Phenotype measure:   Peters2   Retic

ID, description, units MPD:6517   Retic   reticulocyte differential (percent of total RBC)   [%]
Data set, strains Peters2   AXB BXA   28 strains     sex: both     age: 11wks
Procedure complete blood count
Ontology mappings

  STRAIN COMPARISON PLOT
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Peters2 - reticulocyte differential (percent of total RBC)



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested28 strains28 strains
Mean of the strain means3.26   % 3.91   %
Median of the strain means3.16   % 3.79   %
SD of the strain means± 0.906 ± 0.859
Coefficient of variation (CV)0.278 0.220
Min–max range of strain means1.86   –   5.31   % 2.08   –   5.59   %
Mean sample size per strain7.7   mice 7.9   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 44.9768 44.9768 40.6933 < 0.0001
strain 27 257.3058 9.5298 8.6222 < 0.0001
sex:strain 27 68.0985 2.5222 2.282 0.0004
Residuals 393 434.3689 1.1053


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
AXB10/PgnJ f 2.94 0.683   7 0.258 0.232 2.0, 3.9 -0.35
AXB10/PgnJ m 2.73 1.21   8 0.428 0.444 1.6, 5.5 -1.37
AXB12/PgnJ f 2.19 1.48   10 0.467 0.674 1.0, 4.7 -1.18
AXB12/PgnJ m 2.08 1.04   8 0.368 0.501 0.7, 4.3 -2.13
AXB13/PgnJ f 3.15 1.05   8 0.371 0.333 1.5, 4.2 -0.12
AXB13/PgnJ m 4.06 1.28   8 0.453 0.315 1.5, 5.8 0.17
AXB15/PgnJ f 3.94 1.17   8 0.415 0.298 2.3, 5.6 0.75
AXB15/PgnJ m 5.33 0.698   8 0.247 0.131 4.4, 6.6 1.65
AXB19a/PgnJ f 2.9 1.03   8 0.364 0.355 1.0, 4.4 -0.4
AXB19a/PgnJ m 3.57 0.956   8 0.338 0.267 2.5, 5.5 -0.4
AXB19b/PgnJ f 3.4 1.76   7 0.664 0.516 0.8, 5.1 0.15
AXB19b/PgnJ m 4.9 1.31   8 0.463 0.267 3.0, 7.0 1.15
AXB19/PgnJ f 3.16 0.674   8 0.238 0.213 2.4, 4.4 -0.11
AXB19/PgnJ m 3.1 0.428   8 0.151 0.138 2.3, 3.5 -0.94
AXB1/PgnJ f 1.86 0.792   5 0.354 0.426 1.0, 3.0 -1.55
AXB1/PgnJ m 3.84 0.923   8 0.326 0.24 2.7, 5.5 -0.08
AXB23/PgnJ f 2.68 1.04   5 0.464 0.387 1.6, 4.4 -0.64
AXB23/PgnJ m 4.63 0.571   7 0.216 0.123 3.9, 5.4 0.84
AXB24/PgnJ f 3.45 1.0   8 0.355 0.291 1.9, 4.7 0.21
AXB24/PgnJ m 5.36 1.37   8 0.484 0.255 2.2, 6.9 1.69
AXB2/PgnJ f 2.36 0.329   8 0.116 0.139 2.0, 2.9 -0.99
AXB2/PgnJ m 3.56 0.58   8 0.205 0.163 2.9, 4.4 -0.41
AXB4/PgnJ f 4.4 1.78   6 0.728 0.406 2.7, 6.8 1.26
AXB4/PgnJ m 4.54 1.26   9 0.421 0.278 3.0, 6.5 0.73
AXB5/PgnJ f 2.93 0.787   7 0.297 0.269 2.1, 4.1 -0.37
AXB5/PgnJ m 3.37 0.607   7 0.23 0.18 2.4, 4.2 -0.63
AXB6/PgnJ f 2.63 0.757   7 0.286 0.288 1.6, 4.1 -0.7
AXB6/PgnJ m 2.4 0.316   6 0.129 0.132 2.0, 2.9 -1.76
AXB8/PgnJ f 2.51 1.11   7 0.418 0.44 1.5, 4.6 -0.83
AXB8/PgnJ m 3.98 1.79   8 0.632 0.45 2.2, 7.5 0.08
BXA11/PgnJ f 4.05 0.545   8 0.193 0.135 3.2, 4.7 0.87
BXA11/PgnJ m 4.6 1.38   8 0.486 0.299 3.1, 7.7 0.8
BXA12/PgnJ f 4.08 0.602   8 0.213 0.148 2.8, 4.7 0.9
BXA12/PgnJ m 3.34 1.32   8 0.466 0.395 1.2, 4.9 -0.66
BXA13/PgnJ f 5.31 1.04   8 0.367 0.195 3.3, 6.4 2.26
BXA13/PgnJ m 4.9 0.431   8 0.152 0.0879 4.3, 5.7 1.15
BXA14/PgnJ f 3.8 0.927   8 0.328 0.244 2.2, 4.9 0.6
BXA14/PgnJ m 3.93 1.04   8 0.366 0.264 2.1, 5.0 0.02
BXA16/PgnJ f 5.07 1.87   8 0.659 0.368 3.5, 9.3 2.0
BXA16/PgnJ m 4.29 0.606   8 0.214 0.141 3.2, 5.0 0.44
BXA1/PgnJ f 2.4 0.725   8 0.256 0.302 1.5, 3.9 -0.95
BXA1/PgnJ m 3.75 0.729   6 0.297 0.194 2.6, 4.6 -0.19
BXA24/PgnJ f 2.01 1.83   8 0.647 0.91 0.5, 4.5 -1.38
BXA24/PgnJ m 3.54 1.2   8 0.425 0.34 1.9, 5.1 -0.43
BXA25/PgnJ f 3.89 0.508   8 0.18 0.131 3.1, 4.8 0.69
BXA25/PgnJ m 4.08 0.812   8 0.287 0.199 3.4, 5.7 0.2
BXA26/PgnJ f 2.5 0.925   9 0.308 0.37 1.3, 3.7 -0.84
BXA26/PgnJ m 3.59 1.12   7 0.423 0.312 1.5, 5.2 -0.37
BXA2/PgnJ f 2.36 1.02   8 0.359 0.43 1.2, 3.8 -0.99
BXA2/PgnJ m 3.28 1.56   10 0.492 0.474 1.4, 5.6 -0.73
BXA4/PgnJ f 3.36 0.389   8 0.138 0.116 2.7, 3.8 0.11
BXA4/PgnJ m 3.51 0.675   8 0.239 0.192 2.7, 4.3 -0.47
BXA7/PgnJ f 4.51 0.391   8 0.138 0.0866 4.0, 5.0 1.38
BXA7/PgnJ m 5.59 0.979   8 0.346 0.175 4.0, 7.3 1.96
BXA8/PgnJ f 3.46 0.951   16 0.238 0.275 2.2, 5.8 0.22
BXA8/PgnJ m 3.63 0.935   15 0.241 0.257 2.1, 5.1 -0.33


