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Project measure / variable:   CSNA03   stereotypic_counts_tot_LD_in

ID, description, units MPD:90226   stereotypic_counts_tot_LD_in   total stereotypic counts, 20 min test (LD box), founders   [n]  
Data set, strains CSNA03   inbred w/CC8   10 strains     sex: both     age: 4-14wks
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  STRAIN COMPARISON PLOT
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CSNA03 - total stereotypic counts, 20 min test (LD box), founders



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested10 strains10 strains
Mean of the strain means2523.0   n 2847.0   n
Median of the strain means2544.0   n 2856.0   n
SD of the strain means± 368.1 ± 445.7
Coefficient of variation (CV)0.1459 0.1566
Min–max range of strain means1820.0   –   2949.0   n 2170.0   –   3514.0   n
Mean sample size per strain43.5   mice 42.5   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 23147555.5381 23147555.5381 53.3074 < 0.0001
strain 9 126490637.7886 14054515.3098 32.3667 < 0.0001
sex:strain 9 4576962.1682 508551.352 1.1712 0.3102
Residuals 840 364751254.89 434227.6844


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 1820.0 1218.0   49 174.0 0.6693 210.0, 4812.0 -1.91
129S1/SvImJ m 2170.0 1153.0   49 164.7 0.5314 397.0, 4519.0 -1.52
A/J f 2492.0 714.9   60 92.29 0.2868 1146.0, 4018.0 -0.09
A/J m 2906.0 746.3   61 95.56 0.2568 1387.0, 5136.0 0.13
C57BL/6J f 2843.0 499.7   60 64.5 0.1758 1415.0, 3839.0 0.87
C57BL/6J m 3301.0 458.5   59 59.69 0.1389 2687.0, 5000.0 1.02
C57BL/6NJ f 2797.0 410.6   13 113.9 0.1468 1967.0, 3469.0 0.74
C57BL/6NJ m 3040.0 386.7   13 107.2 0.1272 2384.0, 3908.0 0.43
CAST/EiJ f 2446.0 468.6   33 81.57 0.1916 1696.0, 4164.0 -0.21
CAST/EiJ m 2553.0 482.6   30 88.12 0.1891 1379.0, 3857.0 -0.66
DBA/2J f 2856.0 555.9   24 113.5 0.1946 1920.0, 4672.0 0.9
DBA/2J m 3514.0 532.8   24 108.8 0.1516 2737.0, 4435.0 1.5
NOD/ShiLtJ f 2383.0 599.8   47 87.49 0.2517 1349.0, 4198.0 -0.38
NOD/ShiLtJ m 2806.0 406.2   44 61.24 0.1447 2055.0, 3596.0 -0.09
NZO/HlLtJ f 2949.0 607.0   47 88.54 0.2059 1618.0, 4880.0 1.16
NZO/HlLtJ m 3204.0 519.3   46 76.57 0.1621 2407.0, 4924.0 0.8
PWK/PhJ f 2597.0 717.8   47 104.7 0.2764 1545.0, 4565.0 0.2
PWK/PhJ m 2770.0 495.7   48 71.55 0.179 1745.0, 3760.0 -0.17
WSB/EiJ f 2050.0 390.2   55 52.62 0.1904 1528.0, 3583.0 -1.29
WSB/EiJ m 2202.0 486.0   51 68.05 0.2207 1374.0, 3737.0 -1.45


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 1819.693877551 94.1370781223 2004.4653928223 1634.9223622798
129S1/SvImJ m 2170.1020408163 94.1370781223 2354.8735560876 1985.3305255451
A/J f 2492.2 85.0713116933 2659.1773003498 2325.2226996502
A/J m 2905.9672131148 84.3711243815 3071.5701913254 2740.3642349041
C57BL/6J f 2842.5833333333 85.0713116933 3009.5606336831 2675.6060329836
C57BL/6J m 3300.5593220339 85.7892257856 3468.945738508 3132.1729055598
C57BL/6NJ f 2797.0769230769 182.7624949728 3155.8017082992 2438.3521378547
C57BL/6NJ m 3040.2307692308 182.7624949728 3398.955554453 2681.5059840085
CAST/EiJ f 2446.1212121212 114.7101332863 2671.2733579818 2220.9690662606
CAST/EiJ m 2552.7666666667 120.3090027655 2788.9082294297 2316.6251039036
DBA/2J f 2856.2083333333 134.5095542444 3120.222626659 2592.1940400077
DBA/2J m 3514.0416666667 134.5095542444 3778.0559599923 3250.027373341
NOD/ShiLtJ f 2382.8085106383 96.1191286996 2571.4703791669 2194.1466421097
NOD/ShiLtJ m 2806.3636363636 99.3418894975 3001.3511143955 2611.3761583318
NZO/HlLtJ f 2948.6170212766 96.1191286996 3137.2788898052 2759.955152748
NZO/HlLtJ m 3204.0869565217 97.1582846154 3394.7884720948 3013.3854409487
PWK/PhJ f 2597.0425531915 96.1191286996 2785.7044217201 2408.3806846629
PWK/PhJ m 2769.9375 95.1126179406 2956.6237971407 2583.2512028593
WSB/EiJ f 2049.8181818182 88.8540871719 2224.2202840744 1875.416079562
WSB/EiJ m 2201.7647058823 92.2727929643 2382.8770169333 2020.6523948314


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 1994.8979591837 66.5649663014 2125.5511506021 1864.2447677653
A/J both 2699.0836065574 59.9074592655 2816.6694956176 2581.4977174972
C57BL/6J both 3071.5713276836 60.4088555886 3190.1413534965 2953.0013018707
C57BL/6NJ both 2918.6538461538 129.2325995418 3172.3105743642 2664.9971179435
CAST/EiJ both 2499.4439393939 83.1153879029 2662.5821679379 2336.30571085
DBA/2J both 3185.125 95.1126179406 3371.8112971407 2998.4387028593
NOD/ShiLtJ both 2594.586073501 69.1152984348 2730.2450367378 2458.9271102642
NZO/HlLtJ both 3076.3519888992 68.3348724506 3210.479138163 2942.2248396353
PWK/PhJ both 2683.4900265957 67.6115688945 2816.1974813382 2550.7825718533
WSB/EiJ both 2125.7914438503 64.0494284295 2251.5071573526 2000.0757303479




  GWAS USING LINEAR MIXED MODELS