Project measure / variable:   Peters2   BASO

ID, description, units MPD:6516   BASO   basophil differential (percent of total WBC)   [%]  
Data set, strains Peters2   AXB BXA   28 strains     sex: both     age: 11wks
Procedure complete blood count
Ontology mappings

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  STRAIN COMPARISON PLOT
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Peters2 - basophil differential (percent of total WBC)

AXB5/PgnJAXB19b/PgnJAXB12/PgnJAXB8/PgnJAXB6/PgnJBXA26/PgnJAXB19/PgnJAXB19a/PgnJAXB10/PgnJAXB23/PgnJBXA1/PgnJBXA8/PgnJBXA14/PgnJAXB24/PgnJAXB15/PgnJBXA2/PgnJAXB2/PgnJBXA12/PgnJAXB4/PgnJAXB1/PgnJBXA24/PgnJBXA7/PgnJBXA25/PgnJBXA13/PgnJBXA11/PgnJBXA16/PgnJAXB13/PgnJBXA4/PgnJ % 0.00.20.40.60.81.01.21.41.61.82.02.2femalemale


  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested28 strains28 strains
Mean of the strain means0.603   % 0.524   %
Median of the strain means0.550   % 0.467   %
SD of the strain means± 0.251 ± 0.220
Coefficient of variation (CV)0.416 0.420
Min–max range of strain means0.288   –   1.20   % 0.237   –   1.16   %
Mean sample size per strain7.7   mice 7.9   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 0.8031 0.8031 8.984 0.0029
strain 27 19.446 0.7202 8.0566 < 0.0001
sex:strain 27 3.5145 0.1302 1.4561 0.0682
Residuals 393 35.1324 0.0894


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page: 1 - 10 / 56 (56)
Strain
Sex
Mean
SD
N mice
SEM
CV
Min, Max
Z score
AXB10/PgnJ f 0.814 0.549   7 0.208 0.674 0.4, 2.0 0.84
AXB10/PgnJ m 0.387 0.146   8 0.0515 0.376 0.2, 0.6 -0.62
AXB12/PgnJ f 1.11 0.418   10 0.132 0.376 0.6, 1.8 2.02
AXB12/PgnJ m 0.675 0.287   8 0.101 0.425 0.3, 1.0 0.68
AXB13/PgnJ f 0.412 0.181   8 0.0639 0.438 0.1, 0.6 -0.76
AXB13/PgnJ m 0.237 0.13   8 0.046 0.548 0.1, 0.5 -1.3
AXB15/PgnJ f 0.512 0.419   8 0.148 0.818 0.1, 1.5 -0.36
AXB15/PgnJ m 0.463 0.35   8 0.124 0.757 0.2, 1.1 -0.28
AXB19a/PgnJ f 0.713 0.569   8 0.201 0.799 0.4, 2.1 0.44
AXB19a/PgnJ m 0.588 0.217   8 0.0766 0.369 0.3, 1.0 0.29
AXB19b/PgnJ f 1.13 0.736   7 0.278 0.653 0.5, 2.2 2.1
AXB19b/PgnJ m 0.875 0.315   8 0.111 0.36 0.2, 1.2 1.59
AXB19/PgnJ f 0.812 0.449   8 0.159 0.552 0.3, 1.6 0.84
AXB19/PgnJ m 0.513 0.146   8 0.0515 0.284 0.3, 0.7 -0.05
AXB1/PgnJ f 0.4 0.245   5 0.11 0.612 0.2, 0.8 -0.81
AXB1/PgnJ m 0.5 0.239   8 0.0845 0.478 0.1, 0.8 -0.11
AXB23/PgnJ f 0.64 0.241   5 0.108 0.376 0.4, 0.9 0.15
AXB23/PgnJ m 0.529 0.229   7 0.0865 0.433 0.1, 0.8 0.02
AXB24/PgnJ f 0.562 0.256   8 0.0905 0.455 0.3, 0.9 -0.16
AXB24/PgnJ m 0.425 0.198   8 0.0701 0.466 0.3, 0.9 -0.45
AXB2/PgnJ f 0.55 0.141   8 0.05 0.257 0.4, 0.8 -0.21
AXB2/PgnJ m 0.375 0.0886   8 0.0313 0.236 0.2, 0.5 -0.68
AXB4/PgnJ f 0.55 0.302   6 0.123 0.548 0.2, 0.9 -0.21
AXB4/PgnJ m 0.367 0.166   9 0.0553 0.452 0.2, 0.6 -0.71
AXB5/PgnJ f 1.2 0.346   7 0.131 0.289 0.7, 1.7 2.38
AXB5/PgnJ m 1.16 0.565   7 0.214 0.489 0.6, 2.1 2.88
AXB6/PgnJ f 0.8 0.153   7 0.0577 0.191 0.6, 1.0 0.79
AXB6/PgnJ m 0.85 0.308   6 0.126 0.363 0.5, 1.3 1.48
AXB8/PgnJ f 0.814 0.329   7 0.124 0.404 0.4, 1.2 0.84
AXB8/PgnJ m 0.95 0.521   8 0.184 0.548 0.2, 1.6 1.93
BXA11/PgnJ f 0.3 0.131   8 0.0463 0.436 0.2, 0.6 -1.21
BXA11/PgnJ m 0.4 0.141   8 0.05 0.354 0.2, 0.6 -0.56
BXA12/PgnJ f 0.437 0.16   8 0.0565 0.365 0.2, 0.7 -0.66
BXA12/PgnJ m 0.488 0.259   8 0.0915 0.531 0.1, 0.9 -0.16
BXA13/PgnJ f 0.388 0.189   8 0.0666 0.486 0.2, 0.7 -0.86
BXA13/PgnJ m 0.35 0.0756   8 0.0267 0.216 0.3, 0.5 -0.79
BXA14/PgnJ f 0.362 0.267   8 0.0944 0.736 0.2, 1.0 -0.96
BXA14/PgnJ m 0.65 0.316   8 0.112 0.487 0.2, 1.3 0.57
BXA16/PgnJ f 0.375 0.104   8 0.0366 0.276 0.3, 0.6 -0.91
BXA16/PgnJ m 0.275 0.183   8 0.0648 0.666 0.1, 0.7 -1.13
BXA1/PgnJ f 0.787 0.429   8 0.152 0.545 0.4, 1.8 0.74
BXA1/PgnJ m 0.35 0.0837   6 0.0342 0.239 0.3, 0.5 -0.79
BXA24/PgnJ f 0.45 0.278   8 0.0982 0.617 0.2, 1.1 -0.61
BXA24/PgnJ m 0.45 0.288   8 0.102 0.64 0.2, 1.0 -0.34
BXA25/PgnJ f 0.487 0.203   8 0.0718 0.417 0.3, 0.8 -0.46
BXA25/PgnJ m 0.325 0.0886   8 0.0313 0.273 0.2, 0.5 -0.9
BXA26/PgnJ f 0.6 0.495   9 0.165 0.825 0.2, 1.8 -0.01
BXA26/PgnJ m 0.757 0.378   7 0.143 0.499 0.3, 1.4 1.06
BXA2/PgnJ f 0.462 0.119   8 0.042 0.257 0.3, 0.7 -0.56
BXA2/PgnJ m 0.47 0.177   10 0.0559 0.376 0.2, 0.8 -0.25
BXA4/PgnJ f 0.288 0.125   8 0.0441 0.434 0.1, 0.5 -1.26
BXA4/PgnJ m 0.312 0.113   8 0.0398 0.36 0.2, 0.5 -0.96
BXA7/PgnJ f 0.362 0.106   8 0.0375 0.293 0.3, 0.6 -0.96
BXA7/PgnJ m 0.5 0.256   8 0.0906 0.513 0.3, 1.1 -0.11
BXA8/PgnJ f 0.556 0.228   16 0.057 0.41 0.3, 1.0 -0.19
BXA8/PgnJ m 0.46 0.348   15 0.0899 0.757 0.2, 1.6 -0.29


