Project measure / variable:   CSNA03   stereotypic_counts_dark_LD_do

ID, description, units MPD:90234   stereotypic_counts_dark_LD_do   stereotypic counts in dark, 20 min test (LD box), DO   [n]  
Data set, strains CSNA03   DO population w/par   9 strains     sex: both     age: 4-25wks
Procedure light-dark box
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Plot Options Bins number: (min: 10, max: 40)


Distribution of Individual Animals with Boxplots.





  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested9 strains9 strains
Mean of the strain means1544.0   n 1783.0   n
Median of the strain means1424.0   n 1681.0   n
SD of the strain means± 396.7 ± 471.9
Coefficient of variation (CV)0.257 0.2646
Min–max range of strain means1168.0   –   2401.0   n 1267.0   –   2545.0   n
Mean sample size per strain210.4   mice 199.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 90104708.8028 90104708.8028 255.1108 < 0.0001
strain 8 177573445.26 22196680.6575 62.8448 < 0.0001
sex:strain 8 6217877.1721 777234.6465 2.2006 0.0246
Residuals 3667 1295178232.6523 353198.3181


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page:
Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 1327.0 1072.0   49 153.2 0.8079 -0.55
129S1/SvImJ m 1579.0 978.7   49 139.8 0.6198 -0.43
A/J f 1801.0 1101.0   60 142.2 0.6115 0.65
A/J m 2354.0 1067.0   61 136.7 0.4534 1.21
C57BL/6J f 1560.0 420.9   60 54.34 0.2698 0.04
C57BL/6J m 1900.0 347.6   59 45.253 0.1829 1353.0, 2802.0 0.25
CAST/EiJ f 1219.0 263.3   33 45.842 0.216 718.0, 1979.0 -0.82
CAST/EiJ m 1285.0 292.7   30 53.43 0.2277 427.0, 1879.0 -1.06
J:DO f 1768.0 598.8   1496 15.481 0.3387 165.0, 4354.0 0.56
J:DO m 2098.0 555.7   1403 14.837 0.2649 0.67
NOD/ShiLtJ f 1168.0 545.1   47 79.52 0.4668 504.0, 3939.0 -0.95
NOD/ShiLtJ m 1341.0 312.7   44 47.149 0.2332 703.0, 1914.0 -0.94
NZO/HlLtJ f 2401.0 530.8   47 77.42 0.2211 1338.0, 4053.0 2.16
NZO/HlLtJ m 2545.0 490.2   46 72.27 0.1926 1766.0, 3944.0 1.61
PWK/PhJ f 1424.0 361.5   47 52.73 0.2539 756.0, 2057.0 -0.3
PWK/PhJ m 1681.0 375.9   48 54.25 0.2236 1014.0, 2827.0 -0.22
WSB/EiJ f 1228.0 249.8   55 33.678 0.2033 724.0, 2208.0 -0.8
WSB/EiJ m 1267.0 323.9   51 45.361 0.2556 145.0, 1930.0 -1.09


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 1327.4693877553 84.9007004789 1493.9266451034 1161.0121304072
129S1/SvImJ m 1579.1224489798 84.900700479 1745.5797063279 1412.6651916317
A/J f 1800.6666666666 76.7244331085 1951.0934432984 1650.2398900349
A/J m 2354.2459016393 76.0929455541 2503.4345767506 2205.0572265281
C57BL/6J f 1560.1833333334 76.7244331085 1710.6101099652 1409.7565567017
C57BL/6J m 1900.3898305085 77.371908158 2052.0860539216 1748.6936070955
CAST/EiJ f 1219.4242424243 103.4552044986 1422.2596666561 1016.5888181925
CAST/EiJ m 1285.0333333334 108.5047338674 1497.76892099 1072.2977456767
J:DO f 1767.6911764706 15.3653874814 1797.8167260104 1737.5656269308
J:DO m 2098.3071988596 15.8664759561 2129.4151880344 2067.1992096848
NOD/ShiLtJ f 1167.8085106383 86.6882796747 1337.7705156332 997.8465056434
NOD/ShiLtJ m 1341.3636363636 89.5948352495 1517.0242665358 1165.7030061915
NZO/HlLtJ f 2400.6595744682 86.6882796747 2570.6215794631 2230.6975694733
NZO/HlLtJ m 2544.9130434783 87.6254775028 2716.7125289553 2373.1135580012
PWK/PhJ f 1423.8510638298 86.6882796747 1593.8130688247 1253.8890588349
PWK/PhJ m 1681.3958333334 85.7805239828 1849.5780824257 1513.213584241
WSB/EiJ f 1228.3636363636 80.1360568203 1385.4792803778 1071.2479923495
WSB/EiJ m 1267.1568627451 83.2193320005 1430.3176103596 1103.9961151306


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 1453.2959183675 60.0338610361 1570.9989738161 1335.592862919
A/J both 2077.456284153 54.0295636641 2183.3872474136 1971.5253208924
C57BL/6J both 1730.286581921 54.4817648572 1837.1041358688 1623.4690279732
CAST/EiJ both 1252.2287878788 74.9604172372 1399.1970153796 1105.260560378
J:DO both 1932.9991876651 11.0435523238 1954.6512991416 1911.3470761885
NOD/ShiLtJ both 1254.586073501 62.3339641294 1376.7987366484 1132.3734103535
NZO/HlLtJ both 2472.7863089732 61.6301106208 2593.6189891058 2351.9536288406
PWK/PhJ both 1552.6234485816 60.9777749014 1672.1771520496 1433.0697451136
WSB/EiJ both 1247.7602495544 57.7651383217 1361.0152220237 1134.505277085




GWAS analysis not available: Strain panel must be either Inbred, HMDP, BXD, BXH, CXB, or AXB/BXA