Phenotype measure:   Seburn1   RER_daily

ID, description, units MPD:9214   RER_daily   respiratory exchange ratio, 3 day test   [ratio]  daily
Data set, strains Seburn1   inbred   14 strains     sex: both     age: 7-9wks
Procedure monitoring system
Ontology mappings

  STRAIN COMPARISON PLOT
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Seburn1 - respiratory exchange ratio, 3 day test daily



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested11 strains14 strains
Mean of the strain means0.754   ratio 0.751   ratio
Median of the strain means0.788   ratio 0.762   ratio
SD of the strain means± 0.0749 ± 0.0857
Coefficient of variation (CV)0.0992 0.114
Min–max range of strain means0.659   –   0.853   ratio 0.645   –   0.847   ratio
Mean sample size per strain8.0   mice 8.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 0.0036 0.0036 9.2713 0.0028
strain 8 0.8853 0.1107 284.996 < 0.0001
sex:strain 8 0.011 0.0014 3.5411 0.001
Residuals 126 0.0489 0.0004


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 0.668 0.0128   8 0.00453 0.0192 0.65, 0.68 -1.15
129S1/SvImJ m 0.664 0.0106   8 0.00375 0.016 0.65, 0.68 -1.02
A/J f 0.662 0.0266   8 0.0094 0.0401 0.62, 0.71 -1.23
A/J m 0.645 0.00756   8 0.00267 0.0117 0.63, 0.65 -1.24
AKR/J m 0.649 0.0264   8 0.00934 0.0407 0.61, 0.7 -1.2
BALB/cJ f 0.792 0.0249   8 0.00881 0.0315 0.75, 0.83 0.5
BALB/cJ m 0.821 0.0314   8 0.0111 0.0382 0.75, 0.85 0.81
BTBR T+ Itpr3tf/J f 0.659 0.0113   8 0.00398 0.0171 0.64, 0.67 -1.28
BTBR T+ Itpr3tf/J m 0.661 0.0236   8 0.00833 0.0356 0.64, 0.71 -1.06
C3H/HeJ m 0.686 0.0106   8 0.00375 0.0155 0.67, 0.7 -0.76
C57BL/6J f 0.75 0.0385   8 0.0136 0.0514 0.7, 0.81 -0.06
CAST/EiJ f 0.788 0.0238   8 0.0084 0.0302 0.76, 0.82 0.45
CAST/EiJ m 0.807 0.0231   8 0.00818 0.0287 0.78, 0.84 0.65
CBA/J f 0.674 0.0277   8 0.00981 0.0412 0.63, 0.71 -1.07
FVB/NJ m 0.676 0.0288   8 0.0102 0.0425 0.65, 0.74 -0.88
LP/J f 0.807 0.0158   8 0.00559 0.0196 0.78, 0.82 0.7
LP/J m 0.843 0.0175   8 0.0062 0.0208 0.82, 0.87 1.07
NOD/ShiLtJ m 0.83 0.0207   8 0.00732 0.0249 0.81, 0.86 0.92
NZB/BlNJ f 0.826 0.0226   8 0.008 0.0274 0.81, 0.88 0.96
NZB/BlNJ m 0.832 0.00707   8 0.0025 0.00849 0.82, 0.84 0.94
PL/J f 0.82 0.0273   8 0.00964 0.0332 0.78, 0.86 0.88
PL/J m 0.847 0.00707   8 0.0025 0.00834 0.84, 0.86 1.11
SJL/J m 0.716 0.00744   8 0.00263 0.0104 0.7, 0.72 -0.41
SWR/J f 0.853 0.0205   8 0.00726 0.0241 0.82, 0.88 1.32
SWR/J m 0.844 0.0151   8 0.00532 0.0178 0.82, 0.87 1.08


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 0.6675 0.007 0.6813 0.6537
129S1/SvImJ m 0.6638 0.007 0.6775 0.65
A/J f 0.6625 0.007 0.6763 0.6487
A/J m 0.645 0.007 0.6588 0.6312
BALB/cJ f 0.7925 0.007 0.8063 0.7787
BALB/cJ m 0.8213 0.007 0.835 0.8075
BTBR T+ Itpr3tf/J f 0.6588 0.007 0.6725 0.645
BTBR T+ Itpr3tf/J m 0.6613 0.007 0.675 0.6475
CAST/EiJ f 0.7875 0.007 0.8013 0.7737
CAST/EiJ m 0.8075 0.007 0.8213 0.7937
LP/J f 0.8075 0.007 0.8213 0.7937
LP/J m 0.8425 0.007 0.8563 0.8287
NZB/BlNJ f 0.8263 0.007 0.84 0.8125
NZB/BlNJ m 0.8325 0.007 0.8463 0.8187
PL/J f 0.82 0.007 0.8338 0.8062
PL/J m 0.8475 0.007 0.8613 0.8337
SWR/J f 0.8525 0.007 0.8663 0.8387
SWR/J m 0.8438 0.007 0.8575 0.83


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 0.6656 0.0049 0.6754 0.6559
A/J both 0.6538 0.0049 0.6635 0.644
BALB/cJ both 0.8069 0.0049 0.8166 0.7971
BTBR T+ Itpr3tf/J both 0.66 0.0049 0.6697 0.6503
CAST/EiJ both 0.7975 0.0049 0.8072 0.7878
LP/J both 0.825 0.0049 0.8347 0.8153
NZB/BlNJ both 0.8294 0.0049 0.8391 0.8196
PL/J both 0.8338 0.0049 0.8435 0.824
SWR/J both 0.8481 0.0049 0.8579 0.8384




  GENOME-WIDE ASSOCIATION (GWAS) STATIC PLOT
Plot generated with EMMA / pyLMM using 132K SNP array. Click on plot to view at larger size.