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
AXB10/PgnJ f 0.8143 0.113 1.0365 0.5921
AXB10/PgnJ m 0.3875 0.1057 0.5953 0.1797
AXB12/PgnJ f 1.11 0.0945 1.2959 0.9241
AXB12/PgnJ m 0.675 0.1057 0.8828 0.4672
AXB13/PgnJ f 0.4125 0.1057 0.6203 0.2047
AXB13/PgnJ m 0.2375 0.1057 0.4453 0.0297
AXB15/PgnJ f 0.5125 0.1057 0.7203 0.3047
AXB15/PgnJ m 0.4625 0.1057 0.6703 0.2547
AXB19a/PgnJ f 0.7125 0.1057 0.9203 0.5047
AXB19a/PgnJ m 0.5875 0.1057 0.7953 0.3797
AXB19b/PgnJ f 1.1286 0.113 1.3507 0.9064
AXB19b/PgnJ m 0.875 0.1057 1.0828 0.6672
AXB19/PgnJ f 0.8125 0.1057 1.0203 0.6047
AXB19/PgnJ m 0.5125 0.1057 0.7203 0.3047
AXB1/PgnJ f 0.4 0.1337 0.6629 0.1371
AXB1/PgnJ m 0.5 0.1057 0.7078 0.2922
AXB23/PgnJ f 0.64 0.1337 0.9029 0.3771
AXB23/PgnJ m 0.5286 0.113 0.7507 0.3064
AXB24/PgnJ f 0.5625 0.1057 0.7703 0.3547
AXB24/PgnJ m 0.425 0.1057 0.6328 0.2172
AXB2/PgnJ f 0.55 0.1057 0.7578 0.3422
AXB2/PgnJ m 0.375 0.1057 0.5828 0.1672
AXB4/PgnJ f 0.55 0.1221 0.79 0.31
AXB4/PgnJ m 0.3667 0.0997 0.5626 0.1707
AXB5/PgnJ f 1.2 0.113 1.4222 0.9778
AXB5/PgnJ m 1.1571 0.113 1.3793 0.935
AXB6/PgnJ f 0.8 0.113 1.0222 0.5778
AXB6/PgnJ m 0.85 0.1221 1.09 0.61
AXB8/PgnJ f 0.8143 0.113 1.0365 0.5921
AXB8/PgnJ m 0.95 0.1057 1.1578 0.7422
BXA11/PgnJ f 0.3 0.1057 0.5078 0.0922
BXA11/PgnJ m 0.4 0.1057 0.6078 0.1922
BXA12/PgnJ f 0.4375 0.1057 0.6453 0.2297
BXA12/PgnJ m 0.4875 0.1057 0.6953 0.2797
BXA13/PgnJ f 0.3875 0.1057 0.5953 0.1797
BXA13/PgnJ m 0.35 0.1057 0.5578 0.1422
BXA14/PgnJ f 0.3625 0.1057 0.5703 0.1547
BXA14/PgnJ m 0.65 0.1057 0.8578 0.4422
BXA16/PgnJ f 0.375 0.1057 0.5828 0.1672
BXA16/PgnJ m 0.275 0.1057 0.4828 0.0672
BXA1/PgnJ f 0.7875 0.1057 0.9953 0.5797
BXA1/PgnJ m 0.35 0.1221 0.59 0.11
BXA24/PgnJ f 0.45 0.1057 0.6578 0.2422
BXA24/PgnJ m 0.45 0.1057 0.6578 0.2422
BXA25/PgnJ f 0.4875 0.1057 0.6953 0.2797
BXA25/PgnJ m 0.325 0.1057 0.5328 0.1172
BXA26/PgnJ f 0.6 0.0997 0.7959 0.4041
BXA26/PgnJ m 0.7571 0.113 0.9793 0.535
BXA2/PgnJ f 0.4625 0.1057 0.6703 0.2547
BXA2/PgnJ m 0.47 0.0945 0.6559 0.2841
BXA4/PgnJ f 0.2875 0.1057 0.4953 0.0797
BXA4/PgnJ m 0.3125 0.1057 0.5203 0.1047
BXA7/PgnJ f 0.3625 0.1057 0.5703 0.1547
BXA7/PgnJ m 0.5 0.1057 0.7078 0.2922
BXA8/PgnJ f 0.5562 0.0747 0.7032 0.4093
BXA8/PgnJ m 0.46 0.0772 0.6118 0.3082


