Project measure / variable:   CSNA03   stereotypic_counts_light_LD_in

ID, description, units MPD:90229   stereotypic_counts_light_LD_in   stereotypic counts in light, 20 min test (LD box), founders   [n]  
Data set, strains CSNA03   inbred w/CC8   10 strains     sex: both     age: 4-14wks
Procedure light-dark box
Ontology mappings

  •   Or, add this measure to your collection.
       
  •     no folder
  •     put it in new folder  

  STRAIN COMPARISON PLOT
Dimensions Width:   px    Height:   px
Download Plot   
Visualization Options

CSNA03 - stereotypic counts in light, 20 min test (LD box), founders



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested10 strains10 strains
Mean of the strain means970.9   n 1078.0   n
Median of the strain means1103.0   n 1178.0   n
SD of the strain means± 305.5 ± 374.5
Coefficient of variation (CV)0.3147 0.3474
Min–max range of strain means492.2   –   1282.0   n 551.7   –   1553.0   n
Mean sample size per strain43.5   mice 42.5   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 1145821.1697 1145821.1697 4.8896 0.0273
strain 9 88273752.9217 9808194.7691 41.8546 < 0.0001
sex:strain 9 3578338.2305 397593.1367 1.6967 0.0857
Residuals 840 196845347.049 234339.6989


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page:
Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 492.2 585.8   49 83.68 1.19 6.0, 2927.0 -1.57
129S1/SvImJ m 591.0 596.7   49 85.25 1.0097 -1.3
A/J f 691.5 636.8   60 82.21 0.9209 -0.91
A/J m 551.7 660.8   61 84.6 1.1976 5.0, 2226.0 -1.41
C57BL/6J f 1282.0 613.2   60 79.16 0.4782 268.0, 3839.0 1.02
C57BL/6J m 1400.0 433.3   59 56.41 0.3095 781.0, 3525.0 0.86
C57BL/6NJ f 1226.0 500.0   13 138.7 0.4077 438.0, 2563.0 0.83
C57BL/6NJ m 1553.0 600.3   13 166.5 0.3865 693.0, 2838.0 1.27
CAST/EiJ f 1227.0 485.3   33 84.48 0.3956 440.0, 3446.0 0.84
CAST/EiJ m 1268.0 468.6   30 85.56 0.3697 12.0, 2539.0 0.51
DBA/2J f 1033.0 339.1   24 69.22 0.3282 528.0, 2264.0 0.2
DBA/2J m 1270.0 353.2   24 72.1 0.2781 666.0, 1818.0 0.51
NOD/ShiLtJ f 1215.0 367.0   47 53.54 0.3021 100.0, 2153.0 0.8
NOD/ShiLtJ m 1465.0 265.3   44 39.998 0.1811 971.0, 2318.0 1.03
NZO/HlLtJ f 548.0 285.8   47 41.681 0.5215 64.0, 1542.0 -1.38
NZO/HlLtJ m 659.2 295.6   46 43.582 0.4484 54.0, 1370.0 -1.12
PWK/PhJ f 1173.0 632.8   47 92.3 0.5394 482.0, 3715.0 0.66
PWK/PhJ m 1089.0 297.8   48 42.984 0.2736 10.0, 1936.0 0.03
WSB/EiJ f 821.5 337.2   55 45.462 0.4104 483.0, 2558.0 -0.49
WSB/EiJ m 934.6 392.5   51 54.97 0.42 356.0, 2899.0 -0.38


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 492.2244897959 69.1552082929 627.9617877879 356.4871918039
129S1/SvImJ m 590.9795918367 69.1552082929 726.7168898287 455.2422938448
A/J f 691.5333333333 62.4952930051 814.1986020692 568.8680645975
A/J m 551.7213114754 61.9809197066 673.3769723533 430.0656505975
C57BL/6J f 1282.4 62.4952930051 1405.0652687358 1159.7347312642
C57BL/6J m 1400.1694915254 63.0226887942 1523.8699285608 1276.46905449
C57BL/6NJ f 1226.3846153846 134.2614266353 1489.911885794 962.8573449753
C57BL/6NJ m 1553.0769230769 134.2614266353 1816.6041934863 1289.5496526676
CAST/EiJ f 1226.696969697 84.2686358973 1392.0987843184 1061.2951550755
CAST/EiJ m 1267.7333333333 88.3816909523 1441.2082200117 1094.258446655
DBA/2J f 1033.1666666667 98.8137344679 1227.1174861676 839.2158471657
DBA/2J m 1270.2083333333 98.8137344679 1464.1591528343 1076.2575138324
NOD/ShiLtJ f 1215.0 70.6112670878 1353.5952387228 1076.4047612772
NOD/ShiLtJ m 1465.0 72.9787794293 1608.2421732942 1321.7578267058
NZO/HlLtJ f 547.9574468085 70.6112670878 686.5526855313 409.3622080857
NZO/HlLtJ m 659.1739130435 71.3746543231 799.2675222173 519.0803038696
PWK/PhJ f 1173.1914893617 70.6112670878 1311.7867280845 1034.5962506389
PWK/PhJ m 1088.5416666667 69.8718617166 1225.6856063525 951.3977269809
WSB/EiJ f 821.4545454545 65.2742046876 949.5742401468 693.3348507623
WSB/EiJ m 934.6078431373 67.7856626156 1067.6570076638 801.5586786107


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 541.6020408163 48.9001167383 637.5828046864 445.6212769463
A/J both 621.6273224044 44.0093627978 708.0085529722 535.2460918365
C57BL/6J both 1341.2847457627 44.3776997788 1428.388945255 1254.1805462704
C57BL/6NJ both 1389.7307692308 94.9371652256 1576.0726891648 1203.3888492968
CAST/EiJ both 1247.2151515151 61.0584275338 1367.0601520243 1127.370151006
DBA/2J both 1151.6875 69.8718617166 1288.8314396858 1014.5435603142
NOD/ShiLtJ both 1340.0 50.773647906 1439.6581160853 1240.3418839147
NZO/HlLtJ both 603.565679926 50.2003294797 702.098491121 505.032868731
PWK/PhJ both 1130.8665780142 49.6689744697 1228.3564497819 1033.3767062464
WSB/EiJ both 878.0311942959 47.0521462152 970.3847761827 785.6776124091




  GWAS USING LINEAR MIXED MODELS