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Project measure / variable:   CSNA03   jump_counts_dark_LD_in

ID, description, units MPD:90244   jump_counts_dark_LD_in   jump counts in dark, 20 min test (LD box), founders   [n]  
Data set, strains CSNA03   inbred w/CC8   10 strains     sex: both     age: 4-14wks
Procedure light-dark box
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  STRAIN COMPARISON PLOT
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CSNA03 - jump counts in dark, 20 min test (LD box), founders



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested10 strains10 strains
Mean of the strain means841.0   n 669.0   n
Median of the strain means1007.0   n 765.0   n
SD of the strain means± 424.4 ± 363.0
Coefficient of variation (CV)0.5046 0.5426
Min–max range of strain means123.6   –   1288.0   n 99.88   –   1072.0   n
Mean sample size per strain43.5   mice 42.5   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 5610113.7452 5610113.7452 70.0581 < 0.0001
strain 9 133699663.4364 14855518.1596 185.5131 < 0.0001
sex:strain 9 1216608.461 135178.7179 1.6881 0.0877
Residuals 840 67265526.7108 80078.008


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 123.6 245.4   49 35.062 1.9859 -1.69
129S1/SvImJ m 99.88 130.4   49 18.635 1.306 -1.57
A/J f 314.5 388.0   60 50.09 1.2336 -1.24
A/J m 219.7 269.6   61 34.522 1.2273 -1.24
C57BL/6J f 1038.0 324.8   60 41.927 0.3129 0.46
C57BL/6J m 872.2 250.8   59 32.65 0.2875 99.0, 1478.0 0.56
C57BL/6NJ f 983.4 307.8   13 85.36 0.313 372.0, 1565.0 0.34
C57BL/6NJ m 727.4 266.9   13 74.03 0.3669 151.0, 1183.0 0.16
CAST/EiJ f 1288.0 304.2   33 52.95 0.2361 193.0, 1710.0 1.05
CAST/EiJ m 1050.0 319.2   30 58.28 0.3039 30.0, 1423.0 1.05
DBA/2J f 993.5 180.2   24 36.792 0.1814 619.0, 1265.0 0.36
DBA/2J m 675.6 199.7   24 40.771 0.2956 282.0, 1025.0 0.02
NOD/ShiLtJ f 1105.0 285.0   47 41.575 0.2578 404.0, 2346.0 0.62
NOD/ShiLtJ m 956.4 241.7   44 36.433 0.2527 495.0, 1313.0 0.79
NZO/HlLtJ f 305.3 180.1   47 26.274 0.5901 -1.26
NZO/HlLtJ m 213.8 93.91   46 13.846 0.4393 76.0, 544.0 -1.25
PWK/PhJ f 1020.0 377.7   47 55.09 0.3702 0.42
PWK/PhJ m 802.7 290.0   48 41.852 0.3612 3.0, 1529.0 0.37
WSB/EiJ f 1239.0 343.8   55 46.352 0.2775 128.0, 2100.0 0.94
WSB/EiJ m 1072.0 341.7   51 47.849 0.3187 1.11


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 123.5918367347 40.4257969742 202.9392725375 44.2444009319
129S1/SvImJ m 99.8775510204 40.4257969742 179.2249868233 20.5301152176
A/J f 314.5333333333 36.5326356356 386.2393027334 242.8273639333
A/J m 219.6885245902 36.2319503937 290.8043113663 148.5727378141
C57BL/6J f 1037.9833333333 36.5326356356 1109.6893027334 966.2773639333
C57BL/6J m 872.1525423729 36.8409333853 944.4636361669 799.8414485788
C57BL/6NJ f 983.3846153846 78.4846912996 1137.4337491189 829.3354816503
C57BL/6NJ m 727.3846153846 78.4846912996 881.4337491189 573.3354816503
CAST/EiJ f 1288.0909090909 49.2605958419 1384.7792185055 1191.4025996763
CAST/EiJ m 1050.5 51.6649487851 1151.9075544286 949.0924455714
DBA/2J f 993.5416666667 57.7631687688 1106.9187592339 880.1645740995
DBA/2J m 675.625 57.7631687688 789.0020925672 562.2479074328
NOD/ShiLtJ f 1105.3829787234 41.2769597236 1186.4010700647 1024.3648873821
NOD/ShiLtJ m 956.3636363636 42.6609274047 1040.0981685656 872.6291041616
NZO/HlLtJ f 305.2553191489 41.2769597236 386.2734104903 224.2372278076
NZO/HlLtJ m 213.7608695652 41.723210095 295.6548576197 131.8668815107
PWK/PhJ f 1020.2765957447 41.2769597236 1101.294687086 939.2585044034
PWK/PhJ m 802.7083333333 40.8447283392 882.8780443188 722.5386223478
WSB/EiJ f 1238.9636363636 38.157093464 1313.8580787908 1164.0691939365
WSB/EiJ m 1072.2352941176 39.6252068688 1150.011337969 994.4592502663


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 111.7346938776 28.5853551754 167.8418038035 55.6275839516
A/J both 267.1109289618 25.7263857538 317.6064762317 216.6153816918
C57BL/6J both 955.0679378531 25.9417031013 1005.9861083163 904.1497673899
C57BL/6NJ both 855.3846153846 55.4970574373 964.3138024841 746.4554282852
CAST/EiJ both 1169.2954545454 35.6926926543 1239.3527904794 1099.2381186115
DBA/2J both 834.5833333333 40.8447283392 914.7530443188 754.4136223478
NOD/ShiLtJ both 1030.8733075435 29.6805581612 1089.1300732615 972.6165418255
NZO/HlLtJ both 259.5080943571 29.3454155902 317.1070448772 201.909143837
PWK/PhJ both 911.492464539 29.0348034139 968.4817479265 854.5031811515
WSB/EiJ both 1155.5994652406 27.5050940783 1209.5862471961 1101.6126832851




  GWAS USING LINEAR MIXED MODELS