Project measure / variable:   CSNA03   jump_time_dark_LD_in

ID, description, units MPD:90184   jump_time_dark_LD_in   jump time in dark, 20 min test (LD box), founders   [s]  
Data set, strains CSNA03   inbred w/CC8   10 strains     sex: both     age: 4-14wks
Procedure light-dark box
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  STRAIN COMPARISON PLOT
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CSNA03 - jump time in dark, 20 min test (LD box), founders



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested10 strains10 strains
Mean of the strain means172.8   s 132.8   s
Median of the strain means206.4   s 146.8   s
SD of the strain means± 90.66 ± 79.71
Coefficient of variation (CV)0.5248 0.6004
Min–max range of strain means19.993   –   277.6   s 13.946   –   252.0   s
Mean sample size per strain43.5   mice 42.5   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 289725.0679 289725.0679 70.7996 < 0.0001
strain 9 6397972.8787 710885.8754 173.718 < 0.0001
sex:strain 9 72077.4415 8008.6046 1.957 0.0414
Residuals 840 3437434.8044 4092.1843


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 19.993 42.882   49 6.126 2.1449 -1.69
129S1/SvImJ m 13.946 18.915   49 2.7021 1.3562 -1.49
A/J f 61.58 83.42   60 10.77 1.3546 -1.23
A/J m 35.164 49.436   61 6.3296 1.4059 -1.22
C57BL/6J f 204.1 76.99   60 9.9393 0.3772 0.35
C57BL/6J m 156.8 53.6   59 6.9783 0.3418 9.44, 303.0 0.3
C57BL/6NJ f 208.8 87.64   13 24.307 0.4196 70.0, 411.7 0.4
C57BL/6NJ m 136.8 58.03   13 16.096 0.4242 27.32, 254.7 0.05
CAST/EiJ f 243.9 65.31   33 11.37 0.2678 24.64, 398.9 0.78
CAST/EiJ m 190.0 62.63   30 11.435 0.3296 2.88, 267.4 0.72
DBA/2J f 185.4 50.08   24 10.222 0.2701 84.76, 252.7 0.14
DBA/2J m 112.6 42.81   24 8.7385 0.3803 43.04, 225.2 -0.25
NOD/ShiLtJ f 234.5 67.08   47 9.7846 0.286 82.64, 444.5 0.68
NOD/ShiLtJ m 199.4 63.55   44 9.5808 0.3187 93.56, 311.1 0.84
NZO/HlLtJ f 60.65 32.408   47 4.7273 0.5343 -1.24
NZO/HlLtJ m 44.72 17.873   46 2.6353 0.3997 15.84, 98.6 -1.1
PWK/PhJ f 231.1 94.08   47 13.722 0.4071 0.64
PWK/PhJ m 186.2 71.1   48 10.263 0.3819 0.28, 378.9 0.67
WSB/EiJ f 277.6 85.8   55 11.57 0.309 20.2, 530.1 1.16
WSB/EiJ m 252.0 76.18   51 10.667 0.3023 1.5


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 19.9928571429 9.1385975468 37.9300244085 2.0556898772
129S1/SvImJ m 13.9463265306 9.1385975468 31.8834937963 -3.990840735
A/J f 61.583 8.2585150915 77.7927483562 45.3732516438
A/J m 35.1636065574 8.190542618 51.2399390781 19.0872740367
C57BL/6J f 204.112 8.2585150915 220.3217483562 187.9022516438
C57BL/6J m 156.8125423729 8.3282084376 173.1590842796 140.4660004661
C57BL/6NJ f 208.8446153846 17.7421364835 243.6687410915 174.0204896777
C57BL/6NJ m 136.8138461538 17.7421364835 171.6379718608 101.9897204469
CAST/EiJ f 243.9315151515 11.1357794777 265.7887353761 222.0742949269
CAST/EiJ m 190.028 11.6793040475 212.952045968 167.103954032
DBA/2J f 185.3966666667 13.05785889 211.0265292185 159.7668041148
DBA/2J m 112.5541666667 13.05785889 138.1840292185 86.9243041148
NOD/ShiLtJ f 234.5208510638 9.3310101743 252.8356843187 216.2060178089
NOD/ShiLtJ m 199.3877272727 9.6438679186 218.3166352434 180.4588193021
NZO/HlLtJ f 60.6521276596 9.3310101743 78.9669609145 42.3372944047
NZO/HlLtJ m 44.7202173913 9.4318888917 63.233054598 26.2073801846
PWK/PhJ f 231.1034042553 9.3310101743 249.4182375102 212.7885710004
PWK/PhJ m 186.1733333333 9.2333005689 204.2963829446 168.050283722
WSB/EiJ f 277.6450909091 8.6257376928 294.575620894 260.7145609242
WSB/EiJ m 252.0137254902 8.9576172985 269.5956661504 234.43178483


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 16.9695918367 6.4619642959 29.6530844455 4.2860992279
A/J both 48.3733032787 5.8156697786 59.7882541008 36.9583524566
C57BL/6J both 180.4622711864 5.8643441086 191.9727596001 168.9517827728
C57BL/6NJ both 172.8292307692 12.5455850203 197.4536062055 148.204855333
CAST/EiJ both 216.9797575758 8.0686387887 232.8168182207 201.1426969308
DBA/2J both 148.9754166667 9.2333005689 167.098466278 130.8523670554
NOD/ShiLtJ both 216.9542891683 6.7095443084 230.123729875 203.7848484615
NZO/HlLtJ both 52.6861725254 6.6337824606 65.7069084743 39.6654365766
PWK/PhJ both 208.6383687943 6.5635659185 221.5212842676 195.755453321
WSB/EiJ both 264.8294081996 6.2177620253 277.0335825157 252.6252338836




  GWAS USING LINEAR MIXED MODELS