Project measure / variable:   CSNA03   pct_vert_counts_light_LD_do

ID, description, units MPD:90261   pct_vert_counts_light_LD_do   percentage of vertical counts in light, 20 min test (LD box), DO   [%]  
Data set, strains CSNA03   DO population w/par   9 strains     sex: both     age: 4-25wks
Procedure light-dark box
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Plot Options Bins number: (min: 10, max: 40)


Distribution of Individual Animals with Boxplots.





  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested9 strains9 strains
Mean of the strain means45.256   % 42.263   %
Median of the strain means48.92   % 44.414   %
SD of the strain means± 10.91 ± 11.696
Coefficient of variation (CV)0.2411 0.2767
Min–max range of strain means22.875   –   57.54   % 21.718   –   54.96   %
Mean sample size per strain209.1   mice 198.3   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 2029.8446 2029.8446 9.1011 0.0026
strain 8 118137.6098 14767.2012 66.2111 < 0.0001
sex:strain 8 7978.1348 997.2669 4.4714 < 0.0001
Residuals 3649 813843.8096 223.032


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page:
Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 57.54 39.031   38 6.3317 0.6784 1.13
129S1/SvImJ m 41.874 40.609   46 5.9874 0.9698 -0.03
A/J f 33.254 36.726   60 4.7413 1.1044 -1.1
A/J m 21.718 29.849   61 3.8217 1.3744 -1.76
C57BL/6J f 50.58 15.069   60 1.9455 0.2979 25.0, 100.0 0.49
C57BL/6J m 50.48 11.346   59 1.4771 0.2248 22.701, 81.6 0.7
CAST/EiJ f 48.92 9.3052   33 1.6198 0.1902 31.25, 74.75 0.34
CAST/EiJ m 50.31 10.487   30 1.9146 0.2085 36.12, 83.52 0.69
J:DO f 49.545 12.816   1495 0.33146 0.2587 0.39
J:DO m 48.662 12.854   1402 0.34329 0.2641 0.55
NOD/ShiLtJ f 55.0 12.921   47 1.8847 0.2349 2.8571, 90.0 0.89
NOD/ShiLtJ m 54.96 8.8573   44 1.3353 0.1611 39.474, 81.38 1.09
NZO/HlLtJ f 22.875 12.334   47 1.7991 0.5392 3.4884, 57.45 -2.05
NZO/HlLtJ m 24.084 10.358   46 1.5272 0.4301 1.2195, 45.299 -1.55
PWK/PhJ f 45.431 9.8924   47 1.443 0.2177 29.297, 82.37 0.02
PWK/PhJ m 43.869 7.4231   47 1.0828 0.1692 27.027, 58.68 0.14
WSB/EiJ f 44.162 12.31   55 1.6599 0.2788 22.581, 83.5 -0.1
WSB/EiJ m 44.414 13.132   50 1.8571 0.2957 17.213, 95.58 0.18


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 57.5365263158 2.4226562814 62.2864208941 52.7866317375
129S1/SvImJ m 41.8740782609 2.2019359634 46.1912254248 37.556931097
A/J f 33.2535458333 1.9280041986 37.0336184587 29.4734732079
A/J m 21.7175136066 1.9121355814 25.466473994 17.9685532191
C57BL/6J f 50.5814666667 1.9280041986 54.3615392921 46.8013940413
C57BL/6J m 50.477 1.9442745647 54.288972538 46.665027462
CAST/EiJ f 48.9203636364 2.5997203311 54.0174125247 43.8233147481
CAST/EiJ m 50.3069333333 2.726609686 55.6527633069 44.9611033597
J:DO f 49.5453343813 0.3862451189 50.3026120894 48.7880566731
J:DO m 48.662438067 0.3988499975 49.4444290806 47.8804470535
NOD/ShiLtJ f 55.0038744681 2.178385169 59.2748476075 50.7329013287
NOD/ShiLtJ m 54.9641363636 2.2514238494 59.3783101852 50.549962542
NZO/HlLtJ f 22.8749234043 2.178385169 27.1458965436 18.6039502649
NZO/HlLtJ m 24.0838826087 2.2019359634 28.4010297726 19.7667354448
PWK/PhJ f 45.4310851064 2.178385169 49.7020582458 41.160111967
PWK/PhJ m 43.8694680851 2.178385169 48.1404412245 39.5984949457
WSB/EiJ f 44.1623818182 2.0137347094 48.11053891 40.2142247264
WSB/EiJ m 44.41388 2.1120227811 48.5547420919 40.2730179081


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 49.7053022883 1.6369014513 52.914634701 46.4959698757
A/J both 27.4855297199 1.3577060315 30.1474675968 24.8235918431
C57BL/6J both 50.5292333333 1.3690693712 53.2134503367 47.84501633
CAST/EiJ both 49.6136484848 1.8836763376 53.3068112715 45.9204856982
J:DO both 49.1038862242 0.2776088131 49.6481700363 48.5596024121
NOD/ShiLtJ both 54.9840054159 1.5663868691 58.0550859295 51.9129249022
NZO/HlLtJ both 23.4794030065 1.5486997717 26.5158059438 20.4430000691
PWK/PhJ both 44.6502765957 1.540350925 47.6703106649 41.6302425266
WSB/EiJ both 44.2881309091 1.459089417 47.1488425026 41.4274193155




GWAS analysis not available: Strain panel must be either Inbred, HMDP, BXD, BXH, CXB, or AXB/BXA