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
AXB10/PgnJ both 0.6009 0.0774 0.753 0.4488
AXB12/PgnJ both 0.8925 0.0709 1.0319 0.7531
AXB13/PgnJ both 0.325 0.0747 0.472 0.178
AXB15/PgnJ both 0.4875 0.0747 0.6345 0.3405
AXB19a/PgnJ both 0.65 0.0747 0.797 0.503
AXB19b/PgnJ both 1.0018 0.0774 1.1539 0.8497
AXB19/PgnJ both 0.6625 0.0747 0.8095 0.5155
AXB1/PgnJ both 0.45 0.0852 0.6176 0.2824
AXB23/PgnJ both 0.5843 0.0875 0.7564 0.4122
AXB24/PgnJ both 0.4937 0.0747 0.6407 0.3468
AXB2/PgnJ both 0.4625 0.0747 0.6095 0.3155
AXB4/PgnJ both 0.4583 0.0788 0.6132 0.3034
AXB5/PgnJ both 1.1786 0.0799 1.3357 1.0215
AXB6/PgnJ both 0.825 0.0832 0.9885 0.6615
AXB8/PgnJ both 0.8821 0.0774 1.0343 0.73
BXA11/PgnJ both 0.35 0.0747 0.497 0.203
BXA12/PgnJ both 0.4625 0.0747 0.6095 0.3155
BXA13/PgnJ both 0.3687 0.0747 0.5157 0.2218
BXA14/PgnJ both 0.5062 0.0747 0.6532 0.3593
BXA16/PgnJ both 0.325 0.0747 0.472 0.178
BXA1/PgnJ both 0.5687 0.0807 0.7275 0.41
BXA24/PgnJ both 0.45 0.0747 0.597 0.303
BXA25/PgnJ both 0.4062 0.0747 0.5532 0.2593
BXA26/PgnJ both 0.6786 0.0753 0.8267 0.5305
BXA2/PgnJ both 0.4662 0.0709 0.6057 0.3268
BXA4/PgnJ both 0.3 0.0747 0.447 0.153
BXA7/PgnJ both 0.4312 0.0747 0.5782 0.2843
BXA8/PgnJ both 0.5081 0.0537 0.6138 0.4025




  GWAS USING LINEAR MIXED MODELS

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