Project measure / variable:   CSNA03   vert_time_tot_LD_in

ID, description, units MPD:90190   vert_time_tot_LD_in   total vertical time, 20 min test (LD box), founders   [s]  
Data set, strains CSNA03   inbred w/CC8   10 strains     sex: both     age: 4-14wks
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  STRAIN COMPARISON PLOT
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CSNA03 - total vertical time, 20 min test (LD box), founders



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested10 strains10 strains
Mean of the strain means63.52   s 93.57   s
Median of the strain means62.83   s 90.22   s
SD of the strain means± 32.957 ± 34.638
Coefficient of variation (CV)0.5189 0.3702
Min–max range of strain means10.629   –   131.0   s 55.6   –   149.8   s
Mean sample size per strain43.5   mice 42.5   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 170766.3448 170766.3448 11.9122 0.0006
strain 9 862384.0929 95820.4548 6.6842 < 0.0001
sex:strain 9 153310.8896 17034.5433 1.1883 0.2989
Residuals 840 12041755.7137 14335.4235


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page:
Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 10.629 55.81   49 7.9723 5.2504 -1.6
129S1/SvImJ m 56.5 202.8   49 28.978 3.5902 -1.07
A/J f 61.8 165.8   60 21.411 2.6836 2.28, 915.4 -0.05
A/J m 55.6 112.1   61 14.354 2.0163 2.0, 617.4 -1.1
C57BL/6J f 89.5 131.1   60 16.928 1.4651 4.28, 485.1 0.79
C57BL/6J m 149.8 172.3   59 22.432 1.1503 23.28, 671.4 1.62
C57BL/6NJ f 63.87 89.04   13 24.694 1.3939 13.64, 356.6 0.01
C57BL/6NJ m 97.61 41.939   13 11.632 0.4297 52.32, 213.1 0.12
CAST/EiJ f 41.215 57.58   33 10.023 1.397 2.8, 260.9 -0.68
CAST/EiJ m 82.84 107.1   30 19.559 1.2933 0.16, 352.2 -0.31
DBA/2J f 77.08 58.41   24 11.922 0.7577 25.84, 328.8 0.41
DBA/2J m 120.7 96.55   24 19.707 0.8002 48.12, 430.8 0.78
NOD/ShiLtJ f 74.73 105.4   47 15.367 1.4097 2.64, 520.7 0.34
NOD/ShiLtJ m 133.6 155.5   44 23.442 1.1635 38.6, 575.2 1.16
NZO/HlLtJ f 131.0 146.6   47 21.385 1.1192 20.6, 647.5 2.05
NZO/HlLtJ m 114.0 78.85   46 11.626 0.6915 42.96, 582.4 0.59
PWK/PhJ f 48.616 64.43   47 9.3975 1.3252 9.04, 305.2 -0.45
PWK/PhJ m 63.57 73.95   48 10.673 1.1633 -0.87
WSB/EiJ f 36.743 63.8   55 8.6026 1.7364 6.1, 280.7 -0.81
WSB/EiJ m 61.43 96.9   51 13.569 1.5776 -0.93


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 10.6289795918 17.1043755404 44.2013131442 -22.9433539605
129S1/SvImJ m 56.4989795918 17.1043755404 90.0713131442 22.9266460395
A/J f 61.8 15.4571577102 92.139187373 31.460812627
A/J m 55.5995081967 15.3299361417 85.6889860775 25.510030316
C57BL/6J f 89.4958333333 15.4571577102 119.8350207063 59.1566459603
C57BL/6J m 149.7974576271 15.5876001723 180.3926764369 119.2022388173
C57BL/6NJ f 63.8738461538 33.2073016399 129.0528761861 -1.3051838784
C57BL/6NJ m 97.6061538462 33.2073016399 162.7851838784 32.4271238139
CAST/EiJ f 41.2151515152 20.8424272046 82.1245034234 0.3057996069
CAST/EiJ m 82.8353333333 21.8597220695 125.7414235876 39.9292430791
DBA/2J f 77.0833333333 24.4399122583 125.053800562 29.1128661047
DBA/2J m 120.6525 24.4399122583 168.6229672287 72.6820327713
NOD/ShiLtJ f 74.7314893617 17.4645071494 109.0106863989 40.4522923245
NOD/ShiLtJ m 133.6475 18.0500714357 169.0760380049 98.2189619951
NZO/HlLtJ f 130.99 17.4645071494 165.2691970372 96.7108029628
NZO/HlLtJ m 114.0302173913 17.6533181194 148.6800111128 79.3804236698
PWK/PhJ f 48.6159574468 17.4645071494 82.895154484 14.3367604096
PWK/PhJ m 63.565 17.2816276895 97.4852426741 29.6447573259
WSB/EiJ f 36.7425454545 16.1444746916 68.4307931835 5.0542977256
WSB/EiJ m 61.4254901961 16.7656414932 94.3329592294 28.5180211627


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 33.5639795918 12.0946199326 57.3032043069 9.8247548767
A/J both 58.6997540984 10.8849743521 80.0646959985 37.3348121982
C57BL/6J both 119.6466454802 10.9760762981 141.1904015622 98.1028893983
C57BL/6NJ both 80.74 23.4811081745 126.8285341269 34.651465873
CAST/EiJ both 62.0252424242 15.1017732463 91.6668839715 32.383600877
DBA/2J both 98.8679166667 17.2816276895 132.7881593407 64.9476739926
NOD/ShiLtJ both 104.1894946809 12.5580062988 128.8382505048 79.5407388569
NZO/HlLtJ both 122.5101086957 12.4162056462 146.8805393159 98.1396780755
PWK/PhJ both 56.0904787234 12.2847839376 80.2029558493 31.9780015975
WSB/EiJ both 49.0840178253 11.6375555611 71.9261201931 26.2419154576




  GWAS USING LINEAR MIXED MODELS