182 20.6, 36.0 -0.54
PL/J m 26.3 2.59   8 0.917 0.0987 22.4, 30.6 -0.35
SJL/J m 22.4 2.56   8 0.905 0.114 18.8, 26.2 -0.82
SWR/J f 30.7 5.03   8 1.78 0.164 24.1, 38.6 -0.48
SWR/J m 25.3 5.08   8 1.8 0.201 19.5, 32.6 -0.47


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 23.1 2.5196 28.067 18.133
129S1/SvImJ m 21.35 2.5196 26.317 16.383
A/J f 33.4125 2.5196 38.3795 28.4455
A/J m 28.9125 2.5196 33.8795 23.9455
AKR/J f 40.3625 2.5196 45.3295 35.3955
AKR/J m 28.325 2.5196 33.292 23.358
BALB/cJ f 40.3375 2.5196 45.3045 35.3705
BALB/cJ m 33.7875 2.5196 38.7545 28.8205
BTBR T+ Itpr3tf/J f 36.4125 2.5196 41.3795 31.4455
BTBR T+ Itpr3tf/J m 33.1375 2.5196 38.1045 28.1705
C3H/HeJ f 27.825 2.5196 32.792 22.858
C3H/HeJ m 21.9125 2.5196 26.8795 16.9455
C57BL/6J f 51.7 2.5196 56.667 46.733
C57BL/6J m 37.675 2.5196 42.642 32.708
CAST/EiJ f 55.3375 2.5196 60.3045 50.3705
CAST/EiJ m 40.7875 2.5196 45.7545 35.8205
CBA/J f 31.35 2.5196 36.317 26.383
CBA/J m 24.65 2.5196 29.617 19.683
FVB/NJ f 38.675 2.5196 43.642 33.708
FVB/NJ m 40.4 2.5196 45.367 35.433
LP/J f 23.225 2.5196 28.192 18.258
LP/J m 20.9125 2.5196 25.8795 15.9455
NOD/ShiLtJ f 51.6625 2.5196 56.6295 46.6955
NOD/ShiLtJ m 45.6625 2.5196 50.6295 40.6955
NZB/BlNJ f 22.725 2.5196 27.692 17.758
NZB/BlNJ m 17.025 2.5196 21.992 12.058
PL/J f 30.1 2.5196 35.067 25.133
PL/J m 26.275 2.5196 31.242 21.308
SWR/J f 30.6625 2.5196 35.6295 25.6955
SWR/J m 25.2625 2.5196 30.2295 20.2955


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 22.225 1.7816 25.7372 18.7128
A/J both 31.1625 1.7816 34.6747 27.6503
AKR/J both 34.3438 1.7816 37.856 30.8315
BALB/cJ both 37.0625 1.7816 40.5747 33.5503
BTBR T+ Itpr3tf/J both 34.775 1.7816 38.2872 31.2628
C3H/HeJ both 24.8688 1.7816 28.381 21.3565
C57BL/6J both 44.6875 1.7816 48.1997 41.1753
CAST/EiJ both 48.0625 1.7816 51.5747 44.5503
CBA/J both 28.0 1.7816 31.5122 24.4878
FVB/NJ both 39.5375 1.7816 43.0497 36.0253
LP/J both 22.0688 1.7816 25.581 18.5565
NOD/ShiLtJ both 48.6625 1.7816 52.1747 45.1503
NZB/BlNJ both 19.875 1.7816 23.3872 16.3628
PL/J both 28.1875 1.7816 31.6997 24.6753
SWR/J both 27.9625 1.7816 31.4747 24.4503




  GWAS USING LINEAR MIXED MODELS