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
AXB10/PgnJ f 2.9429 0.3974 3.7241 2.1616
AXB10/PgnJ m 2.725 0.3717 3.4558 1.9942
AXB12/PgnJ f 2.19 0.3325 2.8436 1.5364
AXB12/PgnJ m 2.075 0.3717 2.8058 1.3442
AXB13/PgnJ f 3.15 0.3717 3.8808 2.4192
AXB13/PgnJ m 4.0625 0.3717 4.7933 3.3317
AXB15/PgnJ f 3.9375 0.3717 4.6683 3.2067
AXB15/PgnJ m 5.325 0.3717 6.0558 4.5942
AXB19a/PgnJ f 2.9 0.3717 3.6308 2.1692
AXB19a/PgnJ m 3.575 0.3717 4.3058 2.8442
AXB19b/PgnJ f 3.4 0.3974 4.1812 2.6188
AXB19b/PgnJ m 4.9 0.3717 5.6308 4.1692
AXB19/PgnJ f 3.1625 0.3717 3.8933 2.4317
AXB19/PgnJ m 3.1 0.3717 3.8308 2.3692
AXB1/PgnJ f 1.86 0.4702 2.7843 0.9357
AXB1/PgnJ m 3.8375 0.3717 4.5683 3.1067
AXB23/PgnJ f 2.68 0.4702 3.6043 1.7557
AXB23/PgnJ m 4.6286 0.3974 5.4098 3.8474
AXB24/PgnJ f 3.45 0.3717 4.1808 2.7192
AXB24/PgnJ m 5.3625 0.3717 6.0933 4.6317
AXB2/PgnJ f 2.3625 0.3717 3.0933 1.6317
AXB2/PgnJ m 3.5625 0.3717 4.2933 2.8317
AXB4/PgnJ f 4.4 0.4292 5.2438 3.5562
AXB4/PgnJ m 4.5444 0.3504 5.2334 3.8555
AXB5/PgnJ f 2.9286 0.3974 3.7098 2.1474
AXB5/PgnJ m 3.3714 0.3974 4.1526 2.5902
AXB6/PgnJ f 2.6286 0.3974 3.4098 1.8474
AXB6/PgnJ m 2.4 0.4292 3.2438 1.5562
AXB8/PgnJ f 2.5143 0.3974 3.2955 1.7331
AXB8/PgnJ m 3.975 0.3717 4.7058 3.2442
BXA11/PgnJ f 4.05 0.3717 4.7808 3.3192
BXA11/PgnJ m 4.6 0.3717 5.3308 3.8692
BXA12/PgnJ f 4.075 0.3717 4.8058 3.3442
BXA12/PgnJ m 3.3375 0.3717 4.0683 2.6067
BXA13/PgnJ f 5.3125 0.3717 6.0433 4.5817
BXA13/PgnJ m 4.9 0.3717 5.6308 4.1692
BXA14/PgnJ f 3.8 0.3717 4.5308 3.0692
BXA14/PgnJ m 3.925 0.3717 4.6558 3.1942
BXA16/PgnJ f 5.075 0.3717 5.8058 4.3442
BXA16/PgnJ m 4.2875 0.3717 5.0183 3.5567
BXA1/PgnJ f 2.4 0.3717 3.1308 1.6692
BXA1/PgnJ m 3.75 0.4292 4.5938 2.9062
BXA24/PgnJ f 2.0125 0.3717 2.7433 1.2817
BXA24/PgnJ m 3.5375 0.3717 4.2683 2.8067
BXA25/PgnJ f 3.8875 0.3717 4.6183 3.1567
BXA25/PgnJ m 4.075 0.3717 4.8058 3.3442
BXA26/PgnJ f 2.5 0.3504 3.189 1.811
BXA26/PgnJ m 3.5857 0.3974 4.3669 2.8045
BXA2/PgnJ f 2.3625 0.3717 3.0933 1.6317
BXA2/PgnJ m 3.28 0.3325 3.9336 2.6264
BXA4/PgnJ f 3.3625 0.3717 4.0933 2.6317
BXA4/PgnJ m 3.5125 0.3717 4.2433 2.7817
BXA7/PgnJ f 4.5125 0.3717 5.2433 3.7817
BXA7/PgnJ m 5.5875 0.3717 6.3183 4.8567
BXA8/PgnJ f 3.4563 0.2628 3.973 2.9395
BXA8/PgnJ m 3.6333 0.2714 4.167 3.0997


