Project measure / variable:   CSNA03   vert_time_light_LD_in

ID, description, units MPD:90193   vert_time_light_LD_in   vertical time in light, 20 min test (LD box), founders   [s]  
Data set, strains CSNA03   inbred w/CC8   10 strains     sex: both     age: 4-14wks
Procedure light-dark box
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  STRAIN COMPARISON PLOT
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CSNA03 - vertical time in light, 20 min test (LD box), founders



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested10 strains10 strains
Mean of the strain means26.272   s 42.516   s
Median of the strain means28.32   s 36.501   s
SD of the strain means± 11.656 ± 22.973
Coefficient of variation (CV)0.4437 0.5403
Min–max range of strain means2.8233   –   39.907   s 9.5076   –   74.05   s
Mean sample size per strain43.5   mice 42.5   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 42348.5559 42348.5559 15.4525 < 0.0001
strain 9 232499.6456 25833.294 9.4263 < 0.0001
sex:strain 9 41285.1201 4587.2356 1.6738 0.0911
Residuals 840 2302073.8963 2740.5642


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page:
Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 2.8233 12.537   49 1.791 4.4406 -2.01
129S1/SvImJ m 9.5076 37.224   49 5.3177 3.9152 -1.44
A/J f 25.788 119.3   60 15.397 4.6249 -0.04
A/J m 20.088 52.5   61 6.7221 2.6135 -0.98
C57BL/6J f 39.907 55.38   60 7.1492 1.3877 2.48, 268.8 1.17
C57BL/6J m 74.05 73.59   59 9.5806 0.9938 11.56, 336.5 1.37
C57BL/6NJ f 32.603 38.838   13 10.772 1.1912 5.8, 155.0 0.54
C57BL/6NJ m 66.89 33.389   13 9.2604 0.4992 37.72, 160.9 1.06
CAST/EiJ f 19.092 22.018   33 3.8328 1.1532 0.8, 86.28 -0.62
CAST/EiJ m 38.241 43.031   30 7.8564 1.1253 0.08, 140.3 -0.19
DBA/2J f 34.17 21.95   24 4.4805 0.6424 8.52, 117.6 0.68
DBA/2J m 54.68 34.05   24 6.9505 0.6227 19.52, 160.9 0.53
NOD/ShiLtJ f 39.625 48.95   47 7.14 1.2353 0.08, 251.8 1.15
NOD/ShiLtJ m 72.22 70.68   44 10.656 0.9788 21.48, 295.2 1.29
NZO/HlLtJ f 30.852 27.127   47 3.9568 0.8792 1.52, 119.0 0.39
NZO/HlLtJ m 34.76 26.279   46 3.8746 0.756 0.04, 156.5 -0.34
PWK/PhJ f 22.507 28.244   47 4.1198 1.2549 4.72, 128.4 -0.32
PWK/PhJ m 26.654 26.982   48 3.8946 1.0123 -0.69
WSB/EiJ f 15.351 24.989   55 3.3695 1.6278 1.8, 109.8 -0.94
WSB/EiJ m 28.073 43.661   51 6.1137 1.5552 -0.63


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 2.8232653061 7.4786282741 17.5022579615 -11.8557273493
129S1/SvImJ m 9.5075510204 7.4786282741 24.1865436758 -5.171441635
A/J f 25.7876666667 6.7584073102 39.0530152885 12.5223180449
A/J m 20.0883606557 6.7027816128 33.2445275968 6.9321937147
C57BL/6J f 39.9073333333 6.7584073102 53.1726819551 26.6419847115
C57BL/6J m 74.0503389831 6.8154412945 87.4276334598 60.6730445063
C57BL/6NJ f 32.6030769231 14.519387999 61.1016172952 4.1045365509
C57BL/6NJ m 66.8876923077 14.519387999 95.3862326799 38.3891519355
CAST/EiJ f 19.0921212121 9.113034558 36.9791136448 1.2051287794
CAST/EiJ m 38.2406666667 9.5578312782 57.0007025972 19.4806307361
DBA/2J f 34.17 10.6859802277 55.1443578005 13.1956421995
DBA/2J m 54.6775 10.6859802277 75.6518578005 33.7031421995
NOD/ShiLtJ f 39.6253191489 7.6360903473 54.6133771211 24.6372611768
NOD/ShiLtJ m 72.2181818182 7.8921194328 87.7087716622 56.7275919742
NZO/HlLtJ f 30.8521276596 7.6360903473 45.8401856317 15.8640696874
NZO/HlLtJ m 34.76 7.7186450746 49.9100957405 19.6099042595
PWK/PhJ f 22.5065957447 7.6360903473 37.4946537168 7.5185377725
PWK/PhJ m 26.65375 7.5561290826 41.4848606318 11.8226393682
WSB/EiJ f 15.3512727273 7.0589262153 29.2064774884 1.4960679662
WSB/EiJ m 28.0733333333 7.3305219597 42.4616240816 13.6850425851


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 6.1654081633 5.2881887666 16.5450234109 -4.2142070843
A/J both 22.9380136612 4.7592896192 32.2795098294 13.596517493
C57BL/6J both 56.9788361582 4.7991225607 66.39851611 47.5591562064
C57BL/6NJ both 49.7453846154 10.2667577128 69.8968957665 29.5938734643
CAST/EiJ both 28.6663939394 6.6030208541 41.6267512493 15.7060366295
DBA/2J both 44.42375 7.5561290826 59.2548606318 29.5926393682
NOD/ShiLtJ both 55.9217504836 5.4907974133 66.6990443866 45.1444565805
NZO/HlLtJ both 32.8060638298 5.4287972328 43.4616642671 22.1504633924
PWK/PhJ both 24.5801728723 5.3713350879 35.1229870643 14.0373586803
WSB/EiJ both 21.7123030303 5.088344316 31.6996651649 11.7249408957




  GWAS USING LINEAR MIXED MODELS