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Project measure / variable:   CSNA03   vert_time_dark_LD_in

ID, description, units MPD:90196   vert_time_dark_LD_in   vertical time in dark, 20 min test (LD box), founders   [s]  
Data set, strains CSNA03   inbred w/CC8   10 strains     sex: both     age: 4-14wks
Procedure light-dark box
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  STRAIN COMPARISON PLOT
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CSNA03 - vertical time in dark, 20 min test (LD box), founders



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested10 strains10 strains
Mean of the strain means37.241   s 51.05   s
Median of the strain means33.189   s 45.792   s
SD of the strain means± 25.051 ± 18.145
Coefficient of variation (CV)0.6727 0.3554
Min–max range of strain means7.8049   –   100.1   s 30.717   –   79.27   s
Mean sample size per strain43.5   mice 42.5   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 43040.4754 43040.4754 6.0123 0.0144
strain 9 334385.5259 37153.9473 5.19 < 0.0001
sex:strain 9 61853.367 6872.5963 0.96 0.4719
Residuals 840 6013359.5203 7158.7613


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 7.8049 43.366   49 6.1951 5.5562 -1.18
129S1/SvImJ m 46.987 186.9   49 26.703 3.9781 -0.22
A/J f 36.013 115.0   60 14.84 3.1919 -0.05
A/J m 35.51 67.32   61 8.6197 1.8959 -0.86
C57BL/6J f 49.588 83.31   60 10.755 1.68 0.49
C57BL/6J m 75.75 103.5   59 13.48 1.3669 11.72, 401.3 1.36
C57BL/6NJ f 31.271 52.13   13 14.458 1.667 0.08, 201.6 -0.24
C57BL/6NJ m 30.717 16.553   13 4.591 0.5389 0.8, 56.88 -1.12
CAST/EiJ f 22.12 37.509   33 6.5294 1.6957 2.0, 174.6 -0.6
CAST/EiJ m 44.597 69.03   30 12.603 1.5478 0.08, 250.3 -0.36
DBA/2J f 42.915 37.924   24 7.7412 0.8837 17.32, 211.2 0.23
DBA/2J m 65.97 68.38   24 13.958 1.0365 19.72, 294.4 0.82
NOD/ShiLtJ f 35.106 57.42   47 8.3761 1.6357 0.32, 268.9 -0.09
NOD/ShiLtJ m 61.43 85.75   44 12.927 1.3959 10.52, 310.8 0.57
NZO/HlLtJ f 100.1 125.6   47 18.319 1.2542 17.08, 574.6 2.51
NZO/HlLtJ m 79.27 56.87   46 8.3851 0.7174 34.92, 425.9 1.56
PWK/PhJ f 26.108 40.615   47 5.9243 1.5557 3.52, 191.4 -0.44
PWK/PhJ m 36.912 48.954   48 7.066 1.3262 -0.78
WSB/EiJ f 21.388 43.413   55 5.8539 2.0298 1.68, 193.7 -0.63
WSB/EiJ m 33.351 59.03   51 8.2656 1.7699 -0.98


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 7.8048979592 12.0870662311 31.5292963285 -15.9195004102
129S1/SvImJ m 46.9869387755 12.0870662311 70.7113371449 23.2625404062
A/J f 36.0133333333 10.9230347841 57.4529799494 14.5736867172
A/J m 35.5098360656 10.8331317344 56.773021684 14.2466504471
C57BL/6J f 49.5878333333 10.9230347841 71.0274799494 28.1481867172
C57BL/6J m 75.7501694915 11.015213927 97.3707446032 54.1295943799
C57BL/6NJ f 31.2707692308 23.4664430356 77.3305187386 -14.788980277
C57BL/6NJ m 30.7169230769 23.4664430356 76.7766725847 -15.3428264309
CAST/EiJ f 22.12 14.7286170982 51.0292135997 -6.7892135997
CAST/EiJ m 44.5966666667 15.4475039339 74.9169056836 14.2764276497
DBA/2J f 42.915 17.2708344395 76.814057768 9.015942232
DBA/2J m 65.9741666667 17.2708344395 99.8732244347 32.0751088987
NOD/ShiLtJ f 35.1061702128 12.3415586912 59.3300843778 10.8822560477
NOD/ShiLtJ m 61.4315909091 12.7553565697 86.4677042898 36.3954775284
NZO/HlLtJ f 100.1378723404 12.3415586912 124.3617865055 75.9139581754
NZO/HlLtJ m 79.2708695652 12.474984825 103.7566714944 54.785067636
PWK/PhJ f 26.1076595745 12.3415586912 50.3315737395 1.8837454094
PWK/PhJ m 36.911875 12.2123241489 60.8821286236 12.9416213764
WSB/EiJ f 21.3883636364 11.4087377468 43.781344201 -1.0046169283
WSB/EiJ m 33.3509803922 11.8476946824 56.6055421717 10.0964186127


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 27.3959183673 8.5468464966 44.1716013339 10.6202354008
A/J both 35.7615846995 7.6920321123 50.8594447272 20.6637246717
C57BL/6J both 62.6690014124 7.7564106833 77.8932231921 47.4447796328
C57BL/6NJ both 30.9938461538 16.5932810008 63.5630073706 -1.5753150629
CAST/EiJ both 33.3583333333 10.671896966 54.3050486188 12.4116180479
DBA/2J both 54.4445833333 12.2123241489 78.4148369569 30.4743297098
NOD/ShiLtJ both 48.2688805609 8.874305496 65.6872974716 30.8504636503
NZO/HlLtJ both 89.7043709528 8.7740999156 106.9261051395 72.4826367661
PWK/PhJ both 31.5097672872 8.6812287731 48.5492147273 14.4703198471
WSB/EiJ both 27.3696720143 8.2238550307 43.5113898761 11.2279541524




  GWAS USING LINEAR MIXED MODELS