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
AXB10/PgnJ both 2.8339 0.2721 3.3688 2.2991
AXB12/PgnJ both 2.1325 0.2493 2.6227 1.6423
AXB13/PgnJ both 3.6063 0.2628 4.123 3.0895
AXB15/PgnJ both 4.6312 0.2628 5.148 4.1145
AXB19a/PgnJ both 3.2375 0.2628 3.7542 2.7208
AXB19b/PgnJ both 4.15 0.2721 4.6849 3.6151
AXB19/PgnJ both 3.1312 0.2628 3.648 2.6145
AXB1/PgnJ both 2.8487 0.2997 3.4379 2.2596
AXB23/PgnJ both 3.6543 0.3078 4.2594 3.0492
AXB24/PgnJ both 4.4063 0.2628 4.923 3.8895
AXB2/PgnJ both 2.9625 0.2628 3.4792 2.4458
AXB4/PgnJ both 4.4722 0.277 5.0169 3.9275
AXB5/PgnJ both 3.15 0.281 3.7024 2.5976
AXB6/PgnJ both 2.5143 0.2924 3.0892 1.9393
AXB8/PgnJ both 3.2446 0.2721 3.7795 2.7098
BXA11/PgnJ both 4.325 0.2628 4.8417 3.8083
BXA12/PgnJ both 3.7063 0.2628 4.223 3.1895
BXA13/PgnJ both 5.1063 0.2628 5.623 4.5895
BXA14/PgnJ both 3.8625 0.2628 4.3792 3.3458
BXA16/PgnJ both 4.6813 0.2628 5.198 4.1645
BXA1/PgnJ both 3.075 0.2839 3.6331 2.5169
BXA24/PgnJ both 2.775 0.2628 3.2917 2.2583
BXA25/PgnJ both 3.9812 0.2628 4.498 3.4645
BXA26/PgnJ both 3.0429 0.2649 3.5637 2.522
BXA2/PgnJ both 2.8213 0.2493 3.3115 2.331
BXA4/PgnJ both 3.4375 0.2628 3.9542 2.9208
BXA7/PgnJ both 5.05 0.2628 5.5667 4.5333
BXA8/PgnJ both 3.5448 0.1889 3.9162 3.1734




  GWAS USING LINEAR MIXED MODELS