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Project measure / variable:   CSNA03   activity_wo_gray_in

ID, description, units MPD:90292   activity_wo_gray_in   percentage of activity counts in novel zone, excluding center gray zone (novelty preference), founders   [%]  
Data set, strains CSNA03   inbred w/CC8   10 strains     sex: both     age: 12wks
Procedure conditioned place preference test
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  STRAIN COMPARISON PLOT
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CSNA03 - percentage of activity counts in novel zone, excluding center gray zone (novelty preference), founders



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested10 strains10 strains
Mean of the strain means76.26   % 76.5   %
Median of the strain means77.31   % 76.16   %
SD of the strain means± 6.5942 ± 6.4525
Coefficient of variation (CV)0.0865 0.0843
Min–max range of strain means66.33   –   87.0   % 65.93   –   84.13   %
Mean sample size per strain40.4   mice 39.3   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 80.5166 80.5166 0.397 0.5288
strain 9 27463.4012 3051.489 15.0458 < 0.0001
sex:strain 9 1071.097 119.0108 0.5868 0.8086
Residuals 777 157585.6173 202.8129


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 87.0 10.499   42 1.62 0.1207 54.55, 100.0 1.63
129S1/SvImJ m 83.95 21.696   45 3.2343 0.2585 0.91075, 100.0 1.16
A/J f 75.85 15.127   60 1.9528 0.1994 42.596, 100.0 -0.06
A/J m 75.7 20.01   61 2.5621 0.2643 2.8829, 100.0 -0.12
C57BL/6J f 66.33 12.841   58 1.6861 0.1936 34.996, 92.21 -1.51
C57BL/6J m 67.34 11.981   55 1.6156 0.1779 41.444, 100.0 -1.42
C57BL/6NJ f 67.59 18.324   9 6.1081 0.2711 39.289, 94.51 -1.31
C57BL/6NJ m 65.93 9.9074   10 3.133 0.1503 49.474, 77.89 -1.64
CAST/EiJ f 71.44 16.475   31 2.959 0.2306 0.72993, 86.71 -0.73
CAST/EiJ m 73.45 15.176   28 2.868 0.2066 11.281, 93.93 -0.47
DBA/2J f 79.31 15.012   24 3.0643 0.1893 18.634, 99.78 0.46
DBA/2J m 76.61 14.42   23 3.0068 0.1882 45.609, 98.43 0.02
NOD/ShiLtJ f 78.8 15.553   42 2.3999 0.1974 4.0162, 95.41 0.39
NOD/ShiLtJ m 79.02 13.82   39 2.213 0.1749 13.175, 96.81 0.39
NZO/HlLtJ f 74.05 17.328   44 2.6123 0.234 21.527, 100.0 -0.34
NZO/HlLtJ m 75.42 11.438   43 1.7442 0.1516 47.837, 100.0 -0.17
PWK/PhJ f 83.46 8.9298   43 1.3618 0.107 39.601, 94.17 1.09
PWK/PhJ m 83.42 7.6595   42 1.1819 0.0918 60.84, 99.1 1.07
WSB/EiJ f 78.78 9.9415   51 1.3921 0.1262 50.7, 100.0 0.38
WSB/EiJ m 84.13 8.983   47 1.3103 0.1068 65.4, 100.0 1.18


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 87.0033333333 2.1974709073 91.3170165879 82.6896500788
129S1/SvImJ m 83.9474611111 2.1229585871 88.1148750581 79.7800471641
A/J f 75.8519833333 1.8385360676 79.4610696795 72.2428969871
A/J m 75.6996377049 1.8234038261 79.2790191316 72.1202562782
C57BL/6J f 66.3265517241 1.8699663113 69.9973363233 62.655767125
C57BL/6J m 67.342 1.9202882942 71.1115677477 63.5724322523
C57BL/6NJ f 67.591 4.7470797141 76.9096208759 58.2723791241
C57BL/6NJ m 65.9264 4.5034752392 74.7668199859 57.0859800141
CAST/EiJ f 71.4414816129 2.5578020574 76.4625027636 66.4204604622
CAST/EiJ m 73.4541071429 2.6913412237 78.7372685857 68.1709457
DBA/2J f 79.3139166667 2.9069807669 85.0203832298 73.6074501035
DBA/2J m 76.6106956522 2.9695036352 82.4398959675 70.7814953369
NOD/ShiLtJ f 78.8013380952 2.1974709073 83.1150213498 74.4876548407
NOD/ShiLtJ m 79.0198717949 2.2804233317 83.4963924655 74.5433511243
NZO/HlLtJ f 74.0486136364 2.1469475811 78.2631185012 69.8341087715
NZO/HlLtJ m 75.422255814 2.1717686089 79.6854848971 71.1590267308
PWK/PhJ f 83.457 2.1717686089 87.7202290832 79.1937709168
PWK/PhJ m 83.4207142857 2.1974709073 87.7343975403 79.1070310312
WSB/EiJ f 78.7754901961 1.9941723543 82.690093963 74.8608864291
WSB/EiJ m 84.1289361702 2.0772982264 88.2067178347 80.0511545057


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 85.4753972222 1.5277296514 88.4743638037 82.4764306408
A/J both 75.7758105191 1.2947023195 78.3173393726 73.2342816657
C57BL/6J both 66.8342758621 1.3401754678 69.465069496 64.2034822281
C57BL/6NJ both 66.7587 3.2716989104 73.1811162228 60.3362837772
CAST/EiJ both 72.4477943779 1.8564528641 76.092051786 68.8035369698
DBA/2J both 77.9623061594 2.0777685758 82.0410111301 73.8836011887
NOD/ShiLtJ both 78.9106049451 1.5834463174 82.0189445555 75.8022653346
NZO/HlLtJ both 74.7354347252 1.5269219698 77.73281581 71.7380536403
PWK/PhJ both 83.4388571429 1.5447861728 86.4713060475 80.4064082383
WSB/EiJ both 81.4522131831 1.4397822144 84.2785370303 78.625889336




  GWAS USING LINEAR MIXED